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gnu: r-org-mm-eg-db: Move to (gnu packages bioconductor). 

* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-mm-eg-db): ...to here.
This commit is contained in:
Ricardo Wurmus 2019-03-06 21:43:33 +01:00
parent d56df35a25
commit 8035819f4c
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GPG Key ID: 197A5888235FACAC
2 changed files with 26 additions and 26 deletions
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26
gnu/packages/bioconductor.scm
View File

@ -464,6 +464,32 @@ based on mapping using Entrez Gene identifiers.")
on mapping using Entrez Gene identifiers.")
(license license:artistic2.0)))
(define-public r-org-mm-eg-db
(package
(name "r-org-mm-eg-db")
(version "3.7.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"org.Mm.eg.db_" version ".tar.gz"))
(sha256
(base32
"1i3nvrd3wjigf1rmgxq1p5xxc3p8v02h5gwi62s30rkrsyjjfjxx"))))
(properties
`((upstream-name . "org.Mm.eg.db")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)))
(home-page "https://www.bioconductor.org/packages/org.Mm.eg.db/")
(synopsis "Genome wide annotation for Mouse")
(description
"This package provides mappings from Entrez gene identifiers to various
annotations for the genome of the model mouse Mus musculus.")
(license license:artistic2.0)))
(define-public r-bsgenome-hsapiens-ucsc-hg19
(package
(name "r-bsgenome-hsapiens-ucsc-hg19")

26
gnu/packages/bioinformatics.scm
View File

@ -7980,32 +7980,6 @@ genomation package. Included are Chip Seq, Methylation and Cage data,
downloaded from Encode.")
(license license:gpl3+)))
(define-public r-org-mm-eg-db
(package
(name "r-org-mm-eg-db")
(version "3.7.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"org.Mm.eg.db_" version ".tar.gz"))
(sha256
(base32
"1i3nvrd3wjigf1rmgxq1p5xxc3p8v02h5gwi62s30rkrsyjjfjxx"))))
(properties
`((upstream-name . "org.Mm.eg.db")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)))
(home-page "https://www.bioconductor.org/packages/org.Mm.eg.db/")
(synopsis "Genome wide annotation for Mouse")
(description
"This package provides mappings from Entrez gene identifiers to various
annotations for the genome of the model mouse Mus musculus.")
(license license:artistic2.0)))
(define-public r-seqlogo
(package
(name "r-seqlogo")