gnu: Add r-pcamethods.
* gnu/packages/bioinformatics.scm (r-pcamethods): New variable.
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@ -8393,3 +8393,32 @@ XML package. The parser tries to be general and able to handle all types of
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mzIdentML files with the drawback of having less pretty output than a vendor
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mzIdentML files with the drawback of having less pretty output than a vendor
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specific parser.")
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specific parser.")
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(license license:gpl2+)))
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(license license:gpl2+)))
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(define-public r-pcamethods
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(package
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(name "r-pcamethods")
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(version "1.66.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "pcaMethods" version))
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(sha256
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(base32
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"18mawhxw57pgpn87qha4mwki24gqja7wpqha8q496476vyap11xw"))))
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(properties `((upstream-name . "pcaMethods")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-rcpp" ,r-rcpp)))
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(home-page "https://github.com/hredestig/pcamethods")
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(synopsis "Collection of PCA methods")
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(description
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"This package provides Bayesian PCA, Probabilistic PCA, Nipals PCA,
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Inverse Non-Linear PCA and the conventional SVD PCA. A cluster based method
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for missing value estimation is included for comparison. BPCA, PPCA and
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NipalsPCA may be used to perform PCA on incomplete data as well as for
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accurate missing value estimation. A set of methods for printing and plotting
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the results is also provided. All PCA methods make use of the same data
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structure (pcaRes) to provide a common interface to the PCA results.")
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(license license:gpl3+)))
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