Merge branch 'staging'

gnu/local.mk

@@ -664,6 +664,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/apr-skip-getservbyname-test.patch	\
   %D%/packages/patches/aria2-CVE-2019-3500.patch		\
   %D%/packages/patches/aspell-default-dict-dir.patch		\
+  %D%/packages/patches/at-spi2-core-meson-compat.patch		\
   %D%/packages/patches/ath9k-htc-firmware-binutils.patch	\
   %D%/packages/patches/ath9k-htc-firmware-gcc.patch		\
   %D%/packages/patches/ath9k-htc-firmware-objcopy.patch		\
@@ -813,8 +814,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/gcc-6-source-date-epoch-1.patch		\
   %D%/packages/patches/gcc-6-source-date-epoch-2.patch		\
   %D%/packages/patches/gcc-8-strmov-store-file-names.patch	\
-  %D%/packages/patches/gcr-disable-failing-tests.patch		\
-  %D%/packages/patches/gcr-fix-collection-tests-to-work-with-gpg-21.patch	\
   %D%/packages/patches/gd-CVE-2018-5711.patch			\
   %D%/packages/patches/gd-CVE-2018-1000222.patch		\
   %D%/packages/patches/gd-CVE-2019-6977.patch			\
@@ -859,7 +858,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/gmp-arm-asm-nothumb.patch		\
   %D%/packages/patches/gmp-faulty-test.patch			\
   %D%/packages/patches/gnome-shell-theme.patch			\
-  %D%/packages/patches/gnome-todo-libical-compat.patch		\
   %D%/packages/patches/gnome-tweak-tool-search-paths.patch	\
   %D%/packages/patches/gnucash-fix-test-transaction-failure.patch \
   %D%/packages/patches/gnutls-skip-trust-store-test.patch	\
@@ -890,7 +888,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/gtk2-respect-GUIX_GTK2_PATH.patch	\
   %D%/packages/patches/gtk2-respect-GUIX_GTK2_IM_MODULE_FILE.patch \
   %D%/packages/patches/gtk2-theme-paths.patch			\
-  %D%/packages/patches/gtk3-fix-deprecation-macro-use.patch	\
   %D%/packages/patches/gtk3-respect-GUIX_GTK3_PATH.patch	\
   %D%/packages/patches/gtk3-respect-GUIX_GTK3_IM_MODULE_FILE.patch \
   %D%/packages/patches/gtkglext-disable-disable-deprecated.patch \
@@ -1079,6 +1076,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/mozjs38-tracelogger.patch		\
   %D%/packages/patches/mozjs38-version-detection.patch		\
   %D%/packages/patches/mrrescue-support-love-11.patch		\
+  %D%/packages/patches/mrustc-0.8.0-fix-variable-length-integer-receiving.patch \
   %D%/packages/patches/mtools-mformat-uninitialized.patch	\
   %D%/packages/patches/mumble-1.2.19-abs.patch			\
   %D%/packages/patches/mumps-build-parallelism.patch		\
@@ -1211,6 +1209,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-pycrypto-CVE-2013-7459.patch	\
   %D%/packages/patches/python2-pygobject-2-gi-info-type-error-domain.patch \
   %D%/packages/patches/python-pygpgme-fix-pinentry-tests.patch	\
+  %D%/packages/patches/python-robotframework-honor-source-date-epoch.patch \
   %D%/packages/patches/python2-subprocess32-disable-input-test.patch	\
   %D%/packages/patches/python-unittest2-python3-compat.patch	\
   %D%/packages/patches/python-unittest2-remove-argparse.patch	\
@@ -1292,9 +1291,8 @@ dist_patch_DATA =						\
   %D%/packages/patches/teeworlds-use-latest-wavpack.patch	\
   %D%/packages/patches/texinfo-perl-compat.patch		\
   %D%/packages/patches/texinfo-5-perl-compat.patch		\
+  %D%/packages/patches/texlive-bin-CVE-2018-17407.patch		\
   %D%/packages/patches/texlive-bin-luatex-poppler-compat.patch	\
-  %D%/packages/patches/texlive-bin-pdftex-poppler-compat.patch	\
-  %D%/packages/patches/texlive-bin-xetex-poppler-compat.patch	\
   %D%/packages/patches/telegram-purple-adjust-test.patch	\
   %D%/packages/patches/texi2html-document-encoding.patch	\
   %D%/packages/patches/texi2html-i18n.patch			\
@@ -1307,6 +1305,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/tk-find-library.patch			\
   %D%/packages/patches/ttf2eot-cstddef.patch			\
   %D%/packages/patches/ttfautohint-source-date-epoch.patch	\
+  %D%/packages/patches/totem-meson-compat.patch			\
   %D%/packages/patches/totem-meson-easy-codec.patch		\
   %D%/packages/patches/tuxpaint-stamps-path.patch		\
   %D%/packages/patches/twinkle-include-qregexpvalidator.patch	\
@@ -1328,7 +1327,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/upower-builddir.patch			\
   %D%/packages/patches/upx-fix-CVE-2017-15056.patch		\
   %D%/packages/patches/valgrind-enable-arm.patch		\
-  %D%/packages/patches/valgrind-glibc-compat.patch		\
   %D%/packages/patches/vboot-utils-fix-format-load-address.patch	\
   %D%/packages/patches/vboot-utils-fix-tests-show-contents.patch	\
   %D%/packages/patches/vboot-utils-skip-test-workbuf.patch	\

gnu/packages/apr.scm

@@ -30,14 +30,14 @@
 (define-public apr
   (package
     (name "apr")
-    (version "1.6.3")
+    (version "1.6.5")
     (source (origin
              (method url-fetch)
              (uri (string-append "mirror://apache/apr/apr-"
                                  version ".tar.bz2"))
              (sha256
               (base32
-               "0wiik6amxn6lkc55fv9yz5i3kbxnqbp36alrzabx1avsdp8hc7qk"))
+               "01d1n1ql66bxsjx0wyzazmkqdqdmr0is6a7lwyy5kzy4z7yajz56"))
              (patches
               (search-patches "apr-skip-getservbyname-test.patch"))
              (patch-flags '("-p0"))))

gnu/packages/base.scm

@@ -1157,7 +1157,7 @@ command.")
 (define-public tzdata
   (package
     (name "tzdata")
-    (version "2018i")
+    (version "2019a")
     (source (origin
              (method url-fetch)
              (uri (string-append
@@ -1165,7 +1165,7 @@ command.")
                    version ".tar.gz"))
              (sha256
               (base32
-               "1n80ih8agibagic401smqscz3xxqvs5bm5x3lk803g539kw5xi42"))))
+               "0wlpqm4asvi0waaz24xj20iq40gqfypmb4nldjhkfgm09bgnsdlh"))))
     (build-system gnu-build-system)
     (arguments
      '(#:tests? #f
@@ -1215,7 +1215,7 @@ command.")
                                 version ".tar.gz"))
                           (sha256
                            (base32
-                            "1p1jxlnryaxknj0l768h3dmlk2jpqz5n5d24w9c9vyx6dj3xpb5a"))))))
+                            "1x9z8fpgnhzlsnps0hamb54ymaskjab7ys9m4i4gpk9hpiig2fc7"))))))
     (home-page "https://www.iana.org/time-zones")
     (synopsis "Database of current and historical time zones")
     (description "The Time Zone Database (often called tz or zoneinfo)

gnu/packages/build-tools.scm

@@ -160,7 +160,7 @@ files and generates build instructions for the Ninja build system.")
 (define-public meson
   (package
     (name "meson")
-    (version "0.49.0")
+    (version "0.50.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/mesonbuild/meson/"
@@ -168,7 +168,7 @@ files and generates build instructions for the Ninja build system.")
                                   version ".tar.gz"))
               (sha256
                (base32
-                "0l8m1v7cl5ybm7psfqmmdqbvmnsbb1qhb8ni3hwap3i0mk29a0zv"))))
+                "07q2wz23wjfk8z66mli1cc9as0ycjp5f39fd4awny82qv8nw86ra"))))
     (build-system python-build-system)
     (arguments
      `(;; FIXME: Tests require many additional inputs, a fix for the RUNPATH

gnu/packages/certs.scm

@@ -76,7 +76,7 @@
 (define-public nss-certs
   (package
     (name "nss-certs")
-    (version "3.41")
+    (version "3.43")
     (source (origin
               (method url-fetch)
               (uri (let ((version-with-underscores
@@ -87,7 +87,7 @@
                       "nss-" version ".tar.gz")))
               (sha256
                (base32
-                "0bbif42fzz5gk451sv3yphdrl7m4p6zgk5jk0307j06xs3sihbmb"))))
+                "1jp27w4w9nj5pkzrbc1zqj6pa09h2yy7vhzyx5fvg1q86fvw22zk"))))
     (build-system gnu-build-system)
     (outputs '("out"))
     (native-inputs

gnu/packages/cups.scm

@@ -57,7 +57,7 @@
 (define-public cups-filters
   (package
     (name "cups-filters")
-    (version "1.21.5")
+    (version "1.22.3")
     (source(origin
               (method url-fetch)
               (uri
@@ -65,7 +65,7 @@
                               "cups-filters-" version ".tar.xz"))
               (sha256
                (base32
-                "0azq9j7kqy18g6vgmvrbw8i4mcqdp3cbgh7q79x1b8p92w4si6rq"))
+                "11vilv80l3q7hz8vyhclvjcnlgk93r7p9dvg634186iddjzls0j3"))
               (modules '((guix build utils)))
               (snippet
                ;; install backends, banners and filters to cups-filters output
@@ -123,6 +123,12 @@
                           (("/usr/local/lib/cups/filter")
                            (string-append out "/lib/cups/filter")))
                         #t)))
+                  (add-after 'unpack 'patch-for-poppler
+                    (lambda _
+                      (substitute* "filter/pdf.cxx"
+                        (("GooString \\*field_name;" m)
+                         (string-append "const " m)))
+                      #t))
                   (add-after 'install 'wrap-filters
                     (lambda* (#:key inputs outputs #:allow-other-keys)
                       ;; Some filters expect to find 'gs' in $PATH.  We cannot
@@ -180,7 +186,7 @@ filters for the PDF-centric printing workflow introduced by OpenPrinting.")
 (define-public cups-minimal
   (package
     (name "cups-minimal")
-    (version "2.2.10")
+    (version "2.2.11")
     (source
      (origin
        (method url-fetch)
@@ -188,7 +194,7 @@ filters for the PDF-centric printing workflow introduced by OpenPrinting.")
                            version "/cups-" version "-source.tar.gz"))
        (sha256
         (base32
-         "1fq52aw1mini3ld2czv5gg37wbbvh4n7yc7wzzxvbs3zpfrv5j3p"))))
+         "0v5p10lyv8wv48s8ghkhjmdrxg6iwj8hn36v1ilkz46n7y0i107m"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags

gnu/packages/databases.scm

@@ -484,7 +484,7 @@ Language.")
 (define-public mariadb
   (package
     (name "mariadb")
-    (version "10.1.37")
+    (version "10.1.38")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://downloads.mariadb.org/f/"
@@ -492,7 +492,7 @@ Language.")
                                   name "-" version ".tar.gz"))
               (sha256
                (base32
-                "0ijdmdn9mcciwv361zfmja6b1h6qpbdqgrnnq6kkdapplyq1dmcc"))
+                "0zq77w3ff9q781fn8cv46vy1v4ggb8vjarjvk51k653x4gyg9wfa"))
               (patches (search-patches "mariadb-client-test-32bit.patch"))
               (modules '((guix build utils)))
               (snippet
@@ -571,7 +571,7 @@ Language.")
                       "roles.acl_statistics"
 
                       ;; This file contains a time bomb which makes it fail after
-                      ;; 2019-01-01.  See <https://bugs.gnu.org/34351> for details.
+                      ;; 2030-12-31.  See <https://bugs.gnu.org/34351> for details.
                       "main.mysqldump"
 
                       ;; XXX: Fails sporadically.
@@ -685,7 +685,7 @@ as a drop-in replacement of MySQL.")
               (patches (search-patches "postgresql-disable-resolve_symlinks.patch"))))
     (build-system gnu-build-system)
     (arguments
-     `(#:configure-flags '("--with-uuid=e2fs")
+     `(#:configure-flags '("--with-uuid=e2fs" "--with-openssl")
        #:phases
        (modify-phases %standard-phases
          (add-before 'configure 'patch-/bin/sh
@@ -704,6 +704,7 @@ as a drop-in replacement of MySQL.")
     (inputs
      `(("readline" ,readline)
        ("libuuid" ,util-linux)
+       ("openssl" ,openssl)
        ("zlib" ,zlib)))
     (home-page "https://www.postgresql.org/")
     (synopsis "Powerful object-relational database system")

gnu/packages/documentation.scm

@@ -123,7 +123,7 @@ markup) can be customized and extended by the user.")
 (define-public doxygen
   (package
     (name "doxygen")
-    (version "1.8.14")
+    (version "1.8.15")
     (home-page "http://www.doxygen.nl/")
     (source (origin
              (method url-fetch)
@@ -134,7 +134,7 @@ markup) can be customized and extended by the user.")
                                        ".src.tar.gz")))
              (sha256
               (base32
-               "0kcxymbam9jwiyjwyvwdjj0h74lbb6c467szsipzbxjyfl17wxfi"))
+               "0p94b4yb6bk2dxzs5kyl82xxgq2qakgbx5yy3ssbbadncb20x75x"))
              (patches (search-patches "doxygen-test.patch"))))
     (build-system cmake-build-system)
     (native-inputs

gnu/packages/elf.scm

@@ -41,14 +41,14 @@
 (define-public elfutils
   (package
     (name "elfutils")
-    (version "0.173")
+    (version "0.176")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://sourceware.org/elfutils/ftp/"
                                   version "/elfutils-" version ".tar.bz2"))
               (sha256
                (base32
-                "1zq0l12k64hrbjmdjc4llrad96c25i427hpma1id9nk87w9qqvdp"))
+                "08qhrl4g6qqr4ga46jhh78y56a47p3msa5b2x1qhzbxhf71lfmzb"))
               (patches (search-patches "elfutils-tests-ptrace.patch"))))
     (build-system gnu-build-system)
 

gnu/packages/emacs-xyz.scm

@@ -2600,6 +2600,31 @@ definitions, modules and classes, display method documentation and provide
 method and constant name completion.")
     (license license:gpl3+)))
 
+(define-public emacs-robot-mode
+  (let ((commit "32846e7e80ae3471b7c07f9709dcaa4f9b9ed4a0")
+        (revision "1"))
+    (package
+      (name "emacs-robot-mode")
+      (version (git-version "0.0.0" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      ;; A better maintained fork of robot-mode.
+                      (url "https://github.com/jvalkeejarvi/robot-mode.git")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "1i8wf7m0gml8zvvmlgppjzv78b432686p1qdbzgclc7qfcvzag0d"))))
+      (build-system emacs-build-system)
+      (propagated-inputs `(("emacs-s" ,emacs-s)))
+      (home-page "https://github.com/jvalkeejarvi/robot-mode")
+      (synopsis "Emacs mode for Robot Framework")
+      (description "This major mode facilitates editing Robot Framework source
+files with features such as syntax highlighting, comments, finding keywords,
+completing keywords and smart indentation.")
+      (license license:gpl3+))))
+
 (define-public emacs-rspec
   (package
     (name "emacs-rspec")

gnu/packages/fontutils.scm

@@ -389,25 +389,20 @@ X11-system or any other graphical user interface.")
 (define-public teckit
   (package
     (name "teckit")
-   (version "2.5.8")
+    (version "2.5.9")                   ;signed by key 0xC9183BEA0288CDEE
     (source
      (origin
-      (method git-fetch)
+       (method url-fetch)
-      (uri (git-reference
+       (uri (string-append "https://github.com/silnrsi/teckit/releases/"
-            (url "https://github.com/silnrsi/teckit")
+                           "download/v" version "/teckit-" version ".tar.gz"))
-            (commit (string-append "v" version))))
-      (file-name (git-file-name name version))
        (sha256
-       (base32 "1jmsdmfz7bgq1n5qsqgpq1b1n77f1hll0czfw5wkxz4knzb14ndn"))))
+        (base32 "0gbxyip4wdibirdg2pvzayzyy927vxyd6dfyfiflx8zg88qzn8v8"))))
     (build-system gnu-build-system)
     (inputs
      `(("zlib" ,zlib)
        ("expat" ,expat)))
     (native-inputs
-    `(("autoconf" ,autoconf)
+     `(("perl" ,perl)))                 ;for the tests
-      ("automake" ,automake)
-      ("libtool" ,libtool)
-      ("perl" ,perl))) ; for the tests
     (synopsis "Toolkit for encoding conversions")
     (description
      "TECkit is a low-level toolkit intended to be used by other applications
@@ -534,7 +529,7 @@ smooth contours with constant curvature at the spline joins.")
 (define-public libuninameslist
   (package
     (name "libuninameslist")
-    (version "20180701")
+    (version "20190305")
     (home-page "https://github.com/fontforge/libuninameslist")
     (source
      (origin
@@ -543,7 +538,7 @@ smooth contours with constant curvature at the spline joins.")
                            "/libuninameslist-dist-" version ".tar.gz"))
        (sha256
         (base32
-         "141wh2f5jsaw84mgw6vf2c9hd2wm957a2hpnicyqjbc7pk89gvca"))))
+         "1rwd2bgcyvign9agyjsr3v2fr9j1cg2wi6g0z2wwg1az32scknwq"))))
     (build-system gnu-build-system)
     (synopsis "Unicode names and annotation list")
     (description
@@ -560,14 +555,14 @@ definitions.")
 (define-public fontforge
   (package
    (name "fontforge")
-   (version "20170731")
+   (version "20190317")
    (source (origin
             (method url-fetch)
             (uri (string-append
                   "https://github.com/fontforge/fontforge/releases/download/"
-                  version "/fontforge-dist-" version ".tar.xz"))
+                  version "/fontforge-" version ".tar.gz"))
             (sha256 (base32
-                     "08l8h3yvk4v7652jvmd3ls7nf5miybkx2fmkf1mpwwfixpxxw2l4"))))
+                     "1ddqbpc32cgbccdnv0lfw0qhj59hcqzb7616ph5lkvm91pnas4dp"))))
    (build-system gnu-build-system)
    (native-inputs
     `(("pkg-config" ,pkg-config)))
@@ -614,11 +609,7 @@ definitions.")
                           "pango" "cairo" "fontconfig")))
                 ;; Checks for potrace program at runtime
                 `("PATH" ":" prefix (,potrace)))
-              #t))))
+              #t))))))
-
-      ;; Skip test 40 "FontForge .sfd file open check" to work around
-      ;; <https://github.com/fontforge/fontforge/issues/3246>.
-      #:make-flags '("TESTSUITEFLAGS=-k '!\\.sfd'")))
    (synopsis "Outline font editor")
    (description
     "FontForge allows you to create and modify postscript, truetype and

gnu/packages/freedesktop.scm

@@ -9,7 +9,7 @@
 ;;; Copyright © 2016 Kei Kebreau <kkebreau@posteo.net>
 ;;; Copyright © 2017, 2018 Mark H Weaver <mhw@netris.org>
 ;;; Copyright © 2017, 2018, 2019 Marius Bakke <mbakke@fastmail.com>
-;;; Copyright © 2017, 2018 Rutger Helling <rhelling@mykolab.com>
+;;; Copyright © 2017, 2018, 2019 Rutger Helling <rhelling@mykolab.com>
 ;;; Copyright © 2017 Brendan Tildesley <brendan.tildesley@openmailbox.org>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2018 Pierre Neidhardt <mail@ambrevar.xyz>
@@ -152,31 +152,30 @@ freedesktop.org project.")
 (define-public libinput
   (package
     (name "libinput")
-    (version "1.12.3")
+    (version "1.13.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://freedesktop.org/software/libinput/"
                                   "libinput-" version ".tar.xz"))
               (sha256
                (base32
-                "0mg2zqbjcgj0aq7d9nwawvyhx43vakilahrc83hrfyif3a3gyrpj"))))
+                "0vb11fzd06xbagrnha2bbzmlfg04bbgb5w5rjrxrrz686mfwj9zb"))))
     (build-system meson-build-system)
     (arguments
      `(#:configure-flags '("-Ddocumentation=false")))
     (native-inputs
      `(("check" ,check)
-       ("pkg-config" ,pkg-config)
+       ("pkg-config" ,pkg-config)))
-       ("valgrind" ,valgrind)))
-    (propagated-inputs
-     `(;; In Requires.private of libinput.pc.
-       ("libevdev" ,libevdev)
-       ("libudev" ,eudev)
-       ("libwacom" ,libwacom)
-       ("mtdev" ,mtdev)))
     (inputs
      `(("cairo" ,cairo)
        ("glib" ,glib)
-       ("gtk+" ,gtk+)))
+       ("gtk+" ,gtk+)
+       ("libevdev" ,libevdev)
+       ("libwacom" ,libwacom)
+       ("mtdev" ,mtdev)))
+    (propagated-inputs
+     `(;; libinput.h requires <libudev.h>, so propagate it.
+       ("udev" ,eudev)))
     (home-page "https://www.freedesktop.org/wiki/Software/libinput/")
     (synopsis "Input devices handling library")
     (description
@@ -187,9 +186,9 @@ other applications that need to directly deal with input devices.")
 (define-public libinput-minimal
   (package (inherit libinput)
     (name "libinput-minimal")
-    (inputs '())
+    (inputs
-    (propagated-inputs
+     (fold alist-delete (package-inputs libinput)
-     (alist-delete "libwacom" (package-propagated-inputs libinput)))
+           '("cairo" "glib" "gtk+" "libwacom")))
     (arguments
      (substitute-keyword-arguments (package-arguments libinput)
       ((#:configure-flags flags ''())
@@ -547,14 +546,14 @@ Python.")
 (define-public wayland
   (package
     (name "wayland")
-    (version "1.16.0")
+    (version "1.17.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://wayland.freedesktop.org/releases/"
                                   name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1xajhxad43izq9f7sbww1hlg42nayijy8xnp21kgpk09c6sw4wjf"))))
+                "194ibzwpdcn6fvk4xngr4bf5axpciwg2bj82fdvz88kfmjw13akj"))))
     (build-system gnu-build-system)
     (arguments
      `(#:parallel-tests? #f))

gnu/packages/gdb.scm

@@ -37,14 +37,14 @@
 (define-public gdb
   (package
     (name "gdb")
-    (version "8.2")
+    (version "8.2.1")
     (source (origin
              (method url-fetch)
              (uri (string-append "mirror://gnu/gdb/gdb-"
                                  version ".tar.xz"))
              (sha256
               (base32
-               "0fbw6j4z7kmvywwgavn7w3knp860i5i9qnjffc5p52bwkji43963"))))
+               "00i27xqawjv282a07i73lp1l02n0a3ywzhykma75qg500wll6sha"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f ; FIXME "make check" fails on single-processor systems.

gnu/packages/geo.scm

@@ -101,7 +101,7 @@ topology functions.")
 (define-public gnome-maps
   (package
     (name "gnome-maps")
-    (version "3.26.2")
+    (version "3.28.2")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://gnome/sources/" name "/"
@@ -109,7 +109,7 @@ topology functions.")
                                   name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0l40l7m9dyphvasiq1jxrn6ivavs1xwzn0bzz2x1z7x73955q783"))))
+                "1yzi08a9316jplgsl2z0qzlqxhghyqcjhv0m6i94wcain4mxk1z7"))))
     (build-system glib-or-gtk-build-system)
     (arguments
      `(#:configure-flags ;; Ensure that geoclue is referred to by output.

gnu/packages/gl.scm

@@ -8,7 +8,7 @@
 ;;; Copyright © 2016 David Thompson <davet@gnu.org>
 ;;; Copyright © 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net>
-;;; Copyright © 2017, 2018 Rutger Helling <rhelling@mykolab.com>
+;;; Copyright © 2017, 2018, 2019 Rutger Helling <rhelling@mykolab.com>
 ;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;;
 ;;; This file is part of GNU Guix.
@@ -221,7 +221,7 @@ also known as DXTn or DXTC) for Mesa.")
 (define-public mesa
   (package
     (name "mesa")
-    (version "18.3.1")
+    (version "18.3.5")
     (source
       (origin
         (method url-fetch)
@@ -233,10 +233,10 @@ also known as DXTn or DXTC) for Mesa.")
                                   version "/mesa-" version ".tar.xz")))
         (sha256
          (base32
-          "0qyw9dj2p9n91qzc4ylck2an7ibssjvzi2bjcpv2ajk851yq47sv"))
+          "0lvrfjaic7dhay9v52f9k3q5aac8xagfq3pnzjrl0cn65jlaw9s0"))
         (patches
          (search-patches "mesa-skip-disk-cache-test.patch"))))
-    (build-system gnu-build-system)
+    (build-system meson-build-system)
     (propagated-inputs
       `(;; The following are in the Requires.private field of gl.pc.
         ("libdrm" ,libdrm)
@@ -257,14 +257,17 @@ also known as DXTn or DXTC) for Mesa.")
         ("libxvmc" ,libxvmc)
         ,@(match (%current-system)
             ((or "x86_64-linux" "i686-linux")
-             `(("llvm" ,llvm-6))) ;TODO: Change to LLVM in the next rebuild cycle.
+             `(("llvm" ,llvm)))
             (_
              `()))
         ("makedepend" ,makedepend)
         ("wayland" ,wayland)
         ("wayland-protocols" ,wayland-protocols)))
     (native-inputs
-      `(("pkg-config" ,pkg-config)
+      `(("bison" ,bison)
+        ("flex" ,flex)
+        ("gettext" ,gettext-minimal)
+        ("pkg-config" ,pkg-config)
         ("python" ,python)
         ("python-mako" ,python-mako)
         ("which" ,(@ (gnu packages base) which))))
@@ -273,47 +276,48 @@ also known as DXTn or DXTC) for Mesa.")
        '(,@(match (%current-system)
              ((or "armhf-linux" "aarch64-linux")
               ;; TODO: Fix svga driver for aarch64 and armhf.
-              '("--with-gallium-drivers=etnaviv,freedreno,imx,nouveau,pl111,r300,r600,swrast,tegra,v3d,vc4,virgl"))
+              '("-Dgallium-drivers=etnaviv,freedreno,imx,nouveau,pl111,r300,r600,swrast,tegra,v3d,vc4,virgl"))
              (_
-              '("--with-gallium-drivers=i915,nouveau,r300,r600,radeonsi,svga,swrast,virgl")))
+              '("-Dgallium-drivers=nouveau,r300,r600,radeonsi,svga,swrast,virgl")))
          ;; Enable various optional features.  TODO: opencl requires libclc,
          ;; omx requires libomxil-bellagio
-         "--with-platforms=x11,drm,surfaceless,wayland"
+         "-Dplatforms=x11,drm,surfaceless,wayland"
-         "--enable-glx-tls"        ;Thread Local Storage, improves performance
+         "-Dglx=dri"        ;Thread Local Storage, improves performance
-         ;; "--enable-opencl"
+         ;; "-Dopencl=true"
-         ;; "--enable-omx"
+         ;; "-Domx=true"
-         "--enable-osmesa"
+         "-Dosmesa=gallium"
-         "--enable-xa"
+         "-Dgallium-xa=true"
+
          ;; features required by wayland
-         "--enable-gles2"
+         "-Dgles2=true"
-         "--enable-gbm"
+         "-Dgbm=true"
-         "--enable-shared-glapi"
+         "-Dshared-glapi=true"
 
          ;; Enable Vulkan on i686-linux and x86-64-linux.
          ,@(match (%current-system)
              ("x86_64-linux"
-              '("--with-vulkan-drivers=intel,radeon"))
+              '("-Dvulkan-drivers=intel,amd"))
              ;; TODO: Fix intel driver on i686-linux.
              ("i686-linux"
-              '("--with-vulkan-drivers=radeon"))
+              '("-Dvulkan-drivers=amd"))
              (_
-              '("")))
+              '("-Dvulkan-drivers=auto")))
 
          ;; Also enable the tests.
-         "--enable-gallium-tests"
+         "-Dbuild-tests=true"
 
          ;; on non-intel systems, drop i915 and i965
          ;; from the default dri drivers
          ,@(match (%current-system)
              ((or "x86_64-linux" "i686-linux")
-              '("--with-dri-drivers=i915,i965,nouveau,r200,radeon,swrast"
+              '("-Ddri-drivers=i915,i965,nouveau,r200,r100"
-                "--enable-llvm"))         ; default is x86/x86_64 only
+                "-Dllvm=true"))         ; default is x86/x86_64 only
              (_
-              '("--with-dri-drivers=nouveau,r200,radeon,swrast"))))
+              '("-Ddri-drivers=nouveau,r200,r100"))))
        #:modules ((ice-9 match)
                   (srfi srfi-1)
                   (guix build utils)
-                  (guix build gnu-build-system))
+                  (guix build meson-build-system))
        #:phases
        (modify-phases %standard-phases
          (add-after
@@ -323,7 +327,7 @@ also known as DXTn or DXTC) for Mesa.")
                (("/usr/bin/env python2") (which "python")))
              #t))
          (add-before
-           'build 'fix-dlopen-libnames
+           'configure 'fix-dlopen-libnames
            (lambda* (#:key inputs outputs #:allow-other-keys)
              (let ((out (assoc-ref outputs "out")))
                ;; Remain agnostic to .so.X.Y.Z versions while doing

gnu/packages/glib.scm

@@ -509,7 +509,7 @@ has an ease of use unmatched by other C++ callback libraries.")
 (define glibmm
   (package
     (name "glibmm")
-    (version "2.54.1")
+    (version "2.56.0")
     (source (origin
              (method url-fetch)
              (uri (string-append "mirror://gnome/sources/glibmm/"
@@ -517,7 +517,7 @@ has an ease of use unmatched by other C++ callback libraries.")
                                  "/glibmm-" version ".tar.xz"))
              (sha256
               (base32
-               "0jkapw18icz59cmlmsl00nwwz0wh291kb4hc9z9hxmq45drqrhkw"))))
+               "1abrkqhca5p8n6ly3vp1232rny03s7lrd8f8iz2m2m141nxgqx3f"))))
     (build-system gnu-build-system)
     (arguments
      `(;; XXX: Some tests uses C++14 features.  Remove this when the default

gnu/packages/gtk.scm

@@ -85,7 +85,7 @@
 (define-public atk
   (package
    (name "atk")
-   (version "2.28.1")
+   (version "2.32.0")
    (source (origin
             (method url-fetch)
             (uri (string-append "mirror://gnome/sources/" name "/"
@@ -93,17 +93,12 @@
                                 name "-" version ".tar.xz"))
             (sha256
              (base32
-              "1z7laf6qwv5zsqcnj222dm5f43c6f3liil0cgx4s4s62xjk1wfnd"))))
+              "1k4i817bd2w5b9z394f2yyx95591l2746wa40am0vvz4gzdgwhfb"))))
-   (build-system gnu-build-system)
+   (build-system meson-build-system)
-   (outputs '("out" "doc"))
-   (arguments
-    `(#:configure-flags
-      (list (string-append "--with-html-dir="
-                           (assoc-ref %outputs "doc")
-                           "/share/gtk-doc/html"))))
    (propagated-inputs `(("glib" ,glib))) ; required by atk.pc
    (native-inputs
     `(("pkg-config" ,pkg-config)
+      ("gettext" ,gettext-minimal)
       ("glib" ,glib "bin")                               ; glib-mkenums, etc.
       ("gobject-introspection" ,gobject-introspection))) ; g-ir-compiler, etc.
    (synopsis "GNOME accessibility toolkit")
@@ -399,7 +394,7 @@ printing and other features typical of a source code editor.")
 (define-public gtksourceview
  (package
    (name "gtksourceview")
-   (version "3.24.10")
+   (version "4.0.2")
    (source (origin
              (method url-fetch)
              (uri (string-append "mirror://gnome/sources/gtksourceview/"
@@ -407,7 +402,7 @@ printing and other features typical of a source code editor.")
                                  "gtksourceview-" version ".tar.xz"))
              (sha256
               (base32
-               "16ym7jwiki4s1pilwr4incx0yg7ll94f1cajrnpndkxxs36hcm5b"))))
+               "1b2z9c0skxrgw2vh08hv6qxky8jbvamc4rgww82j0kpp533rz0hm"))))
    (build-system gnu-build-system)
    (arguments
     '(#:phases
@@ -444,10 +439,10 @@ GTK+ text widget GtkTextView.  It improves GtkTextView by implementing syntax
 highlighting and other features typical of a source code editor.")
    (license license:lgpl2.1+)))
 
-(define-public gdk-pixbuf
+(define-public gtksourceview-3
-  (package
+ (package (inherit gtksourceview)
-   (name "gdk-pixbuf")
+   (name "gtksourceview")
-   (version "2.38.0")
+   (version "3.24.10")
    (source (origin
              (method url-fetch)
              (uri (string-append "mirror://gnome/sources/" name "/"
@@ -455,7 +450,20 @@ highlighting and other features typical of a source code editor.")
                                  name "-" version ".tar.xz"))
              (sha256
               (base32
-              "0ixfmnxjylx06mjaw116apymwi1a8rnkmkbbvqaxxg2pfwy9fl6x"))))
+               "16ym7jwiki4s1pilwr4incx0yg7ll94f1cajrnpndkxxs36hcm5b"))))))
+
+(define-public gdk-pixbuf
+  (package
+   (name "gdk-pixbuf")
+   (version "2.38.1")
+   (source (origin
+            (method url-fetch)
+            (uri (string-append "mirror://gnome/sources/" name "/"
+                                (version-major+minor version)  "/"
+                                name "-" version ".tar.xz"))
+            (sha256
+             (base32
+              "0fmbjgjcyym3qg46f64qgl7icdm4ii77flyc1mhk244rp8vgi7zi"))))
    (build-system meson-build-system)
    (arguments
     `(#:configure-flags '("-Dinstalled_tests=false")
@@ -547,39 +555,64 @@ in the GNOME project.")
 (define-public at-spi2-core
   (package
    (name "at-spi2-core")
-   (version "2.26.2")
+   (version "2.32.0")
    (source (origin
             (method url-fetch)
             (uri (string-append "mirror://gnome/sources/" name "/"
                                 (version-major+minor version)  "/"
                                 name "-" version ".tar.xz"))
+            (patches (search-patches "at-spi2-core-meson-compat.patch"))
             (sha256
              (base32
-              "0596ghkamkxgv08r4a1pdhm06qd5zzgcfqsv64038w9xbvghq3n8"))))
+              "083j1v7kdjrpjsv1b9dl3d8xqj39jyp4cfn8i9gbbm7q2g93b923"))))
-   (build-system gnu-build-system)
+   (build-system meson-build-system)
    (outputs '("out" "doc"))
    (arguments
     '(#:configure-flags
-      (list (string-append "--with-html-dir="
+      (list "-Ddocs=true")
-                           (assoc-ref %outputs "doc")
-                           "/share/gtk-doc/html"))
       #:phases
       (modify-phases %standard-phases
-        (replace 'check
+        (add-after 'unpack 'set-documentation-path
-                 ;; Run test-suite under a dbus session.
+          (lambda* (#:key outputs #:allow-other-keys)
+            ;; Ensure that the cross-references point to the "doc" output.
+            (substitute* "doc/libatspi/meson.build"
+              (("docpath =.*")
+               (string-append "docpath = '" (assoc-ref outputs "doc") "/share/gtk-doc/html'\n")))
+            #t))
+        (add-before 'install 'prepare-doc-directory
+          (lambda* (#:key outputs #:allow-other-keys)
+            (mkdir-p (string-append (assoc-ref outputs "doc") "/share"))
+            #t))
+        (add-after 'install 'move-documentation
+          (lambda* (#:key outputs #:allow-other-keys)
+            (let ((out (assoc-ref outputs "out"))
+                  (doc (assoc-ref outputs "doc")))
+              (copy-recursively
+               (string-append out "/share/gtk-doc")
+               (string-append doc "/share/gtk-doc"))
+              (delete-file-recursively
+               (string-append out "/share/gtk-doc")))
+            #t))
+        (add-after 'install 'check
           (lambda _
+            (setenv "HOME" (getenv "TMPDIR")) ; xfconfd requires a writable HOME
+            ;; Run test-suite under a dbus session.
+            (setenv "XDG_DATA_DIRS"     ; for finding org.xfce.Xfconf.service
+                    (string-append %output "/share"))
             ;; Don't fail on missing  '/etc/machine-id'.
-                   (setenv "DBUS_FATAL_WARNINGS" "0")
+            (setenv "DBUS_FATAL_WARNINGS" "0") ;
-                   (invoke "dbus-launch" "make" "check"))))))
+            (invoke "dbus-launch" "ninja" "test")))
+         (delete 'check))))
    (propagated-inputs
     ;; atspi-2.pc refers to all these.
     `(("dbus" ,dbus)
-      ("glib" ,glib)))
+      ("glib" ,glib)
-   (inputs
+      ("libxi" ,libxi)
-    `(("libxi" ,libxi)
       ("libxtst" ,libxtst)))
    (native-inputs
     `(("gobject-introspection" ,gobject-introspection)
+      ("gtk-doc" ,gtk-doc)
+      ("glib" ,glib "bin")
       ("intltool" ,intltool)
       ("pkg-config" ,pkg-config)))
    (synopsis "Assistive Technology Service Provider Interface, core components")
@@ -592,7 +625,7 @@ is part of the GNOME accessibility project.")
 (define-public at-spi2-atk
   (package
    (name "at-spi2-atk")
-   (version "2.26.2")
+   (version "2.32.0")
    (source (origin
             (method url-fetch)
             (uri (string-append "mirror://gnome/sources/" name "/"
@@ -600,8 +633,8 @@ is part of the GNOME accessibility project.")
                                 name "-" version ".tar.xz"))
             (sha256
              (base32
-              "0vkan52ab9vrkknnv8y4f1cspk8x7xd10qx92xk9ys71p851z2b1"))))
+              "0p54wx6f6q7s8w0b1j0sgw87pikllp79q5g3lfiwqazs779ycl8b"))))
-   (build-system gnu-build-system)
+   (build-system meson-build-system)
    (arguments
     '(#:phases
       (modify-phases %standard-phases
@@ -609,14 +642,16 @@ is part of the GNOME accessibility project.")
                  ;; Run test-suite under a dbus session.
                  (lambda _
                    (setenv "DBUS_FATAL_WARNINGS" "0")
-                   (invoke "dbus-launch" "make" "check"))))))
+                   (invoke "dbus-launch" "meson" "test"))))))
    (propagated-inputs
     `(("at-spi2-core" ,at-spi2-core))) ; required by atk-bridge-2.0.pc
    (inputs
     `(("atk" ,atk)))
    (native-inputs
-    `(("dbus" ,dbus) ; for testing
+    `(("pkg-config" ,pkg-config)
-      ("pkg-config" ,pkg-config)))
+      ;; For tests.
+      ("dbus" ,dbus)
+      ("libxml2" ,libxml2)))
    (synopsis "Assistive Technology Service Provider Interface, ATK bindings")
    (description
     "The Assistive Technology Service Provider Interface
@@ -693,8 +728,7 @@ application suites.")
    (name "gtk+")
    ;; NOTE: When updating the version of 'gtk+', the hash of 'mate-themes' in
    ;;       mate.scm will also need to be updated.
-   (version "3.24.2")
+   (version "3.24.7")
-   (replacement gtk+/fixed)
    (source (origin
             (method url-fetch)
             (uri (string-append "mirror://gnome/sources/" name "/"
@@ -702,7 +736,7 @@ application suites.")
                                 name "-" version ".tar.xz"))
             (sha256
              (base32
-              "14l8mimdm44r3h5pn5hzigl1z25jna8jxvb16l88v4nc4zj0afsv"))
+              "080m925dyhiidlhsxqzx040l4iha2gg38pzbfpnsnjyzl92124jj"))
             (patches (search-patches "gtk3-respect-GUIX_GTK3_PATH.patch"
                                      "gtk3-respect-GUIX_GTK3_IM_MODULE_FILE.patch"))
             (modules '((guix build utils)))
@@ -788,18 +822,6 @@ application suites.")
            (variable "GUIX_GTK3_PATH")
            (files '("lib/gtk-3.0")))))))
 
-;; Fixes a bug in Gtk that causes crashes in IceCat and Emacs.
-;; See <https://bugs.gnu.org/34454>, <https://bugs.gnu.org/34658>,
-;; and <https://gitlab.gnome.org/GNOME/gtk/issues/1523>.
-(define gtk+/fixed
-  (package
-    (inherit gtk+)
-    (source (origin
-              (inherit (package-source gtk+))
-              (patches
-               (cons (search-patch "gtk3-fix-deprecation-macro-use.patch")
-                     (origin-patches (package-source gtk+))))))))
-
 ;;;
 ;;; Guile bindings.
 ;;;
@@ -1420,7 +1442,7 @@ information.")
 (define-public gtk-doc
   (package
     (name "gtk-doc")
-    (version "1.27")
+    (version "1.28")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://gnome/sources/" name "/"
@@ -1428,7 +1450,7 @@ information.")
                                   name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0vwsdl61nvnmqswlz5j9m4hg7qirhazwcikcnqf9nx0c13vx6sz2"))))
+                "05apmwibkmn1icx05l8aw241lhymcx01zvk5i499cb150bijj7li"))))
     (build-system gnu-build-system)
     (arguments
      `(#:parallel-tests? #f

gnu/packages/imagemagick.scm

@@ -48,14 +48,14 @@
     ;; The 7 release series has an incompatible API, while the 6 series is still
     ;; maintained. Don't update to 7 until we've made sure that the ImageMagick
     ;; users are ready for the 7-series API.
-    (version "6.9.10-16")
+    (version "6.9.10-35")
     (source (origin
              (method url-fetch)
              (uri (string-append "mirror://imagemagick/ImageMagick-"
                                  version ".tar.xz"))
              (sha256
               (base32
-               "1ylbv69r8l3d4za4i8q41cs6lq06mnhiq4qm03rvs3vp3gyp1m9x"))))
+               "1mc7f1i29w27nqsc8gmlqxyid16ik4ys0razggwajzs7mhxy3g8g"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags '("--with-frozenpaths" "--without-gcc-arch")

gnu/packages/libffi.scm

@@ -4,7 +4,7 @@
 ;;; Copyright © 2015, 2019 Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
 ;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016, 2017 Ben Woodcroft <donttrustben@gmail.com>
-;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com>
+;;; Copyright © 2017, 2019 Marius Bakke <mbakke@fastmail.com>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;;
 ;;; This file is part of GNU Guix.
@@ -92,14 +92,12 @@ conversions for values passed between the two languages.")
        (base32 "1x3lrj928dcxx1k8k9gf3s4s3jwvzv8mc3kkyg1g7c3a1sc1f3z9"))
       (patches (search-patches "python-cffi-x87-stack-clean.patch"))))
     (build-system python-build-system)
-    (outputs '("out" "doc"))
     (inputs
      `(("libffi" ,libffi)))
     (propagated-inputs ; required at run-time
      `(("python-pycparser" ,python-pycparser)))
     (native-inputs
      `(("pkg-config" ,pkg-config)
-       ("python-sphinx" ,python-sphinx)
        ("python-pytest" ,python-pytest)))
     (arguments
      `(#:modules ((ice-9 ftw)
@@ -134,17 +132,7 @@ conversions for values passed between the two languages.")
            (lambda _
              (substitute* "testing/cffi0/test_ownlib.py"
                (("ret.left") "ownlib.left"))
-             #t))
+             #t)))))
-         (add-after 'install 'install-doc
-           (lambda* (#:key outputs (make-flags '())  #:allow-other-keys)
-             (let* ((doc (string-append (assoc-ref outputs "doc")
-                                        "/share/doc/" ,name "-" ,version))
-                    (html (string-append doc "/html")))
-               (with-directory-excursion "doc"
-                 (apply invoke "make" "html" make-flags)
-                 (mkdir-p html)
-                 (copy-recursively "build/html" html))
-               #t))))))
     (home-page "https://cffi.readthedocs.org")
     (synopsis "Foreign function interface for Python")
     (description
@@ -154,6 +142,35 @@ conversions for values passed between the two languages.")
 (define-public python2-cffi
   (package-with-python2 python-cffi))
 
+(define-public python-cffi-documentation
+  (package
+    (name "python-cffi-documentation")
+    (version (package-version python-cffi))
+    (source (package-source python-cffi))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:tests? #f
+       #:phases (modify-phases %standard-phases
+                  (add-after 'unpack 'chdir
+                    (lambda _ (chdir "doc") #t))
+                  (delete 'configure)
+                  (replace 'build
+                    (lambda* (#:key (make-flags '()) #:allow-other-keys)
+                      (apply invoke "make" "html" make-flags)))
+                  (replace 'install
+                    (lambda* (#:key outputs #:allow-other-keys)
+                      (let ((out (assoc-ref outputs "out")))
+                        (copy-recursively "build/html" (string-append out "/html"))
+                        #t))))))
+    (native-inputs
+     `(("sphinx-build" ,python-sphinx)))
+    (home-page (package-home-page python-cffi))
+    (synopsis "Documentation for the Python CFFI interface")
+    (description
+     "This package contains HTML documentation for the @code{python-cffi}
+project.")
+    (license (package-license python-cffi))))
+
 (define-public ruby-ffi
   (package
     (name "ruby-ffi")

gnu/packages/linux.scm

@@ -15,7 +15,7 @@
 ;;; Copyright © 2016, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2016 David Craven <david@craven.ch>
 ;;; Copyright © 2016 John Darrington <jmd@gnu.org>
-;;; Copyright © 2016, 2017, 2018 Marius Bakke <mbakke@fastmail.com>
+;;; Copyright © 2016, 2017, 2018, 2019 Marius Bakke <mbakke@fastmail.com>
 ;;; Copyright © 2016, 2018 Rene Saavedra <pacoon@protonmail.com>
 ;;; Copyright © 2016 Carlos Sánchez de La Lama <csanchezdll@gmail.com>
 ;;; Copyright © 2016, 2017 ng0 <ng0@n0.is>
@@ -1073,7 +1073,7 @@ intercept and print the system calls executed by the program.")
 (define-public alsa-lib
   (package
     (name "alsa-lib")
-    (version "1.1.7")
+    (version "1.1.8")
     (source (origin
              (method url-fetch)
              (uri (string-append
@@ -1081,7 +1081,7 @@ intercept and print the system calls executed by the program.")
                    version ".tar.bz2"))
              (sha256
               (base32
-               "02fw7dw202mjid49w9ki3dsfcyvid5fj488561bdzcm3haw00q4x"))))
+               "1pxf0zkmps03l3zzd0fr828xhkg6a8hxljmbxzc2cyj2ls9kmp1w"))))
     (build-system gnu-build-system)
     (home-page "https://www.alsa-project.org/")
     (synopsis "The Advanced Linux Sound Architecture libraries")
@@ -1093,14 +1093,14 @@ MIDI functionality to the Linux-based operating system.")
 (define-public alsa-utils
   (package
     (name "alsa-utils")
-    (version "1.1.7")
+    (version "1.1.8")
     (source (origin
              (method url-fetch)
              (uri (string-append "ftp://ftp.alsa-project.org/pub/utils/"
                                  name "-" version ".tar.bz2"))
              (sha256
               (base32
-               "02jlw6a22j2rr7inggfgk2hzx3w0fjhvhs0dn1afpzdp9aspzchx"))))
+               "1kx45yhrxai3k595yyqs4wj0p2n5b0c9mf0k36ljjf1bj8lgb6zx"))))
     (build-system gnu-build-system)
     (arguments
      ;; XXX: Disable man page creation until we have DocBook.
@@ -1113,6 +1113,13 @@ MIDI functionality to the Linux-based operating system.")
                                               "/lib/udev/rules.d"))
        #:phases
        (modify-phases %standard-phases
+         (add-before 'check 'disable-broken-test
+           (lambda _
+             ;; XXX: The 1.1.8 release tarball is missing a header that's
+             ;; required for this test to work.  Fixed in 1.1.9.
+             (substitute* "axfer/test/Makefile"
+               ((".*container-test.*") ""))
+             #t))
          (add-before
            'install 'pre-install
            (lambda _
@@ -1140,14 +1147,14 @@ MIDI functionality to the Linux-based operating system.")
 (define-public alsa-plugins
   (package
     (name "alsa-plugins")
-    (version "1.1.7")
+    (version "1.1.8")
     (source (origin
              (method url-fetch)
              (uri (string-append "ftp://ftp.alsa-project.org/pub/plugins/"
                                  name "-" version ".tar.bz2"))
              (sha256
               (base32
-               "0iys4zl1davzyg3mn9lvil1n3k1ifrg3v1caj3k4dqyrnrd40jx7"))))
+               "152r82i6f97gfilfgiax5prxkd4xlcipciv8ha8yrk452qbxyxvz"))))
     (build-system gnu-build-system)
     ;; TODO: Split libavcodec and speex if possible. It looks like they can not
     ;; be split, there are references to both in files.
@@ -2108,7 +2115,7 @@ to use Linux' inotify mechanism, which allows file accesses to be monitored.")
 (define-public kmod
   (package
     (name "kmod")
-    (version "25")
+    (version "26")
     (source (origin
               (method url-fetch)
               (uri
@@ -2116,7 +2123,7 @@ to use Linux' inotify mechanism, which allows file accesses to be monitored.")
                               "kmod-" version ".tar.xz"))
               (sha256
                (base32
-                "1kgixs4m3jvwk7fb3d18n6j77qhgi9qfv4csj35rs5ancr4ycrbi"))
+                "17dvrls70nr3b3x1wm8pwbqy4r8a5c20m0dhys8mjhsnpg425fsp"))
               (patches (search-patches "kmod-module-directory.patch"))))
     (build-system gnu-build-system)
     (native-inputs

gnu/packages/maths.scm

@@ -324,15 +324,16 @@ enough to be used effectively as a scientific calculator.")
 (define-public double-conversion
   (package
     (name "double-conversion")
-    (version "3.1.0")
+    (version "3.1.4")
     (home-page "https://github.com/google/double-conversion")
     (source (origin
               (method git-fetch)
-              (uri (git-reference (url home-page) (commit version)))
+              (uri (git-reference (url home-page)
+                                  (commit (string-append "v" version))))
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "123rb2p4snqagrybw66vnapchqdwn2rfpr1wcq0ya9gwbyl7xccx"))))
+                "13xwcqk2c0q8c1siw566clxcpvp0xrxvb72mra42wa3nvq9wlsv6"))))
     (build-system cmake-build-system)
     (arguments
      '(#:test-target "test"
@@ -2972,7 +2973,7 @@ parts of it.")
 (define-public openblas
   (package
     (name "openblas")
-    (version "0.3.4")
+    (version "0.3.5")
     (source
      (origin
        (method url-fetch)
@@ -2981,7 +2982,7 @@ parts of it.")
        (file-name (string-append name "-" version ".tar.gz"))
        (sha256
         (base32
-         "1s56lgilyyw86dzmj3jkci9zsg24n60wq4d0zri1hrxlxb6ihimj"))))
+         "062kg4ny1ywz7k5grpb4pbf0hba0w6manbajwkmv4f477a31sxpl"))))
     (build-system gnu-build-system)
     (arguments
      `(#:test-target "test"
@@ -2997,6 +2998,7 @@ parts of it.")
        #:make-flags
        (list (string-append "PREFIX=" (assoc-ref %outputs "out"))
              "SHELL=bash"
+             "MAKE_NB_JOBS=0"           ;use jobserver for submakes
              ;; Build the library for all supported CPUs.  This allows
              ;; switching CPU targets at runtime with the environment variable
              ;; OPENBLAS_CORETYPE=<type>, where "type" is a supported CPU type.

gnu/packages/networking.scm

@@ -1182,8 +1182,7 @@ sockets in Perl.")
      `(("pkg-config" ,pkg-config)))
     (inputs
      `(("dbus" ,dbus)
-       ("zlib" ,zlib)
+       ("zlib" ,zlib)))
-       ("network-manager" ,network-manager)))
     (arguments
      `(#:phases
        (modify-phases %standard-phases

gnu/packages/ninja.scm

@@ -30,7 +30,7 @@
 (define-public ninja
   (package
     (name "ninja")
-    (version "1.8.2")
+    (version "1.9.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/martine/ninja/"
@@ -38,7 +38,7 @@
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "1x66q6494ml1p1f74mxzik1giakl4zj7rxig9jsc50087l671f46"))))
+                "1ffmzj5s9h98qhl94d9i23zcv057rsqbac9g1hdgvlzq51ccfzjx"))))
     (build-system gnu-build-system)
     (native-inputs `(("python" ,python-2)))
     (arguments

gnu/packages/nss.scm

@@ -34,7 +34,7 @@
 (define-public nspr
   (package
     (name "nspr")
-    (version "4.20")
+    (version "4.21")
     (source (origin
              (method url-fetch)
              (uri (string-append
@@ -42,7 +42,7 @@
                    version "/src/nspr-" version ".tar.gz"))
              (sha256
               (base32
-               "0vjms4j75zvv5b2siyafg7hh924ysx2cwjad8spzp7x87n8n929c"))))
+               "0nkbgk0x31nfm4xl8la0a3vrnpa8gzkh7g4k65p7n880n73k5shm"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("perl" ,perl)))
@@ -70,7 +70,7 @@ in the Mozilla clients.")
 (define-public nss
   (package
     (name "nss")
-    (version "3.41")
+    (version "3.43")
     (source (origin
               (method url-fetch)
               (uri (let ((version-with-underscores
@@ -81,7 +81,7 @@ in the Mozilla clients.")
                       "nss-" version ".tar.gz")))
               (sha256
                (base32
-                "0bbif42fzz5gk451sv3yphdrl7m4p6zgk5jk0307j06xs3sihbmb"))
+                "1jp27w4w9nj5pkzrbc1zqj6pa09h2yy7vhzyx5fvg1q86fvw22zk"))
               ;; Create nss.pc and nss-config.
               (patches (search-patches "nss-pkgconfig.patch"
                                        "nss-increase-test-timeout.patch"))))
@@ -129,7 +129,7 @@ in the Mozilla clients.")
              ;; leading to test failures:
              ;; <https://bugzilla.mozilla.org/show_bug.cgi?id=609734>.  To
              ;; work around that, set the time to roughly the release date.
-             (invoke "faketime" "2018-12-01" "./nss/tests/all.sh")))
+             (invoke "faketime" "2019-02-01" "./nss/tests/all.sh")))
            (replace 'install
              (lambda* (#:key outputs #:allow-other-keys)
                (let* ((out (assoc-ref outputs "out"))

gnu/packages/patches/at-spi2-core-meson-compat.patch

@@ -0,0 +1,18 @@
+Fix build with Meson 0.50.0 and above.
+
+Taken from upstream repository:
+https://gitlab.gnome.org/GNOME/at-spi2-core/commit/44a812ea51223d82f21a098a2d45fcc5c329ce7a
+
+diff --git a/atspi/meson.build b/atspi/meson.build
+index b7a9357df1c4857dffa2ec123cd3073e67a07fea..2a6915d76202dabf923b50e6a8b85cbb83cb43d0 100644
+--- a/atspi/meson.build
++++ b/atspi/meson.build
+@@ -57,7 +57,7 @@ atspi_headers = [
+ 
+ atspi_includedir = join_paths(get_option('prefix'), get_option('includedir'), 'at-spi-2.0', 'atspi')
+ 
+-install_headers(atspi_headers, subdir: atspi_includedir)
++install_headers(atspi_headers, install_dir: atspi_includedir)
+ 
+ atspi_enums = gnome.mkenums('atspi-enum-types',
+                             sources: [ 'atspi-constants.h', 'atspi-types.h' ],

gnu/packages/patches/doxygen-test.patch

@@ -5,14 +5,14 @@ test.
 diff -u -r doxygen-1.8.7.orig/testing/012/citelist.xml doxygen-1.8.7/testing/012/citelist.xml
 --- doxygen-1.8.7.orig/testing/012/citelist.xml	2014-04-24 23:43:34.000000000 +0200
 +++ doxygen-1.8.7/testing/012/citelist.xml	2014-04-24 23:49:43.000000000 +0200
-@@ -4,17 +4,6 @@
+@@ -6,17 +6,6 @@
-     <compoundname>citelist</compoundname>
+     <briefdescription>
-     <title>Bibliography</title>
+     </briefdescription>
      <detaileddescription>
 -      <para>
 -        <variablelist>
 -          <varlistentry>
--            <term><anchor id="_1CITEREF_knuth79"/>[1]</term>
+-            <term><anchor id="citelist_1CITEREF_knuth79"/>[1]</term>
 -          </varlistentry>
 -          <listitem>
 -            <para>Donald<nonbreakablespace/>E. Knuth. <emphasis>Tex and Metafont, New Directions in Typesetting</emphasis>. American Mathematical Society and Digital Press, Stanford, 1979.</para>

gnu/packages/patches/gcr-disable-failing-tests.patch

@@ -1,126 +0,0 @@
-This patch removes a group of tests that fail because /var/lib/dbus/machine-id
-is not present in the build environment.
-
---- gcr-3.20.0.old/Makefile.in	2017-07-03 18:05:10.742595317 -0400
-+++ gcr-3.20.0/Makefile.in	2017-07-03 18:08:26.379565428 -0400
-@@ -482,8 +482,7 @@
- 	test-openssh$(EXEEXT) test-secure-memory$(EXEEXT) \
- 	test-trust$(EXEEXT) test-parser$(EXEEXT) test-record$(EXEEXT) \
- 	test-memory-icon$(EXEEXT) test-gnupg-key$(EXEEXT) \
--	test-gnupg-collection$(EXEEXT) test-gnupg-process$(EXEEXT) \
--	test-system-prompt$(EXEEXT)
-+	test-gnupg-collection$(EXEEXT) test-gnupg-process$(EXEEXT)
- @WITH_GTK_TRUE@am__EXEEXT_4 = frob-certificate$(EXEEXT) \
- @WITH_GTK_TRUE@	frob-combo-selector$(EXEEXT) \
- @WITH_GTK_TRUE@	frob-gnupg-selector$(EXEEXT) \
-@@ -882,14 +881,6 @@
- am_test_symkey_OBJECTS = egg/test-symkey.$(OBJEXT)
- test_symkey_OBJECTS = $(am_test_symkey_OBJECTS)
- test_symkey_DEPENDENCIES = $(am__DEPENDENCIES_4)
--am_test_system_prompt_OBJECTS =  \
--	gcr/test_system_prompt-test-system-prompt.$(OBJEXT)
--test_system_prompt_OBJECTS = $(am_test_system_prompt_OBJECTS)
--test_system_prompt_DEPENDENCIES = $(am__DEPENDENCIES_3)
--test_system_prompt_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC \
--	$(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=link $(CCLD) \
--	$(test_system_prompt_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \
--	$(LDFLAGS) -o $@
- am_test_trust_OBJECTS = gcr/test_trust-test-trust.$(OBJEXT)
- test_trust_OBJECTS = $(am_test_trust_OBJECTS)
- test_trust_DEPENDENCIES = $(am__DEPENDENCIES_3)
-@@ -974,8 +965,7 @@
- 	$(test_secret_exchange_SOURCES) $(test_secure_memory_SOURCES) \
- 	$(test_simple_certificate_SOURCES) \
- 	$(test_subject_public_key_SOURCES) $(test_symkey_SOURCES) \
--	$(test_system_prompt_SOURCES) $(test_trust_SOURCES) \
--	$(test_util_SOURCES)
-+	$(test_trust_SOURCES) $(test_util_SOURCES)
- DIST_SOURCES = $(libegg_asn1x_la_SOURCES) $(libegg_hex_la_SOURCES) \
- 	$(libegg_secmem_la_SOURCES) $(libegg_test_la_SOURCES) \
- 	$(libegg_la_SOURCES) $(libgck_@GCK_MAJOR@_la_SOURCES) \
-@@ -1016,8 +1006,7 @@
- 	$(test_secret_exchange_SOURCES) $(test_secure_memory_SOURCES) \
- 	$(test_simple_certificate_SOURCES) \
- 	$(test_subject_public_key_SOURCES) $(test_symkey_SOURCES) \
--	$(test_system_prompt_SOURCES) $(test_trust_SOURCES) \
--	$(test_util_SOURCES)
-+	$(test_trust_SOURCES) $(test_util_SOURCES)
- RECURSIVE_TARGETS = all-recursive check-recursive cscopelist-recursive \
- 	ctags-recursive dvi-recursive html-recursive info-recursive \
- 	install-data-recursive install-dvi-recursive \
-@@ -2117,8 +2106,7 @@
- 	test-memory-icon \
- 	test-gnupg-key \
- 	test-gnupg-collection \
--	test-gnupg-process \
--	test-system-prompt
-+	test-gnupg-process
- 
- test_certificate_SOURCES = gcr/test-certificate.c
- test_certificate_CFLAGS = $(gcr_CFLAGS)
-@@ -2171,9 +2159,6 @@
- test_subject_public_key_SOURCES = gcr/test-subject-public-key.c
- test_subject_public_key_CFLAGS = $(gcr_CFLAGS)
- test_subject_public_key_LDADD = $(gcr_LIBS)
--test_system_prompt_SOURCES = gcr/test-system-prompt.c
--test_system_prompt_CFLAGS = $(gcr_CFLAGS)
--test_system_prompt_LDADD = $(gcr_LIBS)
- test_trust_SOURCES = gcr/test-trust.c
- test_trust_CFLAGS = $(gcr_CFLAGS)
- test_trust_LDADD = $(gcr_LIBS)
-@@ -3283,12 +3268,6 @@
- test-symkey$(EXEEXT): $(test_symkey_OBJECTS) $(test_symkey_DEPENDENCIES) $(EXTRA_test_symkey_DEPENDENCIES) 
- 	@rm -f test-symkey$(EXEEXT)
- 	$(AM_V_CCLD)$(LINK) $(test_symkey_OBJECTS) $(test_symkey_LDADD) $(LIBS)
--gcr/test_system_prompt-test-system-prompt.$(OBJEXT):  \
--	gcr/$(am__dirstamp) gcr/$(DEPDIR)/$(am__dirstamp)
--
--test-system-prompt$(EXEEXT): $(test_system_prompt_OBJECTS) $(test_system_prompt_DEPENDENCIES) $(EXTRA_test_system_prompt_DEPENDENCIES) 
--	@rm -f test-system-prompt$(EXEEXT)
--	$(AM_V_CCLD)$(test_system_prompt_LINK) $(test_system_prompt_OBJECTS) $(test_system_prompt_LDADD) $(LIBS)
- gcr/test_trust-test-trust.$(OBJEXT): gcr/$(am__dirstamp) \
- 	gcr/$(DEPDIR)/$(am__dirstamp)
- 
-@@ -3446,7 +3425,6 @@
- @AMDEP_TRUE@@am__include@ @am__quote@gcr/$(DEPDIR)/test_secure_memory-test-secure-memory.Po@am__quote@
- @AMDEP_TRUE@@am__include@ @am__quote@gcr/$(DEPDIR)/test_simple_certificate-test-simple-certificate.Po@am__quote@
- @AMDEP_TRUE@@am__include@ @am__quote@gcr/$(DEPDIR)/test_subject_public_key-test-subject-public-key.Po@am__quote@
--@AMDEP_TRUE@@am__include@ @am__quote@gcr/$(DEPDIR)/test_system_prompt-test-system-prompt.Po@am__quote@
- @AMDEP_TRUE@@am__include@ @am__quote@gcr/$(DEPDIR)/test_trust-test-trust.Po@am__quote@
- @AMDEP_TRUE@@am__include@ @am__quote@gcr/$(DEPDIR)/test_util-test-util.Po@am__quote@
- @AMDEP_TRUE@@am__include@ @am__quote@ui/$(DEPDIR)/frob_certificate-frob-certificate.Po@am__quote@
-@@ -4968,20 +4946,6 @@
- @AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
- @am__fastdepCC_FALSE@	$(AM_V_CC@am__nodep@)$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(test_subject_public_key_CFLAGS) $(CFLAGS) -c -o gcr/test_subject_public_key-test-subject-public-key.obj `if test -f 'gcr/test-subject-public-key.c'; then $(CYGPATH_W) 'gcr/test-subject-public-key.c'; else $(CYGPATH_W) '$(srcdir)/gcr/test-subject-public-key.c'; fi`
- 
--gcr/test_system_prompt-test-system-prompt.o: gcr/test-system-prompt.c
--@am__fastdepCC_TRUE@	$(AM_V_CC)$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(test_system_prompt_CFLAGS) $(CFLAGS) -MT gcr/test_system_prompt-test-system-prompt.o -MD -MP -MF gcr/$(DEPDIR)/test_system_prompt-test-system-prompt.Tpo -c -o gcr/test_system_prompt-test-system-prompt.o `test -f 'gcr/test-system-prompt.c' || echo '$(srcdir)/'`gcr/test-system-prompt.c
--@am__fastdepCC_TRUE@	$(AM_V_at)$(am__mv) gcr/$(DEPDIR)/test_system_prompt-test-system-prompt.Tpo gcr/$(DEPDIR)/test_system_prompt-test-system-prompt.Po
--@AMDEP_TRUE@@am__fastdepCC_FALSE@	$(AM_V_CC)source='gcr/test-system-prompt.c' object='gcr/test_system_prompt-test-system-prompt.o' libtool=no @AMDEPBACKSLASH@
--@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
--@am__fastdepCC_FALSE@	$(AM_V_CC@am__nodep@)$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(test_system_prompt_CFLAGS) $(CFLAGS) -c -o gcr/test_system_prompt-test-system-prompt.o `test -f 'gcr/test-system-prompt.c' || echo '$(srcdir)/'`gcr/test-system-prompt.c
--
--gcr/test_system_prompt-test-system-prompt.obj: gcr/test-system-prompt.c
--@am__fastdepCC_TRUE@	$(AM_V_CC)$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(test_system_prompt_CFLAGS) $(CFLAGS) -MT gcr/test_system_prompt-test-system-prompt.obj -MD -MP -MF gcr/$(DEPDIR)/test_system_prompt-test-system-prompt.Tpo -c -o gcr/test_system_prompt-test-system-prompt.obj `if test -f 'gcr/test-system-prompt.c'; then $(CYGPATH_W) 'gcr/test-system-prompt.c'; else $(CYGPATH_W) '$(srcdir)/gcr/test-system-prompt.c'; fi`
--@am__fastdepCC_TRUE@	$(AM_V_at)$(am__mv) gcr/$(DEPDIR)/test_system_prompt-test-system-prompt.Tpo gcr/$(DEPDIR)/test_system_prompt-test-system-prompt.Po
--@AMDEP_TRUE@@am__fastdepCC_FALSE@	$(AM_V_CC)source='gcr/test-system-prompt.c' object='gcr/test_system_prompt-test-system-prompt.obj' libtool=no @AMDEPBACKSLASH@
--@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
--@am__fastdepCC_FALSE@	$(AM_V_CC@am__nodep@)$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(test_system_prompt_CFLAGS) $(CFLAGS) -c -o gcr/test_system_prompt-test-system-prompt.obj `if test -f 'gcr/test-system-prompt.c'; then $(CYGPATH_W) 'gcr/test-system-prompt.c'; else $(CYGPATH_W) '$(srcdir)/gcr/test-system-prompt.c'; fi`
--
- gcr/test_trust-test-trust.o: gcr/test-trust.c
- @am__fastdepCC_TRUE@	$(AM_V_CC)$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(test_trust_CFLAGS) $(CFLAGS) -MT gcr/test_trust-test-trust.o -MD -MP -MF gcr/$(DEPDIR)/test_trust-test-trust.Tpo -c -o gcr/test_trust-test-trust.o `test -f 'gcr/test-trust.c' || echo '$(srcdir)/'`gcr/test-trust.c
- @am__fastdepCC_TRUE@	$(AM_V_at)$(am__mv) gcr/$(DEPDIR)/test_trust-test-trust.Tpo gcr/$(DEPDIR)/test_trust-test-trust.Po
-@@ -5808,13 +5772,6 @@
- 	$(am__check_pre) $(LOG_DRIVER) --test-name "$$f" \
- 	--log-file $$b.log --trs-file $$b.trs \
- 	$(am__common_driver_flags) $(AM_LOG_DRIVER_FLAGS) $(LOG_DRIVER_FLAGS) -- $(LOG_COMPILE) \
--	"$$tst" $(AM_TESTS_FD_REDIRECT)
--test-system-prompt.log: test-system-prompt$(EXEEXT)
--	@p='test-system-prompt$(EXEEXT)'; \
--	b='test-system-prompt'; \
--	$(am__check_pre) $(LOG_DRIVER) --test-name "$$f" \
--	--log-file $$b.log --trs-file $$b.trs \
--	$(am__common_driver_flags) $(AM_LOG_DRIVER_FLAGS) $(LOG_DRIVER_FLAGS) -- $(LOG_COMPILE) \
- 	"$$tst" $(AM_TESTS_FD_REDIRECT)
- .test.log:
- 	@p='$<'; \

gnu/packages/patches/gcr-fix-collection-tests-to-work-with-gpg-21.patch

@@ -1,31 +0,0 @@
-This patch comes from Debian.
-
-https://bugzilla.gnome.org/show_bug.cgi?id=771052
-https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=835737
-
---- gcr-3.20.0.old/gcr/test-gnupg-collection.c	2017-06-29 14:26:33.810838197 -0400
-+++ gcr-3.20.0/gcr/test-gnupg-collection.c	2017-06-30 17:25:09.149383067 -0400
-@@ -115,6 +115,14 @@
-
-	g_object_unref (test->collection);
-
-+	/* remove potential gpg 2.1 extras, ignore any errors. */
-+	cmd = g_strdup_printf ("rm -rf %s/*.d", test->directory);
-+	system(cmd);
-+	g_free(cmd);
-+	cmd = g_strdup_printf ("rm -f %s/.gpg-v21-migrated", test->directory);
-+	system(cmd);
-+	g_free(cmd);
-+
-	cmd = g_strdup_printf ("rm -f %s/*", test->directory);
-	g_spawn_check_exit_status (system (cmd), &error);
-	g_assert_no_error (error);
-@@ -202,7 +210,7 @@
-	GcrGnupgKey *key;
-
-	_gcr_gnupg_collection_load_async (test->collection, NULL, on_async_ready, test);
--	egg_test_wait_until (500);
-+	egg_test_wait_until (2500);
-	g_assert (test->result);
-	_gcr_gnupg_collection_load_finish (test->collection, test->result, &error);
-	g_assert_no_error (error);

gnu/packages/patches/gnome-todo-libical-compat.patch

@@ -1,17 +0,0 @@
-Fix compatibility with libical 3.0.
-
-Patch copied from Arch Linux:
-https://git.archlinux.org/svntogit/packages.git/tree/trunk/gnome-todo-3.26.2-libical-3.0.patch?h=packages/gnome-todo
-
-diff -up gnome-todo-3.26.2/src/gtd-task.c.libical-3.0 gnome-todo-3.26.2/src/gtd-task.c
---- gnome-todo-3.26.2/src/gtd-task.c.libical-3.0	2017-11-08 14:53:53.484294926 +0100
-+++ gnome-todo-3.26.2/src/gtd-task.c	2017-11-08 14:53:57.208294874 +0100
-@@ -778,7 +778,7 @@ gtd_task_set_complete (GtdTask  *task,
-           dt->minute = g_date_time_get_minute (now);
-           dt->second = g_date_time_get_seconds (now);
-           dt->is_date = 0;
--          dt->is_utc = 1;
-+          dt->zone = icaltimezone_get_utc_timezone ();
- 
-           /* convert timezone
-            *

gnu/packages/patches/gtk3-fix-deprecation-macro-use.patch

@@ -1,28 +0,0 @@
-Copied from <https://gitlab.gnome.org/GNOME/gtk/commit/e3a1593a>.
-Fixes upstream bugs <https://gitlab.gnome.org/GNOME/gtk/issues/1523>
-and <https://gitlab.gnome.org/GNOME/gtk/issues/1280>.
-
-diff --git a/gdk/x11/gdkwindow-x11.c b/gdk/x11/gdkwindow-x11.c
-index 97ada6d73919fba3dfe192dd66929e90bc7677bb..764e39495f7edb0c3efe41cca25b8bee4778887d 100644
---- a/gdk/x11/gdkwindow-x11.c
-+++ b/gdk/x11/gdkwindow-x11.c
-@@ -2985,6 +2985,7 @@ gdk_window_x11_set_background (GdkWindow      *window,
-   double r, g, b, a;
-   cairo_surface_t *surface;
-   cairo_matrix_t matrix;
-+  cairo_pattern_t *parent_relative_pattern;
- 
-   if (GDK_WINDOW_DESTROYED (window))
-     return;
-@@ -2997,8 +2998,10 @@ gdk_window_x11_set_background (GdkWindow      *window,
-     }
- 
- G_GNUC_BEGIN_IGNORE_DEPRECATIONS
--  if (pattern == gdk_x11_get_parent_relative_pattern ())
-+  parent_relative_pattern = gdk_x11_get_parent_relative_pattern ();
- G_GNUC_END_IGNORE_DEPRECATIONS
-+
-+  if (pattern == parent_relative_pattern)
-     {
-       GdkWindow *parent;
- 

gnu/packages/patches/mrustc-0.8.0-fix-variable-length-integer-receiving.patch

@@ -0,0 +1,15 @@
+https://github.com/thepowersgang/mrustc/issues/109
+From: Danny Milosavljevic <dannym@scratchpost.org>
+Date: Fri, 3 Jan 2019 13:00:00 +0100
+
+--- mrustc/src/expand/proc_macro.cpp.orig	2019-02-01 14:16:54.208486062 +0100
++++ mrustc/src/expand/proc_macro.cpp	2019-02-01 14:17:14.350925705 +0100
+@@ -977,7 +977,7 @@
+     for(;;)
+     {
+         auto b = recv_u8();
+-        v |= static_cast<uint64_t>(b) << ofs;
++        v |= static_cast<uint64_t>(b & 0x7F) << ofs;
+         if( (b & 0x80) == 0 )
+             break;
+         ofs += 7;

gnu/packages/patches/python-robotframework-honor-source-date-epoch.patch

@@ -0,0 +1,62 @@
+From 3cc41c05fad5601c0dd1832f64a6e9efca017727 Mon Sep 17 00:00:00 2001
+From: Maxim Cournoyer <maxim.cournoyer@gmail.com>
+Date: Mon, 1 Apr 2019 11:36:04 -0400
+Subject: [PATCH] robottime: Honor the SOURCE_DATE_EPOCH environment variable.
+
+Honoring the SOURCE_DATE_EPOCH environment variable allows building
+the documentation using libdoc reproducibly, by setting the generated
+timestamp to a fixed value.
+
+For more background on reproducible builds and the SOURCE_DATE_EPOCH
+environment variable, see:
+https://reproducible-builds.org/specs/source-date-epoch/.
+
+* src/robot/utils/robottime.py: import `os'.
+(TimestampCache._get_epoch): Retrieve date from SOURCE_DATE_EPOCH if
+it is defined, otherwise from time.time().
+* utest/output/test_logger.py (TestLogger.test_write_to_one_logger):
+Check for the existance of a timestamp attribute instead of checking
+for its content as the later is easy to break when using the
+SOURCE_DATE_EPOCH environment variable.
+---
+ src/robot/utils/robottime.py | 3 +++
+ utest/output/test_logger.py  | 2 +-
+ 2 files changed, 4 insertions(+), 1 deletion(-)
+
+diff --git a/src/robot/utils/robottime.py b/src/robot/utils/robottime.py
+index 06432a4a6..91526f826 100644
+--- a/src/robot/utils/robottime.py
++++ b/src/robot/utils/robottime.py
+@@ -14,6 +14,7 @@
+ #  limitations under the License.
+ 
+ import datetime
++import os
+ import time
+ import re
+ 
+@@ -395,6 +396,8 @@ class TimestampCache(object):
+ 
+     # Seam for mocking
+     def _get_epoch(self):
++        if os.getenv('SOURCE_DATE_EPOCH'):
++            return float(os.getenv('SOURCE_DATE_EPOCH'))
+         return time.time()
+ 
+     def _use_cache(self, secs, *separators):
+diff --git a/utest/output/test_logger.py b/utest/output/test_logger.py
+index 92fe6d77d..e980227aa 100644
+--- a/utest/output/test_logger.py
++++ b/utest/output/test_logger.py
+@@ -46,7 +46,7 @@ class TestLogger(unittest.TestCase):
+         logger = LoggerMock(('Hello, world!', 'INFO'))
+         self.logger.register_logger(logger)
+         self.logger.write('Hello, world!', 'INFO')
+-        assert_true(logger.msg.timestamp.startswith('20'))
++        assert_true(hasattr(logger.msg, 'timestamp'))
+ 
+     def test_write_to_one_logger_with_trace_level(self):
+         logger = LoggerMock(('expected message', 'TRACE'))
+-- 
+2.20.1
+

gnu/packages/patches/texlive-bin-CVE-2018-17407.patch

@@ -0,0 +1,249 @@
+This patch adds support for newer versions of Poppler and some upstream
+TexLive fixes, including one for CVE-2018-17407.
+
+It is taken from Linux From Scratch:
+<http://www.linuxfromscratch.org/patches/blfs/svn/texlive-20180414-source-upstream_fixes-3.patch>.
+
+Submitted By: Ken Moffat <ken at linuxfromscratch dot org>
+Date: 2018-12-26
+Initial Package Version: 20180414
+Upstream Status: Applied
+Origin: Upstream
+Description: Two fixes, cherry-picked from svn plus a CVE fix.
+I have removed the partial fixes for various system versions of poppler.
+
+r47469 Fix segfault in dvipdfm-x (XeTeX) on 1/2/4-bit transparent indexed PNGs.
+
+r47477 Fix a ptex regression for discontinuous kinsoku table.
+
+Also, via fedora (I got lost in svn) a critical fix for CVE-2018-17407
+
+"A buffer overflow in the handling of Type 1 fonts allows arbitrary code
+execution when a malicious font is loaded by one of the vulnerable tools:
+pdflatex, pdftex, dvips, or luatex."
+
+diff -Naur a/texk/dvipdfm-x/pngimage.c b/texk/dvipdfm-x/pngimage.c
+--- a/texk/dvipdfm-x/pngimage.c	2018-02-17 08:41:35.000000000 +0000
++++ b/texk/dvipdfm-x/pngimage.c	2018-10-09 01:52:01.648670875 +0100
+@@ -964,12 +964,16 @@
+   png_bytep   trans;
+   int         num_trans;
+   png_uint_32 i;
++  png_byte    bpc, mask, shift;
+ 
+   if (!png_get_valid(png_ptr, info_ptr, PNG_INFO_tRNS) ||
+       !png_get_tRNS(png_ptr, info_ptr, &trans, &num_trans, NULL)) {
+     WARN("%s: PNG does not have valid tRNS chunk but tRNS is requested.", PNG_DEBUG_STR);
+     return NULL;
+   }
++  bpc   = png_get_bit_depth(png_ptr, info_ptr);
++  mask  = 0xff >> (8 - bpc);
++  shift = 8 - bpc;
+ 
+   smask = pdf_new_stream(STREAM_COMPRESS);
+   dict  = pdf_stream_dict(smask);
+@@ -981,7 +985,8 @@
+   pdf_add_dict(dict, pdf_new_name("ColorSpace"), pdf_new_name("DeviceGray"));
+   pdf_add_dict(dict, pdf_new_name("BitsPerComponent"), pdf_new_number(8));
+   for (i = 0; i < width*height; i++) {
+-    png_byte idx = image_data_ptr[i];
++    /* data is packed for 1/2/4 bpc formats, msb first */
++    png_byte idx = (image_data_ptr[bpc * i / 8] >> (shift - bpc * i % 8)) & mask;
+     smask_data_ptr[i] = (idx < num_trans) ? trans[idx] : 0xff;
+   }
+   pdf_add_stream(smask, (char *)smask_data_ptr, width*height);
+diff -Naur a/texk/dvipsk/writet1.c b/texk/dvipsk/writet1.c
+--- a/texk/dvipsk/writet1.c	2016-11-25 18:24:26.000000000 +0000
++++ b/texk/dvipsk/writet1.c	2018-10-09 01:52:01.648670875 +0100
+@@ -1449,7 +1449,9 @@
+         *(strend(t1_buf_array) - 1) = ' ';
+ 
+         t1_getline();
++        alloc_array(t1_buf, strlen(t1_line_array) + strlen(t1_buf_array) + 1, T1_BUF_SIZE);
+         strcat(t1_buf_array, t1_line_array);
++        alloc_array(t1_line, strlen(t1_buf_array) + 1, T1_BUF_SIZE);
+         strcpy(t1_line_array, t1_buf_array);
+         t1_line_ptr = eol(t1_line_array);
+     }
+diff -Naur a/texk/web2c/luatexdir/font/writet1.w b/texk/web2c/luatexdir/font/writet1.w
+--- a/texk/web2c/luatexdir/font/writet1.w	2016-11-25 18:24:34.000000000 +0000
++++ b/texk/web2c/luatexdir/font/writet1.w	2018-10-09 01:52:01.648670875 +0100
+@@ -1625,7 +1625,9 @@
+     if (sscanf(p, "%i", &i) != 1) {
+         strcpy(t1_buf_array, t1_line_array);
+         t1_getline();
++        alloc_array(t1_buf, strlen(t1_line_array) + strlen(t1_buf_array) + 1, T1_BUF_SIZE);
+         strcat(t1_buf_array, t1_line_array);
++        alloc_array(t1_line, strlen(t1_buf_array) + 1, T1_BUF_SIZE);
+         strcpy(t1_line_array, t1_buf_array);
+         t1_line_ptr = eol(t1_line_array);
+     }
+diff -Naur a/texk/web2c/luatexdir/image/pdftoepdf.w b/texk/web2c/luatexdir/image/pdftoepdf.w
+--- a/texk/web2c/luatexdir/image/pdftoepdf.w	2018-01-17 18:00:12.000000000 +0000
++++ b/texk/web2c/luatexdir/image/pdftoepdf.w	2018-10-09 01:52:01.648670875 +0100
+@@ -472,10 +472,10 @@
+         break;
+     */
+     case objString:
+-        copyString(pdf, obj->getString());
++        copyString(pdf, (GooString *)obj->getString());
+         break;
+     case objName:
+-        copyName(pdf, obj->getName());
++        copyName(pdf, (char *)obj->getName());
+         break;
+     case objNull:
+         pdf_add_null(pdf);
+diff -Naur a/texk/web2c/luatexdir/lua/lepdflib.cc b/texk/web2c/luatexdir/lua/lepdflib.cc
+--- a/texk/web2c/luatexdir/lua/lepdflib.cc	2018-02-14 14:44:38.000000000 +0000
++++ b/texk/web2c/luatexdir/lua/lepdflib.cc	2018-10-09 01:52:01.649670868 +0100
+@@ -674,7 +674,7 @@
+     uin = (udstruct *) luaL_checkudata(L, 1, M_##in);          \
+     if (uin->pd != NULL && uin->pd->pc != uin->pc)             \
+         pdfdoc_changed_error(L);                               \
+-    gs = ((in *) uin->d)->function();                          \
++    gs = (GooString *)((in *) uin->d)->function();             \
+     if (gs != NULL)                                            \
+         lua_pushlstring(L, gs->getCString(), gs->getLength()); \
+     else                                                       \
+@@ -1813,7 +1813,7 @@
+     if (uin->pd != NULL && uin->pd->pc != uin->pc)
+         pdfdoc_changed_error(L);
+     if (((Object *) uin->d)->isString()) {
+-        gs = ((Object *) uin->d)->getString();
++        gs = (GooString *)((Object *) uin->d)->getString();
+         lua_pushlstring(L, gs->getCString(), gs->getLength());
+     } else
+         lua_pushnil(L);
+diff -Naur a/texk/web2c/pdftexdir/writet1.c b/texk/web2c/pdftexdir/writet1.c
+--- a/texk/web2c/pdftexdir/writet1.c	2016-11-25 18:24:37.000000000 +0000
++++ b/texk/web2c/pdftexdir/writet1.c	2018-10-09 01:52:01.649670868 +0100
+@@ -1598,7 +1598,9 @@
+         *(strend(t1_buf_array) - 1) = ' ';
+ 
+         t1_getline();
++        alloc_array(t1_buf, strlen(t1_line_array) + strlen(t1_buf_array) + 1, T1_BUF_SIZE);
+         strcat(t1_buf_array, t1_line_array);
++        alloc_array(t1_line, strlen(t1_buf_array) + 1, T1_BUF_SIZE);
+         strcpy(t1_line_array, t1_buf_array);
+         t1_line_ptr = eol(t1_line_array);
+     }
+diff -Naur a/texk/web2c/ptexdir/ptex_version.h b/texk/web2c/ptexdir/ptex_version.h
+--- a/texk/web2c/ptexdir/ptex_version.h	2018-01-21 03:48:06.000000000 +0000
++++ b/texk/web2c/ptexdir/ptex_version.h	2018-10-09 01:52:01.649670868 +0100
+@@ -1 +1 @@
+-#define PTEX_VERSION "p3.8.0"
++#define PTEX_VERSION "p3.8.1"
+diff -Naur a/texk/web2c/ptexdir/tests/free_ixsp.tex b/texk/web2c/ptexdir/tests/free_ixsp.tex
+--- a/texk/web2c/ptexdir/tests/free_ixsp.tex	1970-01-01 01:00:00.000000000 +0100
++++ b/texk/web2c/ptexdir/tests/free_ixsp.tex	2018-10-09 01:52:01.649670868 +0100
+@@ -0,0 +1,53 @@
++%#!eptex -ini -etex
++\let\dump\relax
++\batchmode
++\input plain
++
++\errorstopmode
++\catcode`@=11
++\newcount\@tempcnta
++\newcount\@tempcntb
++\newcount\@tempcntc
++\mathchardef\LIM=256
++
++\def\MYCHAR#1{%
++  \@tempcntc=\numexpr7*#1+"101\relax
++  \@tempcnta=\@tempcntc\divide\@tempcnta 94
++  \@tempcntb=\numexpr\@tempcntc-94*\@tempcnta+1\relax
++  \ifnum\@tempcntb<0\advance\@tempcntb94 \advance\@tempcnta-1\fi
++  \advance\@tempcnta18 % 18区以降
++  \CNTA=\kuten\numexpr"100*\@tempcnta+\@tempcntb\relax
++}
++
++\newcount\CNT\newcount\CNTA
++\CNT=0
++\loop
++  \MYCHAR\CNT
++  \message{\the\CNT.}
++  \inhibitxspcode\CNTA=1\relax
++  \advance\CNT1\relax
++  \ifnum\CNT<\LIM
++\repeat
++
++\newcount\CNTB
++
++\loop
++  \MYCHAR\CNTB
++  \global\inhibitxspcode\CNTA=3
++{%
++\CNT=0
++\loop
++  \MYCHAR\CNT
++  \count@=\numexpr 1-\inhibitxspcode\CNTA\relax
++  \ifnum\count@=0\else\ifnum\CNTB=\CNT\else
++    \errmessage{<\the\CNTB, \the\CNT, \the\inhibitxspcode\CNTA>}\fi\fi
++  \advance\CNT1\relax
++  \ifnum\CNT<\LIM
++\repeat
++}
++  \MYCHAR\CNTB
++  \global\inhibitxspcode\CNTA=1\relax
++  \advance\CNTB1\relax
++  \ifnum\CNTB<\LIM
++\repeat
++\bye
+diff -Naur a/texk/web2c/ptexdir/tests/free_pena.tex b/texk/web2c/ptexdir/tests/free_pena.tex
+--- a/texk/web2c/ptexdir/tests/free_pena.tex	1970-01-01 01:00:00.000000000 +0100
++++ b/texk/web2c/ptexdir/tests/free_pena.tex	2018-10-09 01:52:01.649670868 +0100
+@@ -0,0 +1,52 @@
++%#!eptex -ini -etex
++\let\dump\relax
++\batchmode
++\input plain
++
++\errorstopmode
++\catcode`@=11
++\newcount\@tempcnta
++\newcount\@tempcntb
++\newcount\@tempcntc
++\mathchardef\LIM=256
++
++\def\MYCHAR#1{%
++  \@tempcntc=\numexpr7*#1+"101\relax
++  \@tempcnta=\@tempcntc\divide\@tempcnta 94
++  \@tempcntb=\numexpr\@tempcntc-94*\@tempcnta+1\relax
++  \ifnum\@tempcntb<0\advance\@tempcntb94 \advance\@tempcnta-1\fi
++  \advance\@tempcnta18 % 18区以降
++  \CNTA=\kuten\numexpr"100*\@tempcnta+\@tempcntb\relax
++}
++
++\newcount\CNT\newcount\CNTA
++\CNT=0
++\loop
++  \MYCHAR\CNT
++  \message{\the\CNT.}
++  \prebreakpenalty\CNTA=\numexpr\CNT+1\relax
++  \advance\CNT1\relax
++  \ifnum\CNT<\LIM
++\repeat
++
++\newcount\CNTB
++
++\loop
++  \MYCHAR\CNTB
++  \global\prebreakpenalty\CNTA=0
++{%
++\CNT=0
++\loop
++  \MYCHAR\CNT
++  \count@=\numexpr -\CNT-1+\prebreakpenalty\CNTA\relax
++  \ifnum\count@=0\else\ifnum\CNTB=\CNT\else\errmessage{<\the\CNTB, \the\CNT>}\fi\fi
++  \advance\CNT1\relax
++  \ifnum\CNT<\LIM
++\repeat
++}
++  \MYCHAR\CNTB
++  \global\prebreakpenalty\CNTA=\numexpr\CNTB+1\relax
++  \advance\CNTB1\relax
++  \ifnum\CNTB<\LIM
++\repeat
++\bye

gnu/packages/patches/texlive-bin-pdftex-poppler-compat.patch

@@ -1,188 +0,0 @@
-Fix compatibility with Poppler 0.72.
-
-These files are taken from the upstream "poppler0.72.0.cc" variants and
-diffed against the "newpoppler" files from the 20180414 distribution.
-
-See revision 49336:
-https://tug.org/svn/texlive/trunk/Build/source/texk/web2c/pdftexdir/
-
---- a/texk/web2c/pdftexdir/pdftoepdf-newpoppler.cc	1970-01-01 01:00:00.000000000 +0100
-+++ b/texk/web2c/pdftexdir/pdftoepdf-newpoppler.cc	2018-12-09 21:14:58.479732695 +0100
-@@ -22,7 +22,7 @@
- https://git.archlinux.org/svntogit/packages.git/plain/texlive-bin/trunk
- by Arch Linux. A little modifications are made to avoid a crash for
- some kind of pdf images, such as figure_missing.pdf in gnuplot.
--The poppler should be 0.59.0 or newer versions.
-+The poppler should be 0.72.0 or newer versions.
- POPPLER_VERSION should be defined.
- */
- 
-@@ -120,7 +120,7 @@
- 
- static InObj *inObjList;
- static UsedEncoding *encodingList;
--static GBool isInit = gFalse;
-+static bool isInit = false;
- 
- // --------------------------------------------------------------------
- // Maintain list of open embedded PDF files
-@@ -317,7 +317,7 @@
-     pdf_puts("<<\n");
-     assert(r->type == objFont); // FontDescriptor is in fd_tree
-     for (i = 0, l = obj->dictGetLength(); i < l; ++i) {
--        key = obj->dictGetKey(i);
-+        key = (char *)obj->dictGetKey(i);
-         if (strncmp("FontDescriptor", key, strlen("FontDescriptor")) == 0
-             || strncmp("BaseFont", key, strlen("BaseFont")) == 0
-             || strncmp("Encoding", key, strlen("Encoding")) == 0)
-@@ -427,7 +427,7 @@
-         charset = fontdesc.dictLookup("CharSet");
-         if (!charset.isNull() &&
-             charset.isString() && is_subsetable(fontmap))
--            epdf_mark_glyphs(fd, (char *)charset.getString()->getCString());
-+            epdf_mark_glyphs(fd, (char *)charset.getString()->c_str());
-         else
-             embed_whole_font(fd);
-         addFontDesc(fontdescRef.getRef(), fd);
-@@ -454,7 +454,7 @@
-     for (i = 0, l = obj->dictGetLength(); i < l; ++i) {
-         fontRef = obj->dictGetValNF(i);
-         if (fontRef.isRef())
--            copyFont(obj->dictGetKey(i), &fontRef);
-+            copyFont((char *)obj->dictGetKey(i), &fontRef);
-         else if (fontRef.isDict()) {   // some programs generate pdf with embedded font object
-             copyName((char *)obj->dictGetKey(i));
-             pdf_puts(" ");
-@@ -566,7 +566,7 @@
-         pdf_printf("%s", convertNumToPDF(obj->getNum()));
-     } else if (obj->isString()) {
-         s = (GooString *)obj->getString();
--        p = s->getCString();
-+        p = (char *)s->c_str();
-         l = s->getLength();
-         if (strlen(p) == (unsigned int) l) {
-             pdf_puts("(");
-@@ -664,7 +664,7 @@
-                     ("PDF inclusion: CID fonts are not supported"
-                      " (try to disable font replacement to fix this)");
-             }
--            if ((s = ((Gfx8BitFont *) r->font)->getCharName(i)) != 0)
-+            if ((s = (char *)((Gfx8BitFont *) r->font)->getCharName(i)) != 0)
-                 glyphNames[i] = s;
-             else
-                 glyphNames[i] = notdef;
-@@ -683,7 +683,7 @@
- }
- 
- // get the pagebox according to the pagebox_spec
--static PDFRectangle *get_pagebox(Page * page, int pagebox_spec)
-+static const PDFRectangle *get_pagebox(Page * page, int pagebox_spec)
- {
-     if (pagebox_spec == pdfboxspecmedia)
-         return page->getMediaBox();
-@@ -715,7 +715,7 @@
- {
-     PdfDocument *pdf_doc;
-     Page *page;
--    PDFRectangle *pagebox;
-+    const PDFRectangle *pagebox;
- #ifdef POPPLER_VERSION
-     int pdf_major_version_found, pdf_minor_version_found;
- #else
-@@ -724,8 +724,8 @@
-     // initialize
-     if (!isInit) {
-         globalParams = new GlobalParams();
--        globalParams->setErrQuiet(gFalse);
--        isInit = gTrue;
-+        globalParams->setErrQuiet(false);
-+        isInit = true;
-     }
-     // open PDF file
-     pdf_doc = find_add_document(image_name);
-@@ -849,7 +849,7 @@
-     pageObj = xref->fetch(pageRef->num, pageRef->gen);
-     pageDict = pageObj.getDict();
-     rotate = page->getRotate();
--    PDFRectangle *pagebox;
-+    const PDFRectangle *pagebox;
-     // write the Page header
-     pdf_puts("/Type /XObject\n");
-     pdf_puts("/Subtype /Form\n");
-@@ -977,7 +977,7 @@
-             }
-             l = dic1.getLength();
-             for (i = 0; i < l; i++) {
--                groupDict.dictAdd(copyString(dic1.getKey(i)),
-+                groupDict.dictAdd((const char *)copyString(dic1.getKey(i)),
-                                   dic1.getValNF(i));
-             }
- // end modification
-@@ -1001,14 +1001,14 @@
-         pdf_puts("/Resources <<\n");
-         for (i = 0, l = obj1->dictGetLength(); i < l; ++i) {
-             obj2 = obj1->dictGetVal(i);
--            key = obj1->dictGetKey(i);
-+            key = (char *)obj1->dictGetKey(i);
-             if (strcmp("Font", key) == 0)
-                 copyFontResources(&obj2);
-             else if (strcmp("ProcSet", key) == 0)
-                 copyProcSet(&obj2);
-             else
--                copyOtherResources(&obj2, key);
-+                copyOtherResources(&obj2, (char *)key);
-         }
-         pdf_puts(">>\n");
-     }
-
---- a/texk/web2c/pdftexdir/pdftosrc-newpoppler.cc	1970-01-01 01:00:00.000000000 +0100
-+++ b/texk/web2c/pdftexdir/pdftosrc-newpoppler.cc	2018-12-09 21:14:58.479732695 +0100
-@@ -20,7 +20,7 @@
- /*
- This is based on the patch texlive-poppler-0.59.patch <2017-09-19> at
- https://git.archlinux.org/svntogit/packages.git/plain/texlive-bin/trunk
--by Arch Linux. The poppler should be 0.59.0 or newer versions.
-+by Arch Linux. The poppler should be 0.72.0 or newer versions.
- POPPLER_VERSION should be defined.
- */
- 
-@@ -109,7 +109,7 @@
-             fprintf(stderr, "No SourceName found\n");
-             exit(1);
-         }
--        outname = (char *)srcName.getString()->getCString();
-+        outname = (char *)srcName.getString()->c_str();
-         // We cannot free srcName, as objname shares its string.
-         // srcName.free();
-     } else if (objnum > 0) {
-@@ -118,7 +118,7 @@
-             fprintf(stderr, "Not a Stream object\n");
-             exit(1);
-         }
--        sprintf(buf, "%s", fileName->getCString());
-+        sprintf(buf, "%s", fileName->c_str());
-         if ((p = strrchr(buf, '.')) == 0)
-             p = strchr(buf, 0);
-         if (objgen == 0)
-@@ -128,7 +128,7 @@
-         outname = buf;
-     } else {                    // objnum < 0 means we are extracting the XRef table
-         extract_xref_table = true;
--        sprintf(buf, "%s", fileName->getCString());
-+        sprintf(buf, "%s", fileName->c_str());
-         if ((p = strrchr(buf, '.')) == 0)
-             p = strchr(buf, 0);
-         sprintf(p, ".xref");
-@@ -173,9 +173,9 @@
- 
-                 // parse the header: object numbers and offsets
-                 objStr.streamReset();
--                str = new EmbedStream(objStr.getStream(), Object(objNull), gTrue, first);
-+                str = new EmbedStream(objStr.getStream(), Object(objNull), true, first);
-                 lexer = new Lexer(xref, str);
--                parser = new Parser(xref, lexer, gFalse);
-+                parser = new Parser(xref, lexer, false);
-                 for (n = 0; n < nObjects; ++n) {
-                     obj1 = parser->getObj();
-                     obj2 = parser->getObj();
-

gnu/packages/patches/texlive-bin-xetex-poppler-compat.patch

@@ -1,31 +0,0 @@
-Fix compatibility with Poppler 0.72.
-
-Patch taken from upstream:
-https://tug.org/svn/texlive/trunk/Build/source/texk/web2c/xetexdir/pdfimage.cpp?r1=44964&r2=48969&diff_format=u
-
---- a/texk/web2c/xetexdir/pdfimage.cpp	2017/08/06 07:12:02	44964
-+++ b/texk/web2c/xetexdir/pdfimage.cpp	2018/10/22 04:01:42	48969
-@@ -82,19 +82,19 @@
- 	switch (pdf_box) {
- 		default:
- 		case pdfbox_crop:
--			r = page->getCropBox();
-+			r = (PDFRectangle *)page->getCropBox();
- 			break;
- 		case pdfbox_media:
--			r = page->getMediaBox();
-+			r = (PDFRectangle *)page->getMediaBox();
- 			break;
- 		case pdfbox_bleed:
--			r = page->getBleedBox();
-+			r = (PDFRectangle *)page->getBleedBox();
- 			break;
- 		case pdfbox_trim:
--			r = page->getTrimBox();
-+			r = (PDFRectangle *)page->getTrimBox();
- 			break;
- 		case pdfbox_art:
--			r = page->getArtBox();
-+			r = (PDFRectangle *)page->getArtBox();
- 			break;
- 	}

gnu/packages/patches/totem-meson-compat.patch

@@ -0,0 +1,14 @@
+Fix an error that occurs with Meson 0.50.0 and later:
+"ERROR: Subdir keyword must not be an absolute path".
+
+--- a/src/meson.build	2019-03-15 00:10:26.882293850 +0100
++++ b/src/meson.build	2019-03-15 00:10:54.312197229 +0100
+@@ -82,7 +82,7 @@
+ 
+ install_headers(
+   headers,
+-  subdir: join_paths(totem_includedir, totem_api_path)
++  install_dir: join_paths(totem_includedir, totem_api_path)
+ )
+ 
+ libtotem_player_sources = files(

gnu/packages/patches/valgrind-glibc-compat.patch

@@ -1,18 +0,0 @@
-Fix build failure with glibc 2.26.
-
-Patch copied from upstream source repository:
-https://sourceware.org/git/?p=valgrind.git;a=commit;h=2b5eab6a8db1b0487a3ad7fc4e7eeda6d3513626
-
-diff --git a/memcheck/tests/linux/stack_changes.c b/memcheck/tests/linux/stack_changes.c
-index a978fc2..7f97b90 100644
---- a/memcheck/tests/linux/stack_changes.c
-+++ b/memcheck/tests/linux/stack_changes.c
-@@ -10,7 +10,7 @@
- // This test is checking the libc context calls (setcontext, etc.) and
- // checks that Valgrind notices their stack changes properly.
- 
--typedef  struct ucontext  mycontext;
-+typedef  ucontext_t  mycontext;
- 
- mycontext ctx1, ctx2, oldc;
- int count;

gnu/packages/pciutils.scm

@@ -31,7 +31,7 @@
 (define-public pciutils
   (package
     (name "pciutils")
-    (version "3.6.1")
+    (version "3.6.2")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -39,7 +39,7 @@
                     version ".tar.xz"))
               (sha256
                (base32
-                "1q39hh8scgvqppk1clzjh7yiq5p2r0knv52g3qzmdhsir4f47h7w"))))
+                "1wwkpglvvr1sdj2gxz9khq507y02c4px48njy25divzdhv4jwifv"))))
     (build-system gnu-build-system)
     (arguments
      '(#:phases

gnu/packages/pdf.scm

@@ -663,14 +663,14 @@ line tools for batch rendering @command{pdfdraw}, rewriting files
 (define-public qpdf
   (package
    (name "qpdf")
-   (version "8.2.1")
+   (version "8.4.0")
    (source (origin
             (method url-fetch)
             (uri (string-append "mirror://sourceforge/qpdf/qpdf/" version
                                 "/qpdf-" version ".tar.gz"))
             (sha256
              (base32
-              "1jdb0jj72fjdp6xip4m7yz31r5x13zs7h4smnxsycgw3vbmx6igl"))
+              "1864p952m8vzxk6v500a42psbqj2g2gyli3d3zj6h33hzwxqy09r"))
             (modules '((guix build utils)))
             (snippet
              ;; Replace shebang with the bi-lingual shell/Perl trick to remove

gnu/packages/python-web.scm

@@ -1280,15 +1280,19 @@ WebSocket usage in Python programs.")
 (define-public python-requests
   (package
     (name "python-requests")
-    (version "2.13.0")
+    (version "2.21.0")
     (source (origin
              (method url-fetch)
              (uri (pypi-uri "requests" version))
              (sha256
               (base32
-               "1s0wg4any4dsv5l3hqjxqk2zgb7pdbqhy9rhc8kh3aigfq4ws8jp"))))
+               "13jr0wkj9c2j8c0c8iaal9iivi0bpxghnsdn6lxcpnmc657q4ajh"))))
-    ;; TODO: unbundle urllib3 and chardet.
     (build-system python-build-system)
+    (propagated-inputs
+     `(("python-certifi" ,python-certifi)
+       ("python-chardet" ,python-chardet)
+       ("python-idna" ,python-idna)
+       ("python-urllib3" ,python-urllib3)))
     (arguments
      ;; FIXME: Some tests require network access.
      '(#:tests? #f))
@@ -1457,11 +1461,6 @@ authenticated session objects providing things like keep-alive.")
           "08lwd9f3hqznyf32vnzwvp87pchx062nkbgyrf67rwlkgj0jk5fy"))))
     (build-system python-build-system)
     (arguments `(#:tests? #f))
-    (native-inputs
-     `(;; some packages for tests
-       ("python-mock" ,python-mock)
-       ("python-pytest" ,python-pytest)
-       ("python-tornado" ,python-tornado)))
     (propagated-inputs
      `(;; These 5 inputs are used to build urrlib3[secure]
        ("python-certifi" ,python-certifi)

gnu/packages/python-xyz.scm

@@ -2671,6 +2671,292 @@ and several other projects.")
 (define-public python2-guzzle-sphinx-theme
   (package-with-python2 python-guzzle-sphinx-theme))
 
+(define-public python-bumpversion
+  (package
+    (name "python-bumpversion")
+    (version "0.5.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "bumpversion" version))
+       (sha256
+        (base32
+         "0zn7694yfipxg35ikkfh7kvgl2fissha3dnqad2c5bvsvmrwhi37"))))
+    (build-system python-build-system)
+    (home-page "https://github.com/peritus/bumpversion")
+    (synopsis "Tool to bump software version")
+    (description "This tool provides a command-line interface (CLI) to bump a
+software version simply.")
+    (license license:expat)))
+
+(define-public python-deprecated
+  (package
+    (name "python-deprecated")
+    (version "1.2.5")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/tantale/deprecated.git")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "14909glxxwwc4b9qpz2b9jdriwzi5n65ichw85xqppap5f79wcwz"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases (modify-phases %standard-phases
+                  (replace 'check
+                    (lambda _
+                      (invoke "pytest"))))))
+    (propagated-inputs
+     `(("python-wrapt" ,python-wrapt)))
+    (native-inputs
+     `(("python-bumpversion" ,python-bumpversion)
+       ("python-pytest" ,python-pytest)
+       ("python-pytest-cov" ,python-pytest-cov)
+       ("python-sphinx" ,python-sphinx)
+       ("python-tox" ,python-tox)))
+    (home-page "https://github.com/tantale/deprecated")
+    (synopsis "Python decorator to deprecate classes, functions or methods")
+    (description "The @code{deprecated} decorator provides a convenient way to deprecate
+to deprecate classes, functions or methods.")
+    (license license:expat)))
+
+(define-public python-pygithub
+  (package
+    (name "python-pygithub")
+    (version "1.43.7")
+    (source
+     ;; We fetch from the Git repo because there are no tests in the PyPI
+     ;; archive.
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/PyGithub/PyGithub.git")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "0ww92zz0ja9w6rw83vphmn8rwmcn6abg16j4q7zxjc0rrg2cfj9i"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases (modify-phases %standard-phases
+                  ;; Some tests rely on the network.
+                  (add-after 'unpack 'disable-failing-tests
+                    (lambda _
+                      (substitute* "tests/Issue142.py"
+                        (("testDecodeJson") "disabled_testDecodeJson"))
+                      #t))
+                  (add-before 'check 'prepare-for-tests
+                    (lambda _
+                      (for-each (lambda (f)
+                                  (chmod f #o666))
+                                (find-files "./tests"))
+                      (system* "python" "-m" "lib2to3" "-w" "-n" "tests")
+                      (setenv "PYTHONPATH"
+                              (string-append "./tests:" (getenv "PYTHONPATH")))
+                      #t)))))
+    (propagated-inputs
+     `(("python-deprecated" ,python-deprecated)
+       ("python-pyjwt" ,python-pyjwt)
+       ("python-requests" ,python-requests)))
+    (native-inputs `(("python-httpretty" ,python-httpretty)))
+    (home-page "https://pygithub.readthedocs.io/en/latest/")
+    (synopsis "Python library for the GitHub API")
+    (description "This library allows managing GitHub resources such as
+repositories, user profiles, and organizations in your Python applications,
+using version 3 of the GitHub application programming interface (API).")
+    (license license:lgpl3+)))
+
+(define-public python-rellu
+  (package
+    (name "python-rellu")
+    (version "0.7")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "rellu" version))
+       (sha256
+        (base32
+         "1w0arpj1sm7vh29nrbnca4pnp8sx42l07r17inwqcjjf9bhng66x"))))
+    (build-system python-build-system)
+    (propagated-inputs
+     `(("python-invoke" ,python-invoke)
+       ("python-pygithub" ,python-pygithub)))
+    (home-page "https://github.com/robotframework/rellu")
+    (synopsis "Utilities to create PyPI releases")
+    (description "This collection of utilities contains tooling and templates
+to assist in creating releases on GitHub and publishing them on PyPI.  It is
+designed to be used by Robot Framework and tools and libraries in its
+ecosystem, but can naturally be used also by other projects.")
+    (license license:asl2.0)))
+
+(define-public python-robotframework
+  (package
+    (name "python-robotframework")
+    (version "3.1.1")
+    ;; There are no tests in the PyPI archive.
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/robotframework/robotframework.git")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "1aaiamc9l35m5sf7xl2qc5q9308v7sz3p1qgzcslsjxzddphyn4v"))
+       (patches (search-patches
+                 "python-robotframework-honor-source-date-epoch.patch"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases (modify-phases %standard-phases
+                  (add-before 'build 'build-and-install-doc
+                    (lambda* (#:key outputs #:allow-other-keys)
+                      (let* ((doc-output (assoc-ref outputs "doc"))
+                             (doc (string-append doc-output "/share/"
+                                                 ,name "-" ,version "/")))
+                        (invoke "invoke" "library-docs" "all")
+                        (mkdir-p doc)
+                        (copy-recursively "doc/libraries"
+                                          (string-append doc "/libraries"))
+                        #t)))
+                  (replace 'check
+                    (lambda _
+                      (invoke "python" "utest/run.py"))))))
+    (native-inputs
+     `(("python-invoke" ,python-invoke)
+       ("python-rellu" ,python-rellu)
+       ("python:tk" ,python "tk")))     ;used when building the HTML doc
+    (outputs '("out" "doc"))
+    (home-page "https://robotframework.org")
+    (synopsis "Generic automation framework")
+    (description "Robot Framework is a generic automation framework for
+acceptance testing, acceptance test driven development (ATDD), and robotic
+process automation (RPA).")
+    (license license:asl2.0)))
+
+(define-public python-robotframework-lint
+  ;; There is no properly tagged release; the commit below seems to correspond
+  ;; to the 0.9 stable release available from PyPI.  The tests are not
+  ;; included in the PyPI archive, so we fetch the sources from the upstream
+  ;; Git repo.
+  (let ((commit "e851879bab1f63e4e53b34a4dc8a67ed95102830")
+        (revision "1"))
+    (package
+      (name "python-robotframework-lint")
+      (version (git-version "0.9.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/boakley/robotframework-lint.git")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "1p6fknqg5sb9qz5857ji4a877657vgfjm5v3zn45994parx6ml1m"))))
+      (build-system python-build-system)
+      (arguments
+       `(#:phases
+         (modify-phases %standard-phases
+           (replace 'check
+             (lambda _
+               (invoke "python" "-m" "robot" "-A"
+                       "tests/conf/default.args" "tests"))))))
+      (propagated-inputs
+       `(("python-robotframework" ,python-robotframework)))
+      (home-page "https://github.com/boakley/robotframework-lint/")
+      (synopsis "Static analysis tool (linter) for Robot Framework")
+      (description "This package provides the @code{rflint} command-line
+utility, a static analysis tool (linter) for Robot Framework source files.")
+      (license license:asl2.0))))
+
+(define-public python-robotframework-sshlibrary
+  (package
+    (name "python-robotframework-sshlibrary")
+    (version "3.3.0")
+    ;; There are no tests in the PyPI archive.
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/robotframework/SSHLibrary.git")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "1mk6dz2jqqndbx4yji09012q6rmadnqdywi7czvj62b0s07dr3r2"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'build 'build-and-install-doc
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((doc-output (assoc-ref outputs "doc"))
+                    (doc (string-append doc-output "/share/"
+                                        ,name "-" ,version "/")))
+               (invoke "chmod" "-R" "+w" "docs")
+               (invoke "invoke" "kw-docs" "project-docs")
+               (mkdir-p doc)
+               (for-each delete-file (find-files "docs" "\\.rst"))
+               (copy-recursively "docs" doc)
+               #t)))
+         (replace 'check
+           (lambda _
+             ;; Some tests require an SSH server; we remove them.
+             (delete-file "utest/test_client_api.py")
+             (delete-file "utest/test_scp.py")
+             (invoke "python" "utest/run.py"))))))
+    (propagated-inputs
+     `(("python-robotframework" ,python-robotframework)
+       ("python-paramiko" ,python-paramiko)
+       ("python-scp" ,python-scp)))
+    (native-inputs
+     `(("openssh" ,openssh)
+       ("which" ,which)
+       ;; To generate the documentation
+       ("python-docutils" ,python-docutils)
+       ("python-invoke" ,python-invoke)
+       ("python-pygments" ,python-pygments)
+       ("python-rellu" ,python-rellu)))
+    (outputs '("out" "doc"))
+    (home-page "https://github.com/robotframework/SSHLibrary")
+    (synopsis "Robot Framework library for SSH and SFTP")
+    (description "SSHLibrary is a Robot Framework library providing support
+for SSH and SFTP.  It has the following main usages:
+@itemize @bullet
+@item Executing commands on the remote machine, either blocking or non-blocking.
+@item Writing and reading in an interactive shell.
+@item Transferring files and directories over SFTP.
+@item Ensuring that files and directories exist on the remote machine.
+@end itemize")
+    (license license:asl2.0)))
+
+(define-public python-scp
+  (package
+    (name "python-scp")
+    (version "0.13.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "scp" version))
+       (sha256
+        (base32
+         "1crlpw9lnn58fs1c1rmh7s7s9y5gkgpgjsqlvg9qa51kq1knx7gg"))))
+    (build-system python-build-system)
+    (arguments
+     '(#:tests? #f))                     ;tests require an SSH server
+    (propagated-inputs
+     `(("python-paramiko" ,python-paramiko)))
+    (home-page "https://github.com/jbardin/scp.py")
+    (synopsis "SCP protocol module for Python and Paramiko")
+    (description "The scp module extends the Paramiko library to send and
+receive files via the SCP1 protocol, as implemented by the OpenSSH
+@command{scp} program.")
+    (license license:gpl2+)))
+
 (define-public python-rst.linker
   (package
     (name "python-rst.linker")
@@ -2977,14 +3263,14 @@ and is very extensible.")
 (define-public python-cython
   (package
     (name "python-cython")
-    (version "0.29.5")
+    (version "0.29.6")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "Cython" version))
        (sha256
         (base32
-         "1wfb68g115gmf3mv23w0hh972b0ll85gpb92ci28x6h997br0llx"))))
+         "1bp7cn0pp5qy63k9hbp4ka34fm01kvysh478phpkhr68npqk6pbc"))))
     (build-system python-build-system)
     ;; we need the full python package and not just the python-wrapper
     ;; because we need libpython3.3m.so
@@ -3016,9 +3302,6 @@ and is very extensible.")
 
          (replace 'check
            (lambda _
-             ;; The "with_outer_raising" test fails with Python 3.7.  See
-             ;; https://github.com/cython/cython/issues/2454
-             (delete-file "tests/run/generators_py.py")
              (invoke "python" "runtests.py" "-vv"))))))
     (home-page "http://cython.org/")
     (synopsis "C extensions for Python")
@@ -3422,13 +3705,13 @@ library, libgit2 implements Git plumbing.")
 (define-public python-pyparsing
   (package
     (name "python-pyparsing")
-    (version "2.2.1")
+    (version "2.3.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "pyparsing" version))
        (sha256
-        (base32 "06dgd0iilvf8m0ssmfpcbh8l6jf0zkp8adbb84llksg17crfx4zl"))))
+        (base32 "0yk6xl885b91dmlhlsap7x78hk2rdr879fln9anbq6k4ca42djb6"))))
     (build-system python-build-system)
     (outputs '("out" "doc"))
     (arguments

gnu/packages/rust.scm

@@ -144,7 +144,9 @@ Specific to rust versions before 1.32."
                 (file-name (git-file-name name version))
                 (sha256
                  (base32
-                  "0a7v8ccyzp1sdkwni8h1698hxpfz2sxhcpx42n6l2pbm0rbjp08i"))))
+                  "0a7v8ccyzp1sdkwni8h1698hxpfz2sxhcpx42n6l2pbm0rbjp08i"))
+                (patches
+                 (search-patches "mrustc-0.8.0-fix-variable-length-integer-receiving.patch"))))
       (outputs '("out" "cargo"))
       (build-system gnu-build-system)
       (inputs

gnu/packages/sdl.scm

@@ -79,14 +79,19 @@
                            ;; finding the libGL from mesa at runtime.
                            "LDFLAGS=-lGL")
 
+       #:make-flags '("V=1")            ;build verbosely
+
        #:tests? #f)) ; no check target
     (propagated-inputs
      ;; SDL headers include X11 headers.
      `(("libx11" ,libx11)
-       ("libcap" ,libcap))) ; 'libSDL.la' contain `-lcap'.
+       ("libcap" ,libcap) ; 'libSDL.la' contain `-lcap'.
+       ;; TODO: Since building Mesa with Meson it is now necessary that Mesa is
+       ;; a propogated input. We still need to figure out why, possibly due to a
+       ;; change in pkg-config.
+       ("mesa" ,mesa)))
     (native-inputs `(("pkg-config" ,pkg-config)))
     (inputs `(("libxrandr" ,libxrandr)
-              ("mesa" ,mesa)
               ("glu" ,glu)
               ("alsa-lib" ,alsa-lib)
               ("pulseaudio" ,pulseaudio)))

gnu/packages/tex.scm

@@ -102,21 +102,23 @@
        (base32
         "0khyi6h015r2zfqgg0a44a2j7vmr1cy42knw7jbss237yvakc07y"))
       (patches
-       (list
+       (let ((arch-patch
-        ;; This is required for compatibility with Poppler 0.64.0 and to fix a
+              (lambda (name revision hash)
-        ;; segmentation fault in dvipdfm-x from XeTeX, and also contains a fix
-        ;; for CVE-2018-17407.
                 (origin
                   (method url-fetch)
-          (uri (string-append "http://www.linuxfromscratch.org/patches/blfs/"
+                  (uri (string-append "https://git.archlinux.org/svntogit/packages.git"
-                              "svn/texlive-" version "-source-upstream_fixes-2.patch"))
+                                      "/plain/trunk/" name "?h=packages/texlive-bin"
-          (file-name "texlive-poppler-compat.patch")
+                                      "&id=" revision))
-          (sha256
+                  (file-name (string-append "texlive-bin-" name))
-           (base32
+                  (sha256 (base32 hash)))))
-            "04sxy1qv9y575mxwyg3y7rx7mh540pfjqx7yni7ncb5wjbq9pq1a")))
+             (arch-revision "e1975bce0b9d270d7c9773c5beb7e87d61ee8f57"))
-        (search-patch "texlive-bin-luatex-poppler-compat.patch")
+         (append (search-patches  "texlive-bin-CVE-2018-17407.patch"
-        (search-patch "texlive-bin-pdftex-poppler-compat.patch")
+                                  "texlive-bin-luatex-poppler-compat.patch")
-        (search-patch "texlive-bin-xetex-poppler-compat.patch")))))
+                 (list
+                  (arch-patch "pdftex-poppler0.72.patch" arch-revision
+                              "0p46b6xxxg2s3hx67r0wpz16g3qygx65hpc581xs3jz5pvsiq3y7")
+                  (arch-patch "xetex-poppler-fixes.patch" arch-revision
+                              "1jj1p5zkjljb7id9pjv29cw0cf8mwrgrh4ackgzz9c200vaqpsvx")))))))
    (build-system gnu-build-system)
    (inputs
     `(("texlive-extra-src" ,texlive-extra-src)
@@ -195,9 +197,9 @@
             #t))
         (add-after 'unpack 'use-code-for-new-poppler
           (lambda _
-            (copy-file "texk/web2c/pdftexdir/pdftoepdf-newpoppler.cc"
+            (copy-file "texk/web2c/pdftexdir/pdftoepdf-poppler0.72.0.cc"
                        "texk/web2c/pdftexdir/pdftoepdf.cc")
-            (copy-file "texk/web2c/pdftexdir/pdftosrc-newpoppler.cc"
+            (copy-file "texk/web2c/pdftexdir/pdftosrc-poppler0.72.0.cc"
                        "texk/web2c/pdftexdir/pdftosrc.cc")
             #t))
         (add-after 'unpack 'disable-failing-test

gnu/packages/valgrind.scm

@@ -32,7 +32,7 @@
 (define-public valgrind
   (package
     (name "valgrind")
-    (version "3.13.0")
+    (version "3.14.0")
     (source (origin
               (method url-fetch)
               (uri (list (string-append "http://www.valgrind.org/downloads"
@@ -41,9 +41,8 @@
                                         "/valgrind-" version ".tar.bz2")))
               (sha256
                (base32
-                "0fqc3684grrbxwsic1rc5ryxzxmigzjx9p5vf3lxa37h0gpq0rnp"))
+                "19ds42jwd89zrsjb94g7gizkkzipn8xik3xykrpcqxylxyzi2z03"))
-              (patches (search-patches "valgrind-enable-arm.patch"
+              (patches (search-patches "valgrind-enable-arm.patch"))))
-                                       "valgrind-glibc-compat.patch"))))
     (build-system gnu-build-system)
     (outputs '("doc"                              ;16 MB
                "out"))
@@ -79,11 +78,7 @@
 tools.  There are Valgrind tools that can automatically detect many memory
 management and threading bugs, and profile your programs in detail.  You can
 also use Valgrind to build new tools.")
-    (license gpl2+)
+    (license gpl2+)))
-
-    ;; Building VEX on mips64el-linux fails with "opcode not supported on this
-    ;; processor: mips3".
-    (supported-systems (delete "mips64el-linux" %supported-systems))))
 
 (define-public valgrind-3.15
   (package

gnu/packages/video.scm

@@ -700,7 +700,7 @@ libebml is a C++ library to read and write EBML files.")
 (define-public libva
   (package
     (name "libva")
-    (version "2.3.0")
+    (version "2.4.0")
     (source
      (origin
        (method url-fetch)
@@ -712,7 +712,7 @@ libebml is a C++ library to read and write EBML files.")
              (string-append "https://www.freedesktop.org/software/vaapi/releases/"
                             "libva/libva-" version "/libva-" version ".tar.bz2")))
        (sha256
-        (base32 "1r6wiw4k044cpb39rfqqdw6qmzw0268whpz124hywck9v980x130"))))
+        (base32 "14ckq67z3pcd7jrnrm3ckss440g6dzp2m0ff5rps54qmq9b309lr"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))
@@ -2272,15 +2272,16 @@ and JACK.")
 (define-public libvdpau
   (package
     (name "libvdpau")
-    (version "1.1.1")
+    (version "1.2")
     (source
       (origin
         (method url-fetch)
-        (uri (string-append "https://secure.freedesktop.org/~aplattner/vdpau/"
+        (uri (string-append "https://gitlab.freedesktop.org/vdpau/libvdpau"
-                            name "-" version ".tar.bz2"))
+                            "/uploads/14b620084c027d546fa0b3f083b800c6/"
+                            "libvdpau-" version ".tar.bz2"))
         (sha256
          (base32
-          "0dnpb0yh7v6rvckx82kxg045rd9rbsw25wjv7ad5n8h94s9h2yl5"))))
+          "01ps6g6p6q7j2mjm9vn44pmzq3g75mm7mdgmnhb1qkjjdwc9njba"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))

gnu/packages/vulkan.scm

@@ -159,16 +159,17 @@ interpretation of the specifications for these languages.")
 (define-public vulkan-headers
   (package
     (name "vulkan-headers")
-    (version "1.1.99")
+    (version "1.1.106")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
              (url "https://github.com/KhronosGroup/Vulkan-Headers")
              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
        (sha256
         (base32
-         "166z6wn5kxnqm55zgzhmqa9hg48d11bfmi3wnf1mqhsx48xw6b8z"))))
+         "0idw7q715ikj575qmspvgq2gzc6c1sj581b8z3xnv6wz9qbzrmsd"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f))                    ; No tests.
@@ -189,9 +190,10 @@ interpretation of the specifications for these languages.")
        (uri (git-reference
              (url "https://github.com/KhronosGroup/Vulkan-Loader")
              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
        (sha256
         (base32
-         "02m3sdcbl8s6qr1nsba5621vg3f4akkfaa7g9hi70cpvws4x0gg8"))))
+         "1ypjd2gfxdwldnqrrqy6bnjln5mml62a9k5pfi451srcxznijjai"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f ;FIXME: 23/39 tests fail.  Try "tests/run_all_tests.sh".
@@ -203,20 +205,14 @@ interpretation of the specifications for these languages.")
              (substitute* "CMakeLists.txt" ((".*spirv_tools_commit_id.h.*") ""))
              #t)))
        #:configure-flags (list
-                          "-DBUILD_LAYERS=OFF" ; FIXME: Fails to build.
                           "-DBUILD_TESTS=OFF" ; FIXME: Needs 'googletest' submodule.
                           (string-append "-DCMAKE_INSTALL_LIBDIR="
                                          (assoc-ref %outputs "out") "/lib"))))
-    (inputs `(("glslang" ,glslang)
+    (native-inputs `(("libxrandr" ,libxrandr)
-              ("libxcb" ,libxcb)
+                     ("pkg-config" ,pkg-config)
-              ("libx11" ,libx11)
+                     ("python" ,python)
-              ("libxrandr" ,libxrandr)
-              ("mesa" ,mesa)
-              ("spirv-tools" ,spirv-tools)
                      ("vulkan-headers" ,vulkan-headers)
                      ("wayland" ,wayland)))
-    (native-inputs `(("pkg-config" ,pkg-config)
-                     ("python" ,python)))
     (home-page
      "https://github.com/KhronosGroup/Vulkan-Loader")
     (synopsis "Khronos official ICD loader and validation layers for Vulkan")
@@ -238,29 +234,31 @@ and the ICD.")
 (define-public vulkan-tools
   (package
     (name "vulkan-tools")
-    (version "1.1.97.0")
+    (version (package-version vulkan-headers))
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
              (url "https://github.com/KhronosGroup/Vulkan-Tools")
-             (commit (string-append "sdk-" version))))
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
        (sha256
         (base32
-         "1p70wk0x546w1dlvlghrqm4l4b6ql0x08pdybyagnwwph0gdvqy3"))))
+         "0swqyk16mbkivyk79dpqbhpw05a7yrakqynywznr5zgqbc0z4gj8"))))
     (build-system cmake-build-system)
     (inputs
      `(("glslang" ,glslang)
        ("libxrandr" ,libxrandr)
-       ("mesa" ,mesa)
-       ("vulkan-headers" ,vulkan-headers)
        ("vulkan-loader" ,vulkan-loader)
        ("wayland" ,wayland)))
     (native-inputs
      `(("pkg-config" ,pkg-config)
-       ("python" ,python)))
+       ("python" ,python)
+       ("vulkan-headers" ,vulkan-headers)))
     (arguments
-     `(#:tests? #f))                    ; No tests.
+     `(#:tests? #f                      ; No tests.
+       #:configure-flags (list (string-append "-DGLSLANG_INSTALL_DIR="
+                               (assoc-ref %build-inputs "glslang")))))
     (home-page
      "https://github.com/KhronosGroup/Vulkan-Tools")
     (synopsis "Tools and utilities for Vulkan")

gnu/packages/wm.scm

@@ -1160,6 +1160,7 @@ modules for building a Wayland compositor.")
               ("elogind" ,elogind)
               ("gdk-pixbuf" ,gdk-pixbuf)
               ("json-c" ,json-c)
+              ("libevdev" ,libevdev)
               ("libinput" ,libinput)
               ("libxkbcommon" ,libxkbcommon)
               ("pango" ,pango)

gnu/packages/xdisorg.scm

@@ -3,7 +3,7 @@
 ;;; Copyright © 2014, 2015, 2016 Mark H Weaver <mhw@netris.org>
 ;;; Copyright © 2014 Eric Bavier <bavier@member.fsf.org>
 ;;; Copyright © 2014, 2015, 2016 Alex Kost <alezost@gmail.com>
-;;; Copyright © 2013, 2015, 2017, 2018 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2013, 2015, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2015, 2016 Mathieu Lirzin <mthl@gnu.org>
 ;;; Copyright © 2015 Alexander I.Grafov <grafov@gmail.com>
 ;;; Copyright © 2015 Andy Wingo <wingo@igalia.com>
@@ -219,14 +219,14 @@ avoiding password prompts when X11 forwarding has already been setup.")
 (define-public libxkbcommon
   (package
     (name "libxkbcommon")
-    (version "0.8.2")
+    (version "0.8.4")
     (source (origin
              (method url-fetch)
-             (uri (string-append "https://xkbcommon.org/download/" name "-"
+             (uri (string-append "https://xkbcommon.org/download/libxkbcommon-"
                                  version ".tar.xz"))
              (sha256
               (base32
-               "136mdq11lrwg6rjmm44lmysxxgb9c35p4sq6k0cd129x82rw9f3s"))))
+               "12vc91ydhphd5sddz15560r41l7k0i7mq6nma8kkbzdp6bwwzpb0"))))
     (build-system gnu-build-system)
     (inputs
      `(("libx11" ,libx11)
@@ -379,7 +379,7 @@ rasterisation.")
 (define-public libdrm
   (package
     (name "libdrm")
-    (version "2.4.96")
+    (version "2.4.97")
     (source
       (origin
         (method url-fetch)
@@ -389,23 +389,24 @@ rasterisation.")
                ".tar.bz2"))
         (sha256
          (base32
-          "14xkip83qgljjaahzq40qgl60j54q7k00la1hbf5kk5lgg7ilmhd"))
+          "08yimlp6jir1rs5ajgdx74xa5qdzcqahpdzdk0rmkmhh7vdcrl3p"))
         (patches (search-patches "libdrm-symbol-check.patch"))))
-    (build-system gnu-build-system)
+    (build-system meson-build-system)
     (arguments
      `(#:configure-flags
        '(,@(match (%current-system)
-             ("armhf-linux"
+             ((or "armhf-linux" "aarch64-linux")
-              '("--enable-exynos-experimental-api"
+              '("-Dexynos=true"
-                "--enable-omap-experimental-api"
+                "-Domap=true"
-                "--enable-etnaviv-experimental-api"
+                "-Detnaviv=true"
-                "--enable-tegra-experimental-api"
+                "-Dtegra=true"
-                "--enable-freedreno-kgsl"))
+                "-Dfreedreno-kgsl=true"))
-             ("aarch64-linux"
+             (_ '())))
-              '("--enable-tegra-experimental-api"
+
-                "--enable-etnaviv-experimental-api"
+       #:phases (modify-phases %standard-phases
-                "--enable-freedreno-kgsl"))
+                  (replace 'check
-             (_ '())))))
+                    (lambda _
+                      (invoke "meson" "test" "--timeout-multiplier" "5"))))))
     (inputs
      `(("libpciaccess" ,libpciaccess)))
     (native-inputs

gnu/packages/xiph.scm

@@ -235,7 +235,6 @@ It currently supports:
 (define flac
   (package
    (name "flac")
-   (replacement flac/fixed)
    (version "1.3.2")
    (source (origin
             (method url-fetch)
@@ -243,7 +242,8 @@ It currently supports:
                                 version ".tar.xz"))
             (sha256
              (base32
-              "0gymm2j3276kr9nz6vmgfwsdfrq6c449n40a0mzz8h6wc7nw7kwi"))))
+              "0gymm2j3276kr9nz6vmgfwsdfrq6c449n40a0mzz8h6wc7nw7kwi"))
+            (patches (search-patches "flac-CVE-2017-6888.patch"))))
    (build-system gnu-build-system)
    (arguments
     `(#:parallel-tests? #f))
@@ -257,14 +257,6 @@ meaning that audio is compressed in FLAC without any loss in quality.")
                                "See COPYING in the distribution.")) ; and LGPL and GPL
    (home-page "https://xiph.org/flac/")))
 
-(define flac/fixed
-  (package
-    (inherit flac)
-    (source
-      (origin
-        (inherit (package-source flac))
-        (patches (search-patches "flac-CVE-2017-6888.patch"))))))
-
 (define libkate
   (package
    (name "libkate")

gnu/packages/xorg.scm

@@ -1082,7 +1082,7 @@ synchronization between the X server and direct-rendering clients.")
 (define-public libfontenc
   (package
     (name "libfontenc")
-    (version "1.1.3")
+    (version "1.1.4")
     (source
       (origin
         (method url-fetch)
@@ -1092,14 +1092,14 @@ synchronization between the X server and direct-rendering clients.")
                ".tar.bz2"))
         (sha256
           (base32
-            "08gxmrhgw97mv0pvkfmd46zzxrn6zdw4g27073zl55gwwqq8jn3h"))))
+            "0y90170dp8wsidr1dzza0grxr1lfh30ji3b5vkjz4j6x1n0wxz1c"))))
     (build-system gnu-build-system)
     (inputs
       `(("zlib" ,zlib)
         ("xorgproto" ,xorgproto)))
     (native-inputs
       `(("pkg-config" ,pkg-config)))
-    (home-page "https://www.x.org/wiki/")
+    (home-page "https://gitlab.freedesktop.org/xorg/lib/libfontenc")
     (synopsis "Xorg font encoding library")
     (description "Xorg font encoding library.")
     (license license:x11)))
@@ -1268,7 +1268,7 @@ with the Cygwin XWin server when running X11 in a rootless mode.")
 (define-public libxcomposite
   (package
     (name "libxcomposite")
-    (version "0.4.4")
+    (version "0.4.5")
     (source
       (origin
         (method url-fetch)
@@ -1278,7 +1278,7 @@ with the Cygwin XWin server when running X11 in a rootless mode.")
                ".tar.bz2"))
         (sha256
           (base32
-            "0y21nfpa5s8qmx0srdlilyndas3sgl0c6rc26d5fx2vx436m1qpd"))))
+            "13sfcglvz87vl58hd9rszwr73z0z4nwga3c12rfh7f5s2ln8l8dk"))))
     (build-system gnu-build-system)
     (propagated-inputs
      ;; xcomposite.pc refers to all these.
@@ -1357,7 +1357,7 @@ configuration files.")
 (define-public libxkbfile
   (package
     (name "libxkbfile")
-    (version "1.0.9")
+    (version "1.1.0")
     (source
       (origin
         (method url-fetch)
@@ -1367,7 +1367,7 @@ configuration files.")
                ".tar.bz2"))
         (sha256
           (base32
-            "0smimr14zvail7ar68n7spvpblpdnih3jxrva7cpa6cn602px0ai"))))
+            "1irq9crvscd3yb8sr802dhvvfr35jdy1n2yz094xplmd42mbv3bm"))))
     (build-system gnu-build-system)
     (inputs
       `(("libx11" ,libx11)))
@@ -1554,7 +1554,7 @@ input from UTF-8 into the locale's encoding.")
 (define-public makedepend
   (package
     (name "makedepend")
-    (version "1.0.5")
+    (version "1.0.6")
     (source
       (origin
         (method url-fetch)
@@ -1564,7 +1564,7 @@ input from UTF-8 into the locale's encoding.")
                ".tar.bz2"))
         (sha256
           (base32
-            "09alw99r6y2bbd1dc786n3jfgv4j520apblyn7cw6jkjydshba7p"))))
+            "072h9nzh8s5vqfz35dli4fba36fnr219asjrb7p89n8ph0paan6m"))))
     (build-system gnu-build-system)
     (inputs
       `(("xorgproto" ,xorgproto)))
@@ -3839,7 +3839,7 @@ extension to the X11 protocol.  It includes:
 (define-public xkeyboard-config
   (package
     (name "xkeyboard-config")
-    (version "2.24")
+    (version "2.26")
     (source
       (origin
         (method url-fetch)
@@ -3849,7 +3849,7 @@ extension to the X11 protocol.  It includes:
               ".tar.bz2"))
         (sha256
           (base32
-            "1my4786pd7iv5x392r9skj3qclmbd26nqzvh2fllwkkbyj08bcci"))))
+            "13h3381pfp4pv32189zkfsj2x0alr91xj6dqii76rl0c8v3ihdrr"))))
     (build-system gnu-build-system)
     (inputs
       `(("gettext" ,gettext-minimal)
@@ -4970,7 +4970,7 @@ new API's in libXft, or the legacy API's in libX11.")
 (define-public libxvmc
   (package
     (name "libxvmc")
-    (version "1.0.10")
+    (version "1.0.11")
     (source
       (origin
         (method url-fetch)
@@ -4980,7 +4980,7 @@ new API's in libXft, or the legacy API's in libX11.")
                ".tar.bz2"))
         (sha256
           (base32
-            "0bpffxr5dal90a8miv2w0rif61byqxq2f5angj4z1bnznmws00g5"))))
+            "0bb2c996p0smp2lwckffcfh4701bzv7266xh230ag0x68ka38bja"))))
     (build-system gnu-build-system)
     (propagated-inputs
       `(("libxv" ,libxv)))
@@ -5132,7 +5132,7 @@ over Xlib, including:
         ("xcb-util-renderutil" ,xcb-util-renderutil)
         ("xcb-util-wm" ,xcb-util-wm)))
     (native-inputs
-       `(("python" ,python-minimal-wrapper)
+     `(("python" ,python-wrapper)
        ("pkg-config" ,pkg-config)))
     (arguments
      `(#:parallel-tests? #f
@@ -5205,16 +5205,7 @@ draggable titlebars and borders.")
 (define-public xorg-server-for-tests
   (hidden-package
    (package
-     (inherit xorg-server)
+     (inherit xorg-server))))
-     (version "1.20.3")
-     (source (origin
-               (inherit (package-source xorg-server))
-               (uri (string-append
-                     "mirror://xorg/individual/xserver/"
-                     "xorg-server-" version ".tar.bz2"))
-               (sha256
-                (base32
-                 "1ph1j8gy5cazsq05krq9kppjx5v1sl75pbdka8ibxb1cq5kf8g0v")))))))
 
 (define-public xorg-server-xwayland
   (package
@@ -5275,7 +5266,7 @@ draggable titlebars and borders.")
 (define-public libxcursor
   (package
     (name "libxcursor")
-    (version "1.1.15")
+    (version "1.2.0")
     (source
       (origin
         (method url-fetch)
@@ -5285,7 +5276,7 @@ draggable titlebars and borders.")
                ".tar.bz2"))
         (sha256
           (base32
-            "0syzlfvh29037p0vnlc8f3jxz8nl55k65blswsakklkwsc6nfki9"))))
+            "10l7c9fm0jmpkm9ab9dz8r6m1pr87vvgqjnbx1psz50h4pwfklrs"))))
     (build-system gnu-build-system)
     (propagated-inputs
       `(("libx11" ,libx11)

guix/build/ruby-build-system.scm

@@ -86,7 +86,7 @@ operation is not deterministic, we replace it with `find`."
   "Remove the original gemspec, if present, and replace it with a new one.
 This avoids issues with upstream gemspecs requiring tools such as git to
 generate the files list."
-  (when (gem-archive? source)
+  (if (gem-archive? source)
       (let ((gemspec (or (false-if-exception (first-gemspec))
                          ;; Make new gemspec if one wasn't shipped.
                          ".gemspec")))
@@ -107,7 +107,8 @@ generate the files list."
               #t)
             (lambda ()
               (close-pipe pipe)))))
-    #t))
+      (display "extract-gemspec: skipping as source is not a gem archive\n"))
+  #t)
 
 (define* (build #:key source #:allow-other-keys)
   "Build a new gem using the gemspec from the SOURCE gem."
@@ -138,11 +139,15 @@ GEM-FLAGS are passed to the 'gem' invokation, if present."
          (gem-file-basename (basename gem-file))
          (gem-name (substring gem-file-basename
                               0
-                              (- (string-length gem-file-basename) 4))))
+                              (- (string-length gem-file-basename) 4)))
+         (gem-dir (string-append vendor-dir "/gems/" gem-name)))
     (setenv "GEM_VENDOR" vendor-dir)
 
     (or (zero?
+          ;; 'zero? system*' allows the custom error handling to function as
+          ;; expected, while 'invoke' raises its own exception.
          (apply system* "gem" "install" gem-file
+                "--verbose"
                 "--local" "--ignore-dependencies" "--vendor"
                 ;; Executables should go into /bin, not
                 ;; /lib/ruby/gems.
@@ -163,7 +168,7 @@ GEM-FLAGS are passed to the 'gem' invokation, if present."
     ;; For gems with native extensions, several Makefile-related files
     ;; are created that contain timestamps or other elements making
     ;; them not reproducible.  They are unnecessary so we remove them.
-    (when (file-exists? (string-append vendor-dir "/ext"))
+    (when (file-exists? (string-append gem-dir "/ext"))
       (for-each (lambda (file)
                   (log-file-deletion file)
                   (delete-file file))
@@ -172,7 +177,7 @@ GEM-FLAGS are passed to the 'gem' invokation, if present."
                              "page-Makefile.ri")
                  (find-files (string-append vendor-dir "/extensions")
                              "gem_make.out")
-                 (find-files (string-append vendor-dir "/ext")
+                 (find-files (string-append gem-dir "/ext")
                              "Makefile"))))
 
     #t))