gnu: Add python-pybigwig.
* gnu/packages/bioinformatics.scm (python-pybigwig, python2-pybigwig): New variables.
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@ -1194,6 +1194,47 @@ other types of unwanted sequence from high-throughput sequencing reads.")
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files.")
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files.")
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(license license:expat)))
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(license license:expat)))
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(define-public python-pybigwig
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(package
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(name "python-pybigwig")
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(version "0.2.5")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "pyBigWig" version))
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(sha256
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(base32
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"0yrpdxg3y0sny25x4w22lv1k47jzccqjmg7j4bp0hywklvp0hg7d"))
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(modules '((guix build utils)))
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(snippet
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'(begin
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;; Delete bundled libBigWig sources
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(delete-file-recursively "libBigWig")))))
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(build-system python-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'link-with-libBigWig
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(lambda* (#:key inputs #:allow-other-keys)
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(substitute* "setup.py"
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(("libs=\\[") "libs=[\"BigWig\", "))
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#t)))))
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(inputs
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`(("libbigwig" ,libbigwig)
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("zlib" ,zlib)
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("curl" ,curl)))
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(home-page "https://github.com/dpryan79/pyBigWig")
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(synopsis "Access bigWig files in Python using libBigWig")
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(description
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"This package provides Python bindings to the libBigWig library for
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accessing bigWig files.")
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(license license:expat)))
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(define-public python2-pybigwig
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(let ((pybigwig (package-with-python2 python-pybigwig)))
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(package (inherit pybigwig)
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(native-inputs
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`(("python-setuptools" ,python2-setuptools))))))
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(define-public deeptools
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(define-public deeptools
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(package
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(package
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(name "deeptools")
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(name "deeptools")
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