gnu: Add r-riboseqr.

* gnu/packages/bioconductor.scm (r-riboseqr): New variable.
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Ricardo Wurmus 2018-06-15 07:38:27 +02:00
parent 0490f9de88
commit 6ffdfe6a01
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@ -575,3 +575,31 @@ the counting of genomic sequence reads on CDS, 3'UTR, and 5'UTR, and plotting
of count data: pairs, log fold-change, codon frequency and coverage
assessment, principal component analysis on codon coverage.")
(license license:gpl3)))
(define-public r-riboseqr
(package
(name "r-riboseqr")
(version "1.14.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "riboSeqR" version))
(sha256
(base32
"0xavd1cdhi8qfjn9a1hjhflyg6jq1ydvv56z12gjz572pwz2knvn"))))
(properties `((upstream-name . "riboSeqR")))
(build-system r-build-system)
(propagated-inputs
`(("r-abind" ,r-abind)
("r-bayseq" ,r-bayseq)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-rsamtools" ,r-rsamtools)
("r-seqlogo" ,r-seqlogo)))
(home-page "https://bioconductor.org/packages/riboSeqR/")
(synopsis "Analysis of sequencing data from ribosome profiling experiments")
(description
"This package provides plotting functions, frameshift detection and
parsing of genetic sequencing data from ribosome profiling experiments.")
(license license:gpl3)))