gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Move from here... * gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): ...to here.
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@ -507,6 +507,41 @@ is derived from the UCSC mm9 genome and based on the \"knownGene\" track. The
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database is exposed as a @code{TxDb} object.")
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database is exposed as a @code{TxDb} object.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-txdb-mmusculus-ucsc-mm10-knowngene
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(package
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(name "r-txdb-mmusculus-ucsc-mm10-knowngene")
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(version "3.4.4")
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(source (origin
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(method url-fetch)
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;; We cannot use bioconductor-uri here because this tarball is
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;; located under "data/annotation/" instead of "bioc/".
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(uri (string-append "https://www.bioconductor.org/packages/"
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"release/data/annotation/src/contrib/"
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"TxDb.Mmusculus.UCSC.mm10.knownGene_"
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version ".tar.gz"))
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(sha256
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(base32
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"01lgxc1fx5nhlpbwjd5zqghkkbmh6axd98ikx4b0spv0jdg6gf39"))))
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(properties
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`((upstream-name . "TxDb.Mmusculus.UCSC.mm10.knownGene")))
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(build-system r-build-system)
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;; As this package provides little more than a very large data file it
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;; doesn't make sense to build substitutes.
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(arguments `(#:substitutable? #f))
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(propagated-inputs
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`(("r-bsgenome" ,r-bsgenome)
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("r-genomicfeatures" ,r-genomicfeatures)
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("r-annotationdbi" ,r-annotationdbi)))
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(home-page
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"https://bioconductor.org/packages/TxDb.Mmusculus.UCSC.mm10.knownGene/")
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(synopsis "Annotation package for TxDb knownGene object(s) for Mouse")
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(description
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"This package loads a TxDb object, which is an R interface to
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prefabricated databases contained in this package. This package provides
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the TxDb object of Mouse data as provided by UCSC (mm10, December 2011)
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based on the knownGene track.")
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(license license:artistic2.0)))
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(define-public r-biocgenerics
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(define-public r-biocgenerics
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(package
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(package
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@ -8105,41 +8105,6 @@ plots the corresponding sequence logo as introduced by Schneider and
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Stephens (1990).")
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Stephens (1990).")
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(license license:lgpl2.0+)))
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(license license:lgpl2.0+)))
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(define-public r-txdb-mmusculus-ucsc-mm10-knowngene
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(package
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(name "r-txdb-mmusculus-ucsc-mm10-knowngene")
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(version "3.4.4")
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(source (origin
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(method url-fetch)
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;; We cannot use bioconductor-uri here because this tarball is
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;; located under "data/annotation/" instead of "bioc/".
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(uri (string-append "https://www.bioconductor.org/packages/"
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"release/data/annotation/src/contrib/"
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"TxDb.Mmusculus.UCSC.mm10.knownGene_"
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version ".tar.gz"))
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(sha256
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(base32
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"01lgxc1fx5nhlpbwjd5zqghkkbmh6axd98ikx4b0spv0jdg6gf39"))))
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(properties
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`((upstream-name . "TxDb.Mmusculus.UCSC.mm10.knownGene")))
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(build-system r-build-system)
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;; As this package provides little more than a very large data file it
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;; doesn't make sense to build substitutes.
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(arguments `(#:substitutable? #f))
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(propagated-inputs
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`(("r-bsgenome" ,r-bsgenome)
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("r-genomicfeatures" ,r-genomicfeatures)
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("r-annotationdbi" ,r-annotationdbi)))
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(home-page
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"https://bioconductor.org/packages/TxDb.Mmusculus.UCSC.mm10.knownGene/")
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(synopsis "Annotation package for TxDb knownGene object(s) for Mouse")
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(description
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"This package loads a TxDb object, which is an R interface to
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prefabricated databases contained in this package. This package provides
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the TxDb object of Mouse data as provided by UCSC (mm10, December 2011)
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based on the knownGene track.")
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(license license:artistic2.0)))
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(define-public r-motifrg
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(define-public r-motifrg
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(package
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(package
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(name "r-motifrg")
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(name "r-motifrg")
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