gnu: Add fastahack.
* gnu/packages/bioinformatics.scm (fastahack): New variable.
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@ -14962,3 +14962,36 @@ combinatorial configurations.\", G. Ehrlich - Journal of the ACM (JACM),
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(description "A tiny C library for managing SOM (Self-Organizing Maps)
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(description "A tiny C library for managing SOM (Self-Organizing Maps)
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neural networks.")
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neural networks.")
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(license license:gpl3))))
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(license license:gpl3))))
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(define-public fastahack
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(let ((commit "c68cebb4f2e5d5d2b70cf08fbdf1944e9ab2c2dd"))
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(package
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(name "fastahack")
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(version (git-version "0.0.0" "1" commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/ekg/fastahack/")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0hfdv67l9g611i2ck4l92pd6ygmsp9g1ph4zx1ni7qkpsikf0l19"))))
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(build-system gnu-build-system)
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(arguments
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`(#:tests? #f ; Unclear how to run tests: https://github.com/ekg/fastahack/issues/15
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#:phases
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(modify-phases %standard-phases
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(delete 'configure) ; There is no configure phase.
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(replace 'install
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((bin (string-append (assoc-ref outputs "out") "/bin")))
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(install-file "fastahack" bin))
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#t)))))
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(home-page "https://github.com/ekg/fastahack")
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(synopsis "Indexing and sequence extraction from FASTA files")
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(description "Fastahack is a small application for indexing and
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extracting sequences and subsequences from FASTA files. The included library
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provides a FASTA reader and indexer that can be embedded into applications
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which would benefit from directly reading subsequences from FASTA files. The
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library automatically handles index file generation and use.")
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(license (list license:expat license:gpl2)))))
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