gnu: openmpi: Update to 3.0.1.
* gnu/packages/mpi.scm (openmpi): Update to 3.0.1. [arguments]: In 'remove-absolute' phase, adjust romio file name. * gnu/packages/maths.scm (scalapack)[arguments]: Add 'set-test-environment' phase. (slepc-openmpi)[arguments]: Likewise. (mumps-openmpi)[arguments]: Likewise. (superlu-dist)[arguments]: In 'check' phase, set 'OMPI_MCA_plm_rsh_agent'. (scotch)[arguments]: In 'build-esmumps', likewise. (p4est)[arguments]: Add 'set-test-environment' phase. (hypre-openmpi)[arguments]: Likewise.
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Ludovic Courtès
Ludovic Courtès
parent
0921eff2a8
commit
6df2a50ac4
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@ -554,7 +554,16 @@ problems in numerical linear algebra.")
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("fortran" ,gfortran)
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("lapack" ,lapack))) ;for testing only
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(arguments
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`(#:configure-flags `("-DBUILD_SHARED_LIBS:BOOL=YES")))
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`(#:configure-flags `("-DBUILD_SHARED_LIBS:BOOL=YES")
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#:phases (modify-phases %standard-phases
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(add-before 'check 'set-test-environment
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(lambda _
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;; By default, running the test suite would fail because
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;; 'ssh' could not be found in $PATH. Define this
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;; variable to placate Open MPI without adding a
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;; dependency on OpenSSH (the agent isn't used anyway.)
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(setenv "OMPI_MCA_plm_rsh_agent" (which "cat"))
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#t)))))
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(home-page "http://www.netlib.org/scalapack/")
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(synopsis "Library for scalable numerical linear algebra")
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(description
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@ -1786,6 +1795,18 @@ arising after the discretization of partial differential equations.")
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(define-public slepc-openmpi
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(package (inherit slepc)
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(name "slepc-openmpi")
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(arguments
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(substitute-keyword-arguments (package-arguments slepc)
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((#:phases phases '%standard-phases)
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`(modify-phases ,phases
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(add-before 'check 'set-test-environment
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(lambda _
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;; By default, running the test suite would fail because 'ssh'
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;; could not be found in $PATH. Define this variable to
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;; placate Open MPI without adding a dependency on OpenSSH (the
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;; agent isn't used anyway.)
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(setenv "OMPI_MCA_plm_rsh_agent" (which "cat"))
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#t))))))
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(inputs
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`(("mpi" ,openmpi)
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("arpack" ,arpack-ng-openmpi)
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@ -1955,11 +1976,18 @@ sparse system of linear equations A x = b using Guassian elimination.")
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(substitute-keyword-arguments (package-arguments mumps)
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((#:phases phases)
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`(modify-phases ,phases
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(replace
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'check
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(lambda _
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((assoc-ref ,phases 'check)
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#:exec-prefix '("mpirun" "-n" "2"))))))))
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(add-before 'check 'set-test-environment
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(lambda _
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;; By default, running the test suite would fail because 'ssh'
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;; could not be found in $PATH. Define this variable to
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;; placate Open MPI without adding a dependency on OpenSSH (the
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;; agent isn't used anyway.)
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(setenv "OMPI_MCA_plm_rsh_agent" (which "cat"))
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#t))
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(replace 'check
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(lambda _
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((assoc-ref ,phases 'check)
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#:exec-prefix '("mpirun" "-n" "2"))))))))
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(synopsis "Multifrontal sparse direct solver (with MPI)")))
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(define-public mumps-metis-openmpi
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@ -2201,6 +2229,11 @@ CDEFS = -DAdd_"
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#t))
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(replace 'check
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(lambda _
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;; By default, running the test suite would fail because 'ssh'
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;; could not be found in $PATH. Define this variable to placate
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;; Open MPI without adding a dependency on OpenSSH (the agent
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;; isn't used anyway.)
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(setenv "OMPI_MCA_plm_rsh_agent" (which "cat"))
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(with-directory-excursion "EXAMPLE"
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(and
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(zero? (system* "mpirun" "-n" "2"
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@ -2295,6 +2328,12 @@ YACC = bison -pscotchyy -y -b y
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(add-after
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'build 'build-esmumps
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(lambda _
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;; By default, running the test suite would fail because 'ssh'
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;; could not be found in $PATH. Define this variable to placate
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;; Open MPI without adding a dependency on OpenSSH (the agent
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;; isn't used anyway.)
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(setenv "OMPI_MCA_plm_rsh_agent" (which "cat"))
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(zero? (system* "make"
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(format #f "-j~a" (parallel-job-count))
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"esmumps"))))
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@ -2474,7 +2513,16 @@ schemes.")
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" -lopenblas")
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,(string-append "LAPACK_LIBS=-L"
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(assoc-ref %build-inputs "lapack")
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" -llapack"))))
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" -llapack"))
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#:phases (modify-phases %standard-phases
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(add-before 'check 'set-test-environment
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(lambda _
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;; By default, running the test suite would fail because
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;; 'ssh' could not be found in $PATH. Define this
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;; variable to placate Open MPI without adding a
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;; dependency on OpenSSH (the agent isn't used anyway.)
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(setenv "OMPI_MCA_plm_rsh_agent" (which "cat"))
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#t)))))
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(home-page "http://www.p4est.org")
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(synopsis "Adaptive mesh refinement on forests of octrees")
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(description
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@ -3531,7 +3579,17 @@ problems.")
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(substitute-keyword-arguments (package-arguments hypre)
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((#:configure-flags flags)
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``("--with-MPI"
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,@(delete "--without-MPI" ,flags)))))
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,@(delete "--without-MPI" ,flags)))
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((#:phases phases)
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`(modify-phases ,phases
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(add-before 'check 'set-test-environment
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(lambda _
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;; By default, running the test suite would fail because 'ssh'
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;; could not be found in $PATH. Define this variable to
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;; placate Open MPI without adding a dependency on OpenSSH (the
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;; agent isn't used anyway.)
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(setenv "OMPI_MCA_plm_rsh_agent" (which "cat"))
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#t))))))
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(synopsis "Parallel solvers and preconditioners for linear equations")
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(description
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"HYPRE is a software library of high performance preconditioners and
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@ -153,7 +153,7 @@ bind processes, and much more.")
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(define-public openmpi
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(package
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(name "openmpi")
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(version "1.10.7")
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(version "3.0.1")
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(source
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(origin
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(method url-fetch)
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@ -162,7 +162,7 @@ bind processes, and much more.")
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"/downloads/openmpi-" version ".tar.bz2"))
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(sha256
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(base32
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"142s1vny9gllkq336yafxayjgcirj2jv0ddabj879jgya7hyr2d0"))))
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"0pbqrm5faf57nasy1s81wqivl7zvxmv8lzjh8hvb0f3qxv8m0d36"))))
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(build-system gnu-build-system)
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(inputs
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`(("hwloc" ,hwloc "lib")
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@ -205,8 +205,8 @@ bind processes, and much more.")
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(("_ABSOLUTE") ""))
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;; Avoid valgrind (which pulls in gdb etc.).
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(substitute*
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'("./ompi/mca/io/romio/src/io_romio_component.c")
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(("MCA_io_romio_COMPLETE_CONFIGURE_FLAGS")
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'("./ompi/mca/io/romio314/src/io_romio314_component.c")
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(("MCA_io_romio314_COMPLETE_CONFIGURE_FLAGS")
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"\"[elided to reduce closure]\""))
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#t))
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(add-before 'build 'scrub-timestamps ;reproducibility
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