gnu: Add python-ont-fast5-api.
* gnu/packages/bioinformatics.scm (python-ont-fast5-api): New variable.
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@ -14754,6 +14754,35 @@ vast-tools, an RNA-Seq pipeline for alternative splicing analysis. The plots
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are generated using @code{ggplot2}.")
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are generated using @code{ggplot2}.")
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(license license:expat)))
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(license license:expat)))
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(define-public python-ont-fast5-api
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(package
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(name "python-ont-fast5-api")
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(version "1.4.4")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/nanoporetech/ont_fast5_api.git")
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(commit (string-append "release_" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"03cbq4zbbwhll8ml2m9k8sa31mirsvcbjkrq1yna0kkzz9fad5fm"))))
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(build-system python-build-system)
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(propagated-inputs
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`(("python-numpy" ,python-numpy)
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("python-six" ,python-six)
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("python-h5py" ,python-h5py)
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("python-progressbar33" ,python-progressbar33)))
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(home-page "https://github.com/nanoporetech/ont_fast5_api")
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(synopsis "Interface to HDF5 files of the Oxford Nanopore fast5 file format")
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(description
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"This package provides a concrete implementation of the fast5 file schema
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using the generic @code{h5py} library, plain-named methods to interact with
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and reflect the fast5 file schema, and tools to convert between
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@code{multi_read} and @code{single_read} formats.")
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(license license:mpl2.0)))
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(define-public tbsp
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(define-public tbsp
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(let ((commit "ec8fff4410cfb13a677dbbb95cbbc60217e64907")
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(let ((commit "ec8fff4410cfb13a677dbbb95cbbc60217e64907")
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(revision "1"))
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(revision "1"))
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