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gnu: vsearch: Update to 2.9.1. 

* gnu/packages/bioinformatics.scm (vsearch): Update to 2.9.1.
* gnu/packages/patches/vsearch-unbundle-cityhash.patch: Update.
This commit is contained in:
Ricardo Wurmus 2018-11-08 09:46:42 +01:00
parent 15c9609482
commit 86c6928ea3
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
2 changed files with 5 additions and 5 deletions
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4
gnu/packages/bioinformatics.scm
View File

@ -6825,7 +6825,7 @@ SELECT or UPDATE queries to an end-point.")
(define-public vsearch
(package
(name "vsearch")
(version "2.8.0")
(version "2.9.1")
(source
(origin
(method git-fetch)
@ -6835,7 +6835,7 @@ SELECT or UPDATE queries to an end-point.")
(file-name (git-file-name name version))
(sha256
(base32
"0lrw6n75gmqkxl053yi2pwwvnzwf1r79ypzxgv6m0kw6df5fwv6r"))
"0vhrpjfdf75ba04b24xknp41790cvcgwl0vgpy7qbzj5xh2521ss"))
(patches (search-patches "vsearch-unbundle-cityhash.patch"))
(snippet
'(begin

6
gnu/packages/patches/vsearch-unbundle-cityhash.patch
View File

@ -6,7 +6,7 @@ index e56a8a2..4adcc48 100644
if TARGET_PPC
AM_CXXFLAGS=-Wall -Wsign-compare -O3 -g -mcpu=power8
else
-AM_CXXFLAGS=-Wall -Wsign-compare -O3 -g
-AM_CXXFLAGS=-Wall -Wsign-compare -O3 -g -march=x86-64 -mtune=generic
+AM_CXXFLAGS=-Wall -Wsign-compare -O3 -g -lcityhash
endif
@ -39,7 +39,7 @@ index e56a8a2..4adcc48 100644
-
if TARGET_WIN
-libcityhash_a_CXXFLAGS = -Wall -Wno-sign-compare -O3 -g -D_MSC_VER
-libcityhash_a_CXXFLAGS = $(AM_CXXFLAGS) -Wno-sign-compare -D_MSC_VER
-__top_builddir__bin_vsearch_LDFLAGS = -static
-__top_builddir__bin_vsearch_LDADD = libregex.a libcityhash.a libcpu_ssse3.a libcpu_sse2.a
+__top_builddir__bin_vsearch_LDFLAGS = -static -lcityhash
@ -47,7 +47,7 @@ index e56a8a2..4adcc48 100644
else
-libcityhash_a_CXXFLAGS = -Wall -Wno-sign-compare -O3 -g
-libcityhash_a_CXXFLAGS = $(AM_CXXFLAGS) -Wno-sign-compare
-
if TARGET_PPC
-__top_builddir__bin_vsearch_LDADD = libcityhash.a libcpu.a