gnu: Add Biopython.
* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): New variables.
This commit is contained in:
parent
40b084a326
commit
85c37e29a4
|
@ -185,6 +185,39 @@ pybedtools extends BEDTools by offering feature-level manipulations from with
|
|||
Python.")
|
||||
(license license:gpl2+)))
|
||||
|
||||
(define-public python-biopython
|
||||
(package
|
||||
(name "python-biopython")
|
||||
(version "1.65")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (string-append
|
||||
"http://biopython.org/DIST/biopython-"
|
||||
version ".tar.gz"))
|
||||
(sha256
|
||||
(base32
|
||||
"13m8s9jkrw40zvdp1rl709n6lmgdh4f52aann7gzr6sfp0fwhg26"))))
|
||||
(build-system python-build-system)
|
||||
(inputs
|
||||
`(("python-numpy" ,python-numpy)))
|
||||
(native-inputs
|
||||
`(("python-setuptools" ,python2-setuptools)))
|
||||
(home-page "http://biopython.org/")
|
||||
(synopsis "Tools for biological computation in Python")
|
||||
(description
|
||||
"Biopython is a set of tools for biological computation including parsers
|
||||
for bioinformatics files into Python data structures; interfaces to common
|
||||
bioinformatics programs; a standard sequence class and tools for performing
|
||||
common operations on them; code to perform data classification; code for
|
||||
dealing with alignments; code making it easy to split up parallelizable tasks
|
||||
into separate processes; and more.")
|
||||
(license (license:non-copyleft "http://www.biopython.org/DIST/LICENSE"))))
|
||||
|
||||
(define-public python2-biopython
|
||||
(package (inherit (package-with-python2 python-biopython))
|
||||
(inputs
|
||||
`(("python2-numpy" ,python2-numpy)))))
|
||||
|
||||
(define-public bowtie
|
||||
(package
|
||||
(name "bowtie")
|
||||
|
|
Loading…
Reference in New Issue