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@ -14827,3 +14827,43 @@ trees by inserting random mutations. The tbsp package implements an
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alternative method to detect significant, cell type specific sequence
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alternative method to detect significant, cell type specific sequence
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mutations from scRNA-Seq data.")
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mutations from scRNA-Seq data.")
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(license license:expat))))
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(license license:expat))))
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(define-public tabixpp
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(package
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(name "tabixpp")
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(version "1.0.0")
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/ekg/tabixpp")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "08vx6nsipk971cyr8z53rnzwkvlld63kcn1fw0pwddynz91xfny8"))))
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(build-system gnu-build-system)
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(inputs
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`(("htslib" ,htslib)
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("zlib" ,zlib)))
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(arguments
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`(#:tests? #f ; There are no tests to run.
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#:phases
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(modify-phases %standard-phases
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(delete 'configure) ; There is no configure phase.
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;; The build phase needs overriding the location of htslib.
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(replace 'build
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(lambda* (#:key inputs #:allow-other-keys)
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(let ((htslib-ref (assoc-ref inputs "htslib")))
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(invoke "make"
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(string-append "HTS_LIB=" htslib-ref "/lib/libhts.a")
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"HTS_HEADERS=" ; No need to check for headers here.
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(string-append "LIBPATH=-L. -L" htslib-ref "/include")))))
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(replace 'install
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((bin (string-append (assoc-ref outputs "out") "/bin")))
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(install-file "tabix++" bin))
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#t)))))
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(home-page "https://github.com/ekg/tabixpp")
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(synopsis "C++ wrapper around tabix project")
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(description "This is a C++ wrapper around the Tabix project which abstracts
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some of the details of opening and jumping in tabix-indexed files.")
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(license license:expat)))
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