gnu: Add r-mzr.
* gnu/packages/bioinformatics.scm (r-mzr): New variable.
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@ -8248,3 +8248,35 @@ as allowing spectra with different resolutions.")
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"This package provides S4 generic functions needed by Bioconductor
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"This package provides S4 generic functions needed by Bioconductor
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proteomics packages.")
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proteomics packages.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-mzr
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(package
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(name "r-mzr")
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(version "2.8.1")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "mzR" version))
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(sha256
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(base32
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"0ipmhg6l3pf648rdx5g2ha7l5ppd3cja6afxhdw76x8ga3633x0r"))))
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(properties `((upstream-name . "mzR")))
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(build-system r-build-system)
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(inputs
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`(("netcdf" ,netcdf)))
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-protgenerics" ,r-protgenerics)
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("r-rcpp" ,r-rcpp)
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("r-zlibbioc" ,r-zlibbioc)))
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(home-page "https://github.com/sneumann/mzR/")
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(synopsis "Parser for mass spectrometry data files")
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(description
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"The mzR package provides a unified API to the common file formats and
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parsers available for mass spectrometry data. It comes with a wrapper for the
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ISB random access parser for mass spectrometry mzXML, mzData and mzML files.
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The package contains the original code written by the ISB, and a subset of the
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proteowizard library for mzML and mzIdentML. The netCDF reading code has
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previously been used in XCMS.")
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(license license:artistic2.0)))
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