gnu: Add Biopython.
* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): New variables.
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@ -185,6 +185,39 @@ pybedtools extends BEDTools by offering feature-level manipulations from with
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Python.")
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Python.")
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(license license:gpl2+)))
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(license license:gpl2+)))
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(define-public python-biopython
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(package
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(name "python-biopython")
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(version "1.65")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"http://biopython.org/DIST/biopython-"
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version ".tar.gz"))
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(sha256
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(base32
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"13m8s9jkrw40zvdp1rl709n6lmgdh4f52aann7gzr6sfp0fwhg26"))))
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(build-system python-build-system)
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(inputs
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`(("python-numpy" ,python-numpy)))
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(native-inputs
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`(("python-setuptools" ,python2-setuptools)))
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(home-page "http://biopython.org/")
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(synopsis "Tools for biological computation in Python")
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(description
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"Biopython is a set of tools for biological computation including parsers
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for bioinformatics files into Python data structures; interfaces to common
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bioinformatics programs; a standard sequence class and tools for performing
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common operations on them; code to perform data classification; code for
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dealing with alignments; code making it easy to split up parallelizable tasks
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into separate processes; and more.")
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(license (license:non-copyleft "http://www.biopython.org/DIST/LICENSE"))))
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(define-public python2-biopython
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(package (inherit (package-with-python2 python-biopython))
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(inputs
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`(("python2-numpy" ,python2-numpy)))))
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(define-public bowtie
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(define-public bowtie
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(package
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(package
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(name "bowtie")
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(name "bowtie")
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