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gnu: hwloc: Add 2.0.0. 

* gnu/packages/mpi.scm (hwloc-2.0): New variable.
* gnu/packages/patches/hwloc-tests-without-sysfs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
This commit is contained in:
Ludovic Courtès 2018-02-06 17:33:14 +01:00 committed by Ludovic Courtès
parent fbcad8843a
commit 71e789319c
No known key found for this signature in database
GPG Key ID: 090B11993D9AEBB5
3 changed files with 65 additions and 1 deletions
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1
gnu/local.mk
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@ -757,6 +757,7 @@ dist_patch_DATA = \
%D%/packages/patches/higan-remove-march-native-flag.patch \
%D%/packages/patches/hubbub-sort-entities.patch \
%D%/packages/patches/hurd-fix-eth-multiplexer-dependency.patch \
%D%/packages/patches/hwloc-tests-without-sysfs.patch \
%D%/packages/patches/hydra-disable-darcs-test.patch \
%D%/packages/patches/icecat-avoid-bundled-libraries.patch \
%D%/packages/patches/icecat-bug-1348660-pt5.patch \

23
gnu/packages/mpi.scm
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@ -1,6 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014, 2015 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2014, 2015, 2016, 2017 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2014, 2015, 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2014 Ian Denhardt <ian@zenhack.net>
;;; Copyright © 2016 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2017 Dave Love <fx@gnu.org>
@ -39,9 +39,12 @@
#:use-module (gnu packages ncurses)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages valgrind)
#:use-module (srfi srfi-1)
#:use-module (ice-9 match))
(define-public hwloc
;; Note: For now we keep 1.x as the default because many packages have yet
;; to migrate to 2.0.
(package
(name "hwloc")
(version "1.11.8")
@ -110,6 +113,24 @@ a powerful programming interface to gather information about the hardware,
bind processes, and much more.")
(license bsd-3)))
(define-public hwloc-2.0
;; Note: 2.0 isn't the default yet, see above.
(package
(inherit hwloc)
(version "2.0.0")
(source (origin
(method url-fetch)
(uri (string-append "https://www.open-mpi.org/software/hwloc/v"
(version-major+minor version)
"/downloads/hwloc-" version ".tar.bz2"))
(sha256
(base32
"021765f9y6pxcxrvfpzzwaig16ypfbph5xjpkd29qkhzs9r6zrcr"))
(patches (search-patches "hwloc-tests-without-sysfs.patch"))))
;; libnuma is no longer needed.
(inputs (alist-delete "numactl" (package-inputs hwloc)))))
(define-public openmpi
(package
(name "openmpi")

42
gnu/packages/patches/hwloc-tests-without-sysfs.patch Normal file
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@ -0,0 +1,42 @@
Fix a test failure in the build environment, where /sys is missing.
From <https://github.com/bgoglin/hwloc/commit/a2cc4f2e2bf4a8bbdd61b578a62e27e7482799cf.patch>.
From a2cc4f2e2bf4a8bbdd61b578a62e27e7482799cf Mon Sep 17 00:00:00 2001
From: Brice Goglin <Brice.Goglin@inria.fr>
Date: Tue, 6 Feb 2018 17:13:26 +0100
Subject: [PATCH] linux: honor the filtering cores and packages when reading
topology from cpuinfo
Caused a make check crash in lstopo --filter all:none in chroot without sysfs.
Thanks to Ludovic Courtes for the report.
Signed-off-by: Brice Goglin <Brice.Goglin@inria.fr>
---
hwloc/topology-linux.c | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
diff --git a/hwloc/topology-linux.c b/hwloc/topology-linux.c
index 290da0d72..e1bbf94e1 100644
--- a/hwloc/topology-linux.c
+++ b/hwloc/topology-linux.c
@@ -4101,7 +4101,8 @@ look_cpuinfo(struct hwloc_topology *topology,
}
/* create package objects */
hwloc_debug("%u pkgs%s\n", numpkgs, missingpkg ? ", but some missing package" : "");
- if (!missingpkg && numpkgs>0) {
+ if (!missingpkg && numpkgs>0
+ && hwloc_filter_check_keep_object_type(topology, HWLOC_OBJ_PACKAGE)) {
for (i = 0; i < numpkgs; i++) {
struct hwloc_obj *obj = hwloc_alloc_setup_object(topology, HWLOC_OBJ_PACKAGE, Lpkg_to_Ppkg[i]);
int doneinfos = 0;
@@ -4145,7 +4146,8 @@ look_cpuinfo(struct hwloc_topology *topology,
}
/* create Core objects */
hwloc_debug("%u cores%s\n", numcores, missingcore ? ", but some missing core" : "");
- if (!missingcore && numcores>0) {
+ if (!missingcore && numcores>0
+ && hwloc_filter_check_keep_object_type(topology, HWLOC_OBJ_CORE)) {
for (i = 0; i < numcores; i++) {
struct hwloc_obj *obj = hwloc_alloc_setup_object(topology, HWLOC_OBJ_CORE, Lcore_to_Pcore[i]);
obj->cpuset = hwloc_bitmap_alloc();