gnu: Add Biopython.

* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): New
  variables.
This commit is contained in:
Ricardo Wurmus 2015-04-15 17:46:35 +02:00
parent 40b084a326
commit 85c37e29a4
1 changed files with 33 additions and 0 deletions

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@ -185,6 +185,39 @@ pybedtools extends BEDTools by offering feature-level manipulations from with
Python.")
(license license:gpl2+)))
(define-public python-biopython
(package
(name "python-biopython")
(version "1.65")
(source (origin
(method url-fetch)
(uri (string-append
"http://biopython.org/DIST/biopython-"
version ".tar.gz"))
(sha256
(base32
"13m8s9jkrw40zvdp1rl709n6lmgdh4f52aann7gzr6sfp0fwhg26"))))
(build-system python-build-system)
(inputs
`(("python-numpy" ,python-numpy)))
(native-inputs
`(("python-setuptools" ,python2-setuptools)))
(home-page "http://biopython.org/")
(synopsis "Tools for biological computation in Python")
(description
"Biopython is a set of tools for biological computation including parsers
for bioinformatics files into Python data structures; interfaces to common
bioinformatics programs; a standard sequence class and tools for performing
common operations on them; code to perform data classification; code for
dealing with alignments; code making it easy to split up parallelizable tasks
into separate processes; and more.")
(license (license:non-copyleft "http://www.biopython.org/DIST/LICENSE"))))
(define-public python2-biopython
(package (inherit (package-with-python2 python-biopython))
(inputs
`(("python2-numpy" ,python2-numpy)))))
(define-public bowtie
(package
(name "bowtie")