From 6dc60998534bab0ed267b08025d06883d40670ac Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 30 Mar 2016 12:24:44 +0200 Subject: [PATCH] gnu: Add r-bsgenome-dmelanogaster-ucsc-dm3. * gnu/packages/bioinformatics.scm (r-bsgenome-dmelanogaster-ucsc-dm3): New variable. --- gnu/packages/bioinformatics.scm | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 23dc9d2e2e..da4a2d5eba 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4863,6 +4863,38 @@ elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings objects.") (license license:artistic2.0))) +(define-public r-bsgenome-dmelanogaster-ucsc-dm3 + (package + (name "r-bsgenome-dmelanogaster-ucsc-dm3") + (version "1.4.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "http://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "BSgenome.Dmelanogaster.UCSC.dm3_" + version ".tar.gz")) + (sha256 + (base32 + "19bm3lkhhkag3gnwp419211fh0cnr0x6fa0r1lr0ycwrikxdxsv8")))) + (properties + `((upstream-name . "BSgenome.Dmelanogaster.UCSC.dm3"))) + (build-system r-build-system) + ;; As this package provides little more than a very large data file it + ;; doesn't make sense to build substitutes. + (arguments `(#:substitutable? #f)) + (propagated-inputs + `(("r-bsgenome" ,r-bsgenome))) + (home-page + "http://www.bioconductor.org/packages/BSgenome.Dmelanogaster.UCSC.dm3/") + (synopsis "Full genome sequences for Fly") + (description + "This package provides full genome sequences for Drosophila +melanogaster (Fly) as provided by UCSC (dm3, April 2006) and stored in +Biostrings objects.") + (license license:artistic2.0))) + (define-public r-motifrg (package (name "r-motifrg")