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gnu: Add r-txdb-hsapiens-ucsc-hg38-knowngene. 

* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene): New variable.
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Ricardo Wurmus 2019-06-12 16:22:30 +02:00 committed by Ricardo Wurmus
parent 136eeb0b49
commit 798b80cea2
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gnu/packages/bioconductor.scm
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@ -590,6 +590,35 @@ data. It is derived from the UCSC hg19 genome and based on the \"knownGene\"
track. The database is exposed as a @code{TxDb} object.")
(license license:artistic2.0)))
(define-public r-txdb-hsapiens-ucsc-hg38-knowngene
(package
(name "r-txdb-hsapiens-ucsc-hg38-knowngene")
(version "3.4.6")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://bioconductor.org/packages/"
"release/data/annotation/src/contrib"
"/TxDb.Hsapiens.UCSC.hg38.knownGene_"
version ".tar.gz"))
(sha256
(base32
"12j7rri9r129v9w1yiqadg952dx462dh092sxif3r5kk8l7bxkn9"))))
(properties
`((upstream-name . "TxDb.Hsapiens.UCSC.hg38.knownGene")))
(build-system r-build-system)
(propagated-inputs
`(("r-genomicfeatures" ,r-genomicfeatures)))
(home-page
"https://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg38.knownGene/")
(synopsis "Annotation package for human genome in TxDb format")
(description
"This package provides an annotation database of Homo sapiens genome
data. It is derived from the UCSC hg38 genome and based on the \"knownGene\"
track. The database is exposed as a @code{TxDb} object.")
(license license:artistic2.0)))
(define-public r-txdb-mmusculus-ucsc-mm9-knowngene
(package
(name "r-txdb-mmusculus-ucsc-mm9-knowngene")