gnu: Add r-mzr.

* gnu/packages/bioinformatics.scm (r-mzr): New variable.
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Ricardo Wurmus 2017-01-16 12:18:12 +01:00
parent ae26217430
commit 71676a1f4c
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1 changed files with 32 additions and 0 deletions

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@ -8248,3 +8248,35 @@ as allowing spectra with different resolutions.")
"This package provides S4 generic functions needed by Bioconductor "This package provides S4 generic functions needed by Bioconductor
proteomics packages.") proteomics packages.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-mzr
(package
(name "r-mzr")
(version "2.8.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "mzR" version))
(sha256
(base32
"0ipmhg6l3pf648rdx5g2ha7l5ppd3cja6afxhdw76x8ga3633x0r"))))
(properties `((upstream-name . "mzR")))
(build-system r-build-system)
(inputs
`(("netcdf" ,netcdf)))
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-protgenerics" ,r-protgenerics)
("r-rcpp" ,r-rcpp)
("r-zlibbioc" ,r-zlibbioc)))
(home-page "https://github.com/sneumann/mzR/")
(synopsis "Parser for mass spectrometry data files")
(description
"The mzR package provides a unified API to the common file formats and
parsers available for mass spectrometry data. It comes with a wrapper for the
ISB random access parser for mass spectrometry mzXML, mzData and mzML files.
The package contains the original code written by the ISB, and a subset of the
proteowizard library for mzML and mzIdentML. The netCDF reading code has
previously been used in XCMS.")
(license license:artistic2.0)))