gnu: Add HTSeq.

* gnu/packages/bioinformatics.scm (htseq): New variable.
This commit is contained in:
Ricardo Wurmus 2015-02-20 16:41:50 +01:00 committed by Ricardo Wurmus
parent 5eb86b64d1
commit 85652f599a
1 changed files with 24 additions and 0 deletions

View File

@ -311,6 +311,30 @@ several alignment strategies enable effective alignment of RNA-seq reads, in
particular, reads spanning multiple exons.")
(license license:gpl3+)))
(define-public htseq
(package
(name "htseq")
(version "0.6.1")
(source (origin
(method url-fetch)
(uri (string-append
"https://pypi.python.org/packages/source/H/HTSeq/HTSeq-"
version ".tar.gz"))
(sha256
(base32
"1i85ppf2j2lj12m0x690qq5nn17xxk23pbbx2c83r8ayb5wngzwv"))))
(build-system python-build-system)
(arguments `(#:python ,python-2)) ; only Python 2 is supported
(inputs
`(("python-numpy" ,python2-numpy)
("python-setuptools" ,python2-setuptools)))
(home-page "http://www-huber.embl.de/users/anders/HTSeq/")
(synopsis "Analysing high-throughput sequencing data with Python")
(description
"HTSeq is a Python package that provides infrastructure to process data
from high-throughput sequencing assays.")
(license license:gpl3+)))
(define-public rseqc
(package
(name "rseqc")