From 89f40c5e4eea65cf93627fdd64d667b06598226f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 21 Sep 2016 22:45:37 +0200 Subject: [PATCH] gnu: Add r-gostats. * gnu/packages/bioinformatics.scm (r-gostats): New variable. --- gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 14be1e36fd..107e720601 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5278,6 +5278,36 @@ Enrichment Analysis} (GSEA).") analysis.") (license license:artistic2.0))) +(define-public r-gostats + (package + (name "r-gostats") + (version "2.38.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "GOstats" version)) + (sha256 + (base32 + "1hhw6vqr8f3g4jzq0v8f2za0r1h117j5s6av87zxs41cv7dq1wb3")))) + (properties `((upstream-name . "GOstats"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotate" ,r-annotate) + ("r-annotationdbi" ,r-annotationdbi) + ("r-annotationforge" ,r-annotationforge) + ("r-biobase" ,r-biobase) + ("r-category" ,r-category) + ("r-go-db" ,r-go-db) + ("r-graph" ,r-graph) + ("r-rbgl" ,r-rbgl))) + (home-page "http://bioconductor.org/packages/GOstats") + (synopsis "Tools for manipulating GO and microarrays") + (description + "This package provides a set of tools for interacting with GO and +microarray data. A variety of basic manipulation tools for graphs, hypothesis +testing and other simple calculations.") + (license license:artistic2.0))) + (define-public vsearch (package (name "vsearch")