gnu: Add bpp-seq.

* gnu/packages/bioinformatics.scm (bpp-seq): New variable.
This commit is contained in:
Ben Woodcroft 2016-07-12 15:59:52 +10:00
parent 985d841144
commit 70f1bc051a
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1 changed files with 34 additions and 0 deletions

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@ -555,6 +555,40 @@ Bio++ intends to help programmers to write computer expensive programs, by
providing them a set of re-usable tools.") providing them a set of re-usable tools.")
(license license:cecill-c)))) (license license:cecill-c))))
(define-public bpp-seq
;; The last release was in 2014 and the recommended way to install from source
;; is to clone the git repository, so we do this.
;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
(let ((commit "6cfa07965ce152e5598a89df2fa80a75973bfa33"))
(package
(name "bpp-seq")
(version (string-append "2.2.0-1." (string-take commit 7)))
(source (origin
(method git-fetch)
(uri (git-reference
(url "http://biopp.univ-montp2.fr/git/bpp-seq")
(commit commit)))
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
"1nys5jq7jqvdg40d91wsmj3q2yzy4276cp7sp44n67p468f27zf2"))))
(build-system cmake-build-system)
(arguments
`(#:parallel-build? #f
;; If out-of-source, test data is not copied into the build directory
;; so the tests fail.
#:out-of-source? #f))
(inputs
`(("bpp-core" ,bpp-core)
("gcc" ,gcc-5))) ; Use GCC 5 as per 'bpp-core'.
(home-page "http://biopp.univ-montp2.fr")
(synopsis "Bio++ sequence library")
(description
"Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics. This
library provides sequence-related modules.")
(license license:cecill-c))))
(define-public blast+ (define-public blast+
(package (package
(name "blast+") (name "blast+")