gnu: Add r-rhdf5.

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Raoul Jean Pierre Bonnal 2016-12-27 22:14:28 +01:00 committed by Ricardo Wurmus
parent d4af25b51b
commit 69f2b3bdf9
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@ -7822,6 +7822,49 @@ provided as a matrix which can be used as an offset for different expression
of gene-level counts.")
(license license:gpl2+)))
(define-public r-rhdf5
(package
(name "r-rhdf5")
(version "2.18.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "rhdf5" version))
(sha256
(base32
"0pb04li55ysag30s7rap7nnivc0rqmgsmpj43kin0rxdabfn1w0k"))))
(build-system r-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'unpack-smallhdf5
(lambda* (#:key outputs #:allow-other-keys)
(system* "tar" "-xzvf"
"src/hdf5source/hdf5small.tgz" "-C" "src/" )
(substitute* "src/Makevars"
(("^.*cd hdf5source &&.*$") "")
(("^.*gunzip -dc hdf5small.tgz.*$") "")
(("^.*rm -rf hdf5.*$") "")
(("^.*mv hdf5source/hdf5 ..*$") ""))
(substitute* "src/hdf5/configure"
(("/bin/mv") "mv"))
#t)))))
(propagated-inputs
`(("r-zlibbioc" ,r-zlibbioc)))
(inputs
`(("perl" ,perl)
("zlib" ,zlib)))
(home-page "http://bioconductor.org/packages/rhdf5")
(synopsis "HDF5 interface to R")
(description
"This R/Bioconductor package provides an interface between HDF5 and R.
HDF5's main features are the ability to store and access very large and/or
complex datasets and a wide variety of metadata on mass storage (disk) through
a completely portable file format. The rhdf5 package is thus suited for the
exchange of large and/or complex datasets between R and other software
package, and for letting R applications work on datasets that are larger than
the available RAM.")
(license license:artistic2.0)))
(define-public emboss
(package
(name "emboss")