gnu: Add IRanges.

* gnu/packages/bioinformatics.scm (r-iranges): New variable.
master
Ricardo Wurmus 2015-12-18 12:07:39 +01:00
parent 7485129e4f
commit 78addcb0eb
1 changed files with 30 additions and 0 deletions

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@ -3215,6 +3215,36 @@ In addition, a few low-level concrete subclasses of general interest (e.g.
S4Vectors package itself.")
(license license:artistic2.0)))
(define-public r-iranges
(package
(name "r-iranges")
(version "2.4.6")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "IRanges" version))
(sha256
(base32
"00x0266sys1fc5ipa639y84p6m6mgspk2xb099vcwmd3w4hypj9d"))))
(properties
`((upstream-name . "IRanges")
(r-repository . bioconductor)))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-s4vectors" ,r-s4vectors)))
(home-page "http://bioconductor.org/packages/IRanges")
(synopsis "Infrastructure for manipulating intervals on sequences")
(description
"This package provides efficient low-level and highly reusable S4 classes
for storing ranges of integers, RLE vectors (Run-Length Encoding), and, more
generally, data that can be organized sequentially (formally defined as
@code{Vector} objects), as well as views on these @code{Vector} objects.
Efficient list-like classes are also provided for storing big collections of
instances of the basic classes. All classes in the package use consistent
naming and share the same rich and consistent \"Vector API\" as much as
possible.")
(license license:artistic2.0)))
(define-public r-qtl
(package
(name "r-qtl")