gnu: Add bpp-seq.
* gnu/packages/bioinformatics.scm (bpp-seq): New variable.
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@ -555,6 +555,40 @@ Bio++ intends to help programmers to write computer expensive programs, by
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providing them a set of re-usable tools.")
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(license license:cecill-c))))
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(define-public bpp-seq
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;; The last release was in 2014 and the recommended way to install from source
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;; is to clone the git repository, so we do this.
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;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
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(let ((commit "6cfa07965ce152e5598a89df2fa80a75973bfa33"))
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(package
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(name "bpp-seq")
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(version (string-append "2.2.0-1." (string-take commit 7)))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "http://biopp.univ-montp2.fr/git/bpp-seq")
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(commit commit)))
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(file-name (string-append name "-" version "-checkout"))
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(sha256
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(base32
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"1nys5jq7jqvdg40d91wsmj3q2yzy4276cp7sp44n67p468f27zf2"))))
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(build-system cmake-build-system)
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(arguments
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`(#:parallel-build? #f
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;; If out-of-source, test data is not copied into the build directory
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;; so the tests fail.
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#:out-of-source? #f))
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(inputs
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`(("bpp-core" ,bpp-core)
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("gcc" ,gcc-5))) ; Use GCC 5 as per 'bpp-core'.
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(home-page "http://biopp.univ-montp2.fr")
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(synopsis "Bio++ sequence library")
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(description
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"Bio++ is a set of C++ libraries for Bioinformatics, including sequence
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analysis, phylogenetics, molecular evolution and population genetics. This
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library provides sequence-related modules.")
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(license license:cecill-c))))
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(define-public blast+
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(package
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(name "blast+")
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