gnu: Add r-riboseqr.
* gnu/packages/bioconductor.scm (r-riboseqr): New variable.
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@ -575,3 +575,31 @@ the counting of genomic sequence reads on CDS, 3'UTR, and 5'UTR, and plotting
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of count data: pairs, log fold-change, codon frequency and coverage
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assessment, principal component analysis on codon coverage.")
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(license license:gpl3)))
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(define-public r-riboseqr
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(package
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(name "r-riboseqr")
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(version "1.14.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "riboSeqR" version))
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(sha256
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(base32
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"0xavd1cdhi8qfjn9a1hjhflyg6jq1ydvv56z12gjz572pwz2knvn"))))
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(properties `((upstream-name . "riboSeqR")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-abind" ,r-abind)
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("r-bayseq" ,r-bayseq)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-rsamtools" ,r-rsamtools)
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("r-seqlogo" ,r-seqlogo)))
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(home-page "https://bioconductor.org/packages/riboSeqR/")
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(synopsis "Analysis of sequencing data from ribosome profiling experiments")
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(description
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"This package provides plotting functions, frameshift detection and
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parsing of genetic sequencing data from ribosome profiling experiments.")
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(license license:gpl3)))
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