gnu: python-scikit-learn: Patch test non-determinism.

* gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch:
New file.
* gnu/packages/machine-learning.scm (python-scikit-learn)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
This commit is contained in:
Ben Woodcroft 2017-12-14 18:45:21 +10:00
parent 4e0b3583ea
commit 8a6cd65a2a
No known key found for this signature in database
GPG Key ID: 2A6AD9F4AAC20DF6
3 changed files with 29 additions and 1 deletions

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@ -1014,6 +1014,7 @@ dist_patch_DATA = \
%D%/packages/patches/python-parse-too-many-fields.patch \ %D%/packages/patches/python-parse-too-many-fields.patch \
%D%/packages/patches/python2-rdflib-drop-sparqlwrapper.patch \ %D%/packages/patches/python2-rdflib-drop-sparqlwrapper.patch \
%D%/packages/patches/python-statsmodels-fix-tests.patch \ %D%/packages/patches/python-statsmodels-fix-tests.patch \
%D%/packages/patches/python-scikit-learn-fix-test-non-determinism.patch \
%D%/packages/patches/python-configobj-setuptools.patch \ %D%/packages/patches/python-configobj-setuptools.patch \
%D%/packages/patches/python-faker-fix-build-32bit.patch \ %D%/packages/patches/python-faker-fix-build-32bit.patch \
%D%/packages/patches/python-pandas-skip-failing-tests.patch \ %D%/packages/patches/python-pandas-skip-failing-tests.patch \

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@ -621,7 +621,9 @@ computing environments.")
(file-name (string-append name "-" version ".tar.gz")) (file-name (string-append name "-" version ".tar.gz"))
(sha256 (sha256
(base32 (base32
"18n8775kyfwbvcjjjzda9c5sqy4737c0hrmj6qj1ps2jmlqzair9")))) "18n8775kyfwbvcjjjzda9c5sqy4737c0hrmj6qj1ps2jmlqzair9"))
(patches (search-patches
"python-scikit-learn-fix-test-non-determinism.patch"))))
(build-system python-build-system) (build-system python-build-system)
(arguments (arguments
`(#:phases `(#:phases

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@ -0,0 +1,25 @@
This patch stops a test sometimes failing because of non-determinism. See
https://github.com/scikit-learn/scikit-learn/pull/9542
From ff9f6db6e8b59c2b3528c8137ed4054f57c1d7c4 Mon Sep 17 00:00:00 2001
From: Hanmin Qin <qinhanmin2005@sina.com>
Date: Sun, 13 Aug 2017 22:13:49 +0800
Subject: [PATCH] add random_state
---
sklearn/tests/test_kernel_ridge.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/sklearn/tests/test_kernel_ridge.py b/sklearn/tests/test_kernel_ridge.py
index 4750a096ac6..979875870b6 100644
--- a/sklearn/tests/test_kernel_ridge.py
+++ b/sklearn/tests/test_kernel_ridge.py
@@ -10,7 +10,7 @@
from sklearn.utils.testing import assert_array_almost_equal
-X, y = make_regression(n_features=10)
+X, y = make_regression(n_features=10, random_state=0)
Xcsr = sp.csr_matrix(X)
Xcsc = sp.csc_matrix(X)
Y = np.array([y, y]).T