gnu: Add SummarizedExperiment.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): New variable.
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@ -3639,6 +3639,35 @@ binary variant call (BCF) and compressed indexed tab-delimited (tabix)
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files.")
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files.")
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(license license:expat)))
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(license license:expat)))
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(define-public r-summarizedexperiment
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(package
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(name "r-summarizedexperiment")
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(version "1.0.1")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "SummarizedExperiment" version))
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(sha256
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(base32
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"0w1dwp99p6i7sc3cn0ir3dr8ksgxwjf16675h5i8n6gbv4rl9lz6"))))
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(properties
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`((upstream-name . "SummarizedExperiment")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-s4vectors" ,r-s4vectors)))
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(home-page "http://bioconductor.org/packages/SummarizedExperiment")
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(synopsis "Container for representing genomic ranges by sample")
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(description
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"The SummarizedExperiment container contains one or more assays, each
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represented by a matrix-like object of numeric or other mode. The rows
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typically represent genomic ranges of interest and the columns represent
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samples.")
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(license license:artistic2.0)))
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(define-public r-qtl
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(define-public r-qtl
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(package
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(package
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(name "r-qtl")
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(name "r-qtl")
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