gnu: Add fastahack.
* gnu/packages/bioinformatics.scm (fastahack): New variable.
This commit is contained in:
parent
70782dddff
commit
7d71557d4d
|
@ -14962,3 +14962,36 @@ combinatorial configurations.\", G. Ehrlich - Journal of the ACM (JACM),
|
|||
(description "A tiny C library for managing SOM (Self-Organizing Maps)
|
||||
neural networks.")
|
||||
(license license:gpl3))))
|
||||
|
||||
(define-public fastahack
|
||||
(let ((commit "c68cebb4f2e5d5d2b70cf08fbdf1944e9ab2c2dd"))
|
||||
(package
|
||||
(name "fastahack")
|
||||
(version (git-version "0.0.0" "1" commit))
|
||||
(source (origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/ekg/fastahack/")
|
||||
(commit commit)))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32 "0hfdv67l9g611i2ck4l92pd6ygmsp9g1ph4zx1ni7qkpsikf0l19"))))
|
||||
(build-system gnu-build-system)
|
||||
(arguments
|
||||
`(#:tests? #f ; Unclear how to run tests: https://github.com/ekg/fastahack/issues/15
|
||||
#:phases
|
||||
(modify-phases %standard-phases
|
||||
(delete 'configure) ; There is no configure phase.
|
||||
(replace 'install
|
||||
(lambda* (#:key outputs #:allow-other-keys)
|
||||
(let ((bin (string-append (assoc-ref outputs "out") "/bin")))
|
||||
(install-file "fastahack" bin))
|
||||
#t)))))
|
||||
(home-page "https://github.com/ekg/fastahack")
|
||||
(synopsis "Indexing and sequence extraction from FASTA files")
|
||||
(description "Fastahack is a small application for indexing and
|
||||
extracting sequences and subsequences from FASTA files. The included library
|
||||
provides a FASTA reader and indexer that can be embedded into applications
|
||||
which would benefit from directly reading subsequences from FASTA files. The
|
||||
library automatically handles index file generation and use.")
|
||||
(license (list license:expat license:gpl2)))))
|
||||
|
|
Loading…
Reference in New Issue