gnu: Add r-triform.

* gnu/packages/bioconductor.scm (r-triform): New variable.
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Ricardo Wurmus 2019-03-25 16:09:07 +01:00
parent 3080b81af6
commit 8a5460b4fb
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1 changed files with 24 additions and 0 deletions

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@ -2555,3 +2555,27 @@ surface of a flowcell.")
for DNA and protein sequences. This package supports several sequence
kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.")
(license license:gpl2+)))
(define-public r-triform
(package
(name "r-triform")
(version "1.24.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "triform" version))
(sha256
(base32
"12ca24pv1r5vbw3rq345jqg7x3prrbsxk6445zikpzfblwmw0b4s"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-iranges" ,r-iranges)
("r-yaml" ,r-yaml)))
(home-page "https://bioconductor.org/packages/triform/")
(synopsis "Find enriched regions in transcription factor ChIP-sequencing data")
(description
"The Triform algorithm uses model-free statistics to identify peak-like
distributions of TF ChIP sequencing reads, taking advantage of an improved
peak definition in combination with known profile characteristics.")
(license license:gpl2)))