gnu: Add r-hardyweinberg.
* gnu/packages/cran.scm (r-hardyweinberg): New variable.
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@ -1349,3 +1349,34 @@ Various diagnostic plots are available to inspect the quality of the
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imputations.")
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imputations.")
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;; Any of these two versions.
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;; Any of these two versions.
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(license (list license:gpl2 license:gpl3))))
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(license (list license:gpl2 license:gpl3))))
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(define-public r-hardyweinberg
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(package
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(name "r-hardyweinberg")
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(version "1.5.8")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "HardyWeinberg" version))
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(sha256
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(base32
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"0xbcchmzii0jv0ygr91n72r39j1axraxd2i607b56v4yd5d8sy4k"))))
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(properties `((upstream-name . "HardyWeinberg")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-mice" ,r-mice)
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("r-rcpp" ,r-rcpp)))
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(home-page "https://cran.r-project.org/package=HardyWeinberg")
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(synopsis "Statistical tests and graphics for Hardy-Weinberg equilibrium")
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(description
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"This package contains tools for exploring Hardy-Weinberg equilibrium for
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diallelic genetic marker data. All classical tests (chi-square, exact,
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likelihood-ratio and permutation tests) for Hardy-Weinberg equilibrium are
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included in the package, as well as functions for power computation and for
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the simulation of marker data under equilibrium and disequilibrium. Routines
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for dealing with markers on the X-chromosome are included. Functions for
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testing equilibrium in the presence of missing data by using multiple
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imputation are also provided. Implements several graphics for exploring the
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equilibrium status of a large set of diallelic markers: ternary plots with
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acceptance regions, log-ratio plots and Q-Q plots.")
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(license license:gpl2+)))
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