gnu: Add r-triform.
* gnu/packages/bioconductor.scm (r-triform): New variable.
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@ -2555,3 +2555,27 @@ surface of a flowcell.")
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for DNA and protein sequences. This package supports several sequence
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for DNA and protein sequences. This package supports several sequence
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kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.")
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kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.")
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(license license:gpl2+)))
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(license license:gpl2+)))
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(define-public r-triform
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(package
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(name "r-triform")
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(version "1.24.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "triform" version))
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(sha256
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(base32
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"12ca24pv1r5vbw3rq345jqg7x3prrbsxk6445zikpzfblwmw0b4s"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-iranges" ,r-iranges)
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("r-yaml" ,r-yaml)))
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(home-page "https://bioconductor.org/packages/triform/")
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(synopsis "Find enriched regions in transcription factor ChIP-sequencing data")
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(description
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"The Triform algorithm uses model-free statistics to identify peak-like
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distributions of TF ChIP sequencing reads, taking advantage of an improved
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peak definition in combination with known profile characteristics.")
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(license license:gpl2)))
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