From 8fadbc4bb31cb80d0a6b6a47a7e61615f3e20c0c Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Wed, 6 Mar 2019 16:43:46 +0100 Subject: [PATCH 001/194] gnu: lcov: Update to 1.14. * gnu/packages/code.scm (lcov): Update to 1.14. --- gnu/packages/code.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/code.scm b/gnu/packages/code.scm index 093e36f4a4..09cca5d52e 100644 --- a/gnu/packages/code.scm +++ b/gnu/packages/code.scm @@ -3,7 +3,7 @@ ;;; Copyright © 2015 Andreas Enge ;;; Copyright © 2015, 2018 Ricardo Wurmus ;;; Copyright © 2016, 2017, 2019 Efraim Flashner -;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice +;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice ;;; Copyright © 2017, 2018 Clément Lassieur ;;; Copyright © 2017 Andy Wingo ;;; Copyright © 2018 Fis Trivial @@ -371,14 +371,14 @@ stack traces.") (define-public lcov (package (name "lcov") - (version "1.13") + (version "1.14") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/ltp/Coverage%20Analysis" "/LCOV-" version "/lcov-" version ".tar.gz")) (sha256 (base32 - "08wabnb0gcjqk0qc65a6cgbbmz6b8lvam3p7byh0dk42hj3jr5s4")))) + "06h7ixyznf6vz1qvksjgy5f3q2nw9akf6zx59npf0h3l32cmd68l")))) (build-system gnu-build-system) (arguments '(#:make-flags From bde093c23d53191c673889d7d90c96bb43106b68 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Wed, 6 Mar 2019 16:47:39 +0100 Subject: [PATCH 002/194] gnu: cabextract: Update to 1.9.1. * gnu/packages/compression.scm (cabextract): Update to 1.9.1. --- gnu/packages/compression.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm index 4f4d71e469..8093d15434 100644 --- a/gnu/packages/compression.scm +++ b/gnu/packages/compression.scm @@ -949,13 +949,13 @@ smaller than those produced by @code{Xdelta}.") (package (name "cabextract") (home-page "https://cabextract.org.uk/") - (version "1.9") + (version "1.9.1") (source (origin (method url-fetch) (uri (string-append home-page name "-" version ".tar.gz")) (sha256 (base32 - "1hf4zhjxfdgq9x172r5zfdnafma9q0zf7372syn8hcn7hcypkg0v")) + "19qwhl2r8ip95q4vxzxg2kp4p125hjmc9762sns1dwwf7ikm7hmg")) (modules '((guix build utils))) (snippet '(begin From 393b55d5c7a02b176120c4ec68af8ae884c16ef1 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Wed, 6 Mar 2019 16:47:47 +0100 Subject: [PATCH 003/194] gnu: cabextract: Don't use NAME in source URI. * gnu/packages/compression.scm (cabextract)[source]: Hard-code NAME. --- gnu/packages/compression.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm index 8093d15434..9dbe55695c 100644 --- a/gnu/packages/compression.scm +++ b/gnu/packages/compression.scm @@ -952,7 +952,7 @@ smaller than those produced by @code{Xdelta}.") (version "1.9.1") (source (origin (method url-fetch) - (uri (string-append home-page name "-" version ".tar.gz")) + (uri (string-append home-page "cabextract-" version ".tar.gz")) (sha256 (base32 "19qwhl2r8ip95q4vxzxg2kp4p125hjmc9762sns1dwwf7ikm7hmg")) From d2b38df62eda5b332f8911e1b1591352723631fe Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Wed, 6 Mar 2019 20:51:40 +0200 Subject: [PATCH 004/194] gnu: font-gnu-unifont: Update to 12.0.01. * gnu/packages/fonts.scm (font-gnu-unifont): Update to 12.0.01. --- gnu/packages/fonts.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/fonts.scm b/gnu/packages/fonts.scm index 2b60f80fda..bb8548c1eb 100644 --- a/gnu/packages/fonts.scm +++ b/gnu/packages/fonts.scm @@ -11,7 +11,7 @@ ;;; Copyright © 2016 Jookia <166291@gmail.com> ;;; Copyright © 2016 Eric Bavier ;;; Copyright © 2016 Dmitry Nikolaev -;;; Copyright © 2016, 2017, 2018 Efraim Flashner +;;; Copyright © 2016, 2017, 2018, 2019 Efraim Flashner ;;; Copyright © 2016 Marius Bakke ;;; Copyright © 2016 Toni Reina ;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice @@ -613,7 +613,7 @@ languages, plus Greek and Cyrillic.") (define-public font-gnu-unifont (package (name "font-gnu-unifont") - (version "11.0.03") + (version "12.0.01") (source (origin (method url-fetch) (uri (string-append @@ -621,7 +621,7 @@ languages, plus Greek and Cyrillic.") version ".tar.gz")) (sha256 (base32 - "171zhm52c4rzpn19qcq4n9nyfbcjl38v50zslhvgpjdcmc5jvhav")))) + "059j82z6z4wqyy3261ns0zg2b2vh2wvxxfbsa9hra9xasism49vb")))) (build-system gnu-build-system) (outputs '("out" ; TrueType version "pcf" ; PCF (bitmap) version From 6aa896d82e60a2e45b644b2d485dc5fc6b901c0c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 20:59:02 +0100 Subject: [PATCH 005/194] gnu: Update copyright headers. This is a follow-up to commit 1fe9a36173335b559c695357bc8d884f1d4b144a. * gnu/packages/bioconductor.scm: Update copyright header to account for moved package. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ed950d5687..49765096d9 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1,6 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2018, 2019 Ricardo Wurmus -;;; Copyright © 2017, 2018 Roel Janssen +;;; Copyright © 2016, 2017, 2018, 2019 Ricardo Wurmus +;;; Copyright © 2016, 2017, 2018 Roel Janssen ;;; Copyright © 2018 Tobias Geerinckx-Rice ;;; ;;; This file is part of GNU Guix. From 3d13b448e5e5a4eff7a94ca38ee051206daab96d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 21:05:43 +0100 Subject: [PATCH 006/194] gnu: r-copynumber: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-copynumber): Move from here... * gnu/packages/bioconductor.scm (r-copynumber): ...to here. --- gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 23 ----------------------- 2 files changed, 23 insertions(+), 23 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 49765096d9..bbfe68c5cc 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1204,6 +1204,29 @@ Viewer (SAV) files, access data, and generate QC plots.") sequencing data.") (license license:gpl2+))) +(define-public r-copynumber + (package + (name "r-copynumber") + (version "1.22.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "copynumber" version)) + (sha256 + (base32 + "0ipwj9i5p1bwhg5d80jdjagm02krpj2v0j47qdgw41h8wncdyal3")))) + (build-system r-build-system) + (propagated-inputs + `(("r-s4vectors" ,r-s4vectors) + ("r-iranges" ,r-iranges) + ("r-genomicranges" ,r-genomicranges) + ("r-biocgenerics" ,r-biocgenerics))) + (home-page "https://bioconductor.org/packages/copynumber") + (synopsis "Segmentation of single- and multi-track copy number data") + (description + "This package segments single- and multi-track copy number data by a +penalized least squares regression method.") + (license license:artistic2.0))) + (define-public r-dnacopy (package (name "r-dnacopy") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4481235c78..09d3bf2090 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6347,29 +6347,6 @@ between two different types of motif instances using as much relevant information as possible.") (license (list license:gpl2+ license:gpl3+)))) -(define-public r-copynumber - (package - (name "r-copynumber") - (version "1.22.0") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "copynumber" version)) - (sha256 - (base32 - "0ipwj9i5p1bwhg5d80jdjagm02krpj2v0j47qdgw41h8wncdyal3")))) - (build-system r-build-system) - (propagated-inputs - `(("r-s4vectors" ,r-s4vectors) - ("r-iranges" ,r-iranges) - ("r-genomicranges" ,r-genomicranges) - ("r-biocgenerics" ,r-biocgenerics))) - (home-page "https://bioconductor.org/packages/copynumber") - (synopsis "Segmentation of single- and multi-track copy number data") - (description - "This package segments single- and multi-track copy number data by a -penalized least squares regression method.") - (license license:artistic2.0))) - (define-public r-geneplotter (package (name "r-geneplotter") From 9f8698ad1c9c80ddff4ec66eef3d262db5212299 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 21:07:24 +0100 Subject: [PATCH 007/194] gnu: Add guile-stis-parser. * gnu/packages/guile-xyz.scm (guile-stis-parser): New variable. --- gnu/packages/guile-xyz.scm | 40 ++++++++++++++++++++++++++++++++++++++ 1 file changed, 40 insertions(+) diff --git a/gnu/packages/guile-xyz.scm b/gnu/packages/guile-xyz.scm index 856f02f793..1ef523d9ce 100644 --- a/gnu/packages/guile-xyz.scm +++ b/gnu/packages/guile-xyz.scm @@ -2057,3 +2057,43 @@ for people new to Emacs. Features include: CUA mode, Geiser, tool bar icons to evaluate Guile buffers, support for Guile's very own picture language, code completion, a simple mode line, etc.") (license license:gpl3+)))) + +(define-public guile-stis-parser + (let ((commit "6e85d37ffc333b722f4413a6c648263701eb75bd") + (revision "1")) + (package + (name "guile-stis-parser") + (version (git-version "0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://gitlab.com/tampe/stis-parser") + (commit commit))) + (sha256 + (base32 + "0v4hvq7rlpbra1ni73lf8k6sdmjlflr50yi3p1f24g85h77pc7c0")))) + (build-system gnu-build-system) + (arguments + `(#:parallel-build? #f ; not supported + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'chdir + (lambda _ (chdir "modules") #t)) + (add-after 'chdir 'delete-broken-symlink + (lambda _ + (delete-file "parser/stis-parser/lang/.#calc.scm") + #t))))) + (inputs + `(("guile" ,guile-2.2))) + (native-inputs + `(("autoconf" ,autoconf) + ("automake" ,automake) + ("pkg-config" ,pkg-config))) + (home-page "https://gitlab.com/tampe/stis-parser") + (synopsis "Parser combinator framework") + (description + "This package provides a functional parser combinator library that +supports backtracking and a small logical framework. The idea is to build up +chunks that are memoized and there is no clear scanner/parser separation, +chunks can be expressions as well as simple tokens.") + (license license:lgpl2.0+)))) From bfb93b4889a2352f47df56dedf0a10cd2dfc441c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 21:13:38 +0100 Subject: [PATCH 008/194] gnu: r-geneplotter: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-geneplotter): Move from here... * gnu/packages/bioconductor.scm (r-geneplotter): ...to here. --- gnu/packages/bioconductor.scm | 27 ++++++++++++++++++++++++++- gnu/packages/bioinformatics.scm | 25 ------------------------- 2 files changed, 26 insertions(+), 26 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index bbfe68c5cc..f3ea87cdb1 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1,7 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2016, 2017, 2018, 2019 Ricardo Wurmus ;;; Copyright © 2016, 2017, 2018 Roel Janssen -;;; Copyright © 2018 Tobias Geerinckx-Rice +;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice ;;; ;;; This file is part of GNU Guix. ;;; @@ -349,6 +349,31 @@ customizable permutation tests to assess the association between genomic region sets and other genomic features.") (license license:artistic2.0))) +(define-public r-geneplotter + (package + (name "r-geneplotter") + (version "1.60.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "geneplotter" version)) + (sha256 + (base32 + "10khr0pznxf3m0f5gzck9ymljrwcv3vamfmpskd51yjh36lhllqz")))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotate" ,r-annotate) + ("r-annotationdbi" ,r-annotationdbi) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-lattice" ,r-lattice) + ("r-rcolorbrewer" ,r-rcolorbrewer))) + (home-page "https://bioconductor.org/packages/geneplotter") + (synopsis "Graphics functions for genomic data") + (description + "This package provides functions for plotting genomic data.") + (license license:artistic2.0))) + (define-public r-diffbind (package (name "r-diffbind") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 09d3bf2090..73d6ecf135 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6347,31 +6347,6 @@ between two different types of motif instances using as much relevant information as possible.") (license (list license:gpl2+ license:gpl3+)))) -(define-public r-geneplotter - (package - (name "r-geneplotter") - (version "1.60.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "geneplotter" version)) - (sha256 - (base32 - "10khr0pznxf3m0f5gzck9ymljrwcv3vamfmpskd51yjh36lhllqz")))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotate" ,r-annotate) - ("r-annotationdbi" ,r-annotationdbi) - ("r-biobase" ,r-biobase) - ("r-biocgenerics" ,r-biocgenerics) - ("r-lattice" ,r-lattice) - ("r-rcolorbrewer" ,r-rcolorbrewer))) - (home-page "https://bioconductor.org/packages/geneplotter") - (synopsis "Graphics functions for genomic data") - (description - "This package provides functions for plotting genomic data.") - (license license:artistic2.0))) - (define-public r-genefilter (package (name "r-genefilter") From 66e35ce63b346f5f13b2d48a76bc0da14637c58c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 21:16:33 +0100 Subject: [PATCH 009/194] gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): Move from here... * gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): ...to here. --- gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 32 -------------------------------- 2 files changed, 32 insertions(+), 32 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index f3ea87cdb1..316be1ca42 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -224,6 +224,38 @@ based on mapping using Entrez Gene identifiers.") genomes and gene ID formats, largely based on the UCSC table browser.") (license license:lgpl2.0+))) +(define-public r-txdb-hsapiens-ucsc-hg19-knowngene + (package + (name "r-txdb-hsapiens-ucsc-hg19-knowngene") + (version "3.2.2") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://bioconductor.org/packages/" + "release/data/annotation/src/contrib" + "/TxDb.Hsapiens.UCSC.hg19.knownGene_" + version ".tar.gz")) + (sha256 + (base32 + "1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86")))) + (properties + `((upstream-name . "TxDb.Hsapiens.UCSC.hg19.knownGene"))) + (build-system r-build-system) + ;; As this package provides little more than a very large data file it + ;; doesn't make sense to build substitutes. + (arguments `(#:substitutable? #f)) + (propagated-inputs + `(("r-genomicfeatures" ,r-genomicfeatures))) + (home-page + "https://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg19.knownGene/") + (synopsis "Annotation package for human genome in TxDb format") + (description + "This package provides an annotation database of Homo sapiens genome +data. It is derived from the UCSC hg19 genome and based on the \"knownGene\" +track. The database is exposed as a @code{TxDb} object.") + (license license:artistic2.0))) + (define-public r-txdb-mmusculus-ucsc-mm9-knowngene (package (name "r-txdb-mmusculus-ucsc-mm9-knowngene") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 73d6ecf135..82f45b30c3 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6709,38 +6709,6 @@ annotation infrastructure.") "This package provides a pipeline for the analysis of GRO-seq data.") (license license:gpl3+))) -(define-public r-txdb-hsapiens-ucsc-hg19-knowngene - (package - (name "r-txdb-hsapiens-ucsc-hg19-knowngene") - (version "3.2.2") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://bioconductor.org/packages/" - "release/data/annotation/src/contrib" - "/TxDb.Hsapiens.UCSC.hg19.knownGene_" - version ".tar.gz")) - (sha256 - (base32 - "1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86")))) - (properties - `((upstream-name . "TxDb.Hsapiens.UCSC.hg19.knownGene"))) - (build-system r-build-system) - ;; As this package provides little more than a very large data file it - ;; doesn't make sense to build substitutes. - (arguments `(#:substitutable? #f)) - (propagated-inputs - `(("r-genomicfeatures" ,r-genomicfeatures))) - (home-page - "https://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg19.knownGene/") - (synopsis "Annotation package for human genome in TxDb format") - (description - "This package provides an annotation database of Homo sapiens genome -data. It is derived from the UCSC hg19 genome and based on the \"knownGene\" -track. The database is exposed as a @code{TxDb} object.") - (license license:artistic2.0))) - (define-public r-sparql (package (name "r-sparql") From 40a650571155933794523279adc435fd7d84fd2a Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 21:19:21 +0100 Subject: [PATCH 010/194] gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-1000genomes-hs37d5): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5): ...to here. --- gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 31 ------------------------------- 2 files changed, 31 insertions(+), 31 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 316be1ca42..c1c987e82d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -100,6 +100,37 @@ RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.") (license license:artistic2.0))) +(define-public r-bsgenome-hsapiens-1000genomes-hs37d5 + (package + (name "r-bsgenome-hsapiens-1000genomes-hs37d5") + (version "0.99.1") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "BSgenome.Hsapiens.1000genomes.hs37d5_" + version ".tar.gz")) + (sha256 + (base32 + "1cg0g5fqmsvwyw2p9hp2yy4ilk21jkbbrnpgqvb5c36ihjwvc7sr")))) + (properties + `((upstream-name . "BSgenome.Hsapiens.1000genomes.hs37d5"))) + (build-system r-build-system) + ;; As this package provides little more than a very large data file it + ;; doesn't make sense to build substitutes. + (arguments `(#:substitutable? #f)) + (propagated-inputs + `(("r-bsgenome" ,r-bsgenome))) + (home-page + "https://www.bioconductor.org/packages/BSgenome.Hsapiens.1000genomes.hs37d5/") + (synopsis "Full genome sequences for Homo sapiens") + (description + "This package provides full genome sequences for Homo sapiens from +1000genomes phase2 reference genome sequence (hs37d5), based on NCBI GRCh37.") + (license license:artistic2.0))) + (define-public r-bsgenome-hsapiens-ucsc-hg19-masked (package (name "r-bsgenome-hsapiens-ucsc-hg19-masked") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 82f45b30c3..1e0abb3f42 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7859,37 +7859,6 @@ dependencies between GO terms can be implemented and applied.") genome data packages and support for efficient SNP representation.") (license license:artistic2.0))) -(define-public r-bsgenome-hsapiens-1000genomes-hs37d5 - (package - (name "r-bsgenome-hsapiens-1000genomes-hs37d5") - (version "0.99.1") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "BSgenome.Hsapiens.1000genomes.hs37d5_" - version ".tar.gz")) - (sha256 - (base32 - "1cg0g5fqmsvwyw2p9hp2yy4ilk21jkbbrnpgqvb5c36ihjwvc7sr")))) - (properties - `((upstream-name . "BSgenome.Hsapiens.1000genomes.hs37d5"))) - (build-system r-build-system) - ;; As this package provides little more than a very large data file it - ;; doesn't make sense to build substitutes. - (arguments `(#:substitutable? #f)) - (propagated-inputs - `(("r-bsgenome" ,r-bsgenome))) - (home-page - "https://www.bioconductor.org/packages/BSgenome.Hsapiens.1000genomes.hs37d5/") - (synopsis "Full genome sequences for Homo sapiens") - (description - "This package provides full genome sequences for Homo sapiens from -1000genomes phase2 reference genome sequence (hs37d5), based on NCBI GRCh37.") - (license license:artistic2.0))) - (define-public r-impute (package (name "r-impute") From fe0b76e2159589227c2b4354897d69234a1192dc Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 21:23:42 +0100 Subject: [PATCH 011/194] gnu: r-bsgenome-hsapiens-ucsc-hg19: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19): ...to here. --- gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 31 ------------------------------- 2 files changed, 31 insertions(+), 31 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index c1c987e82d..d66dec6ba7 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -227,6 +227,37 @@ default." ) based on mapping using Entrez Gene identifiers.") (license license:artistic2.0))) +(define-public r-bsgenome-hsapiens-ucsc-hg19 + (package + (name "r-bsgenome-hsapiens-ucsc-hg19") + (version "1.4.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "BSgenome.Hsapiens.UCSC.hg19_" + version ".tar.gz")) + (sha256 + (base32 + "1y0nqpk8cw5a34sd9hmin3z4v7iqm6hf6l22cl81vlbxqbjibxc8")))) + (properties + `((upstream-name . "BSgenome.Hsapiens.UCSC.hg19"))) + (build-system r-build-system) + ;; As this package provides little more than a very large data file it + ;; doesn't make sense to build substitutes. + (arguments `(#:substitutable? #f)) + (propagated-inputs + `(("r-bsgenome" ,r-bsgenome))) + (home-page + "https://www.bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/") + (synopsis "Full genome sequences for Homo sapiens") + (description + "This package provides full genome sequences for Homo sapiens as provided +by UCSC (hg19, February 2009) and stored in Biostrings objects.") + (license license:artistic2.0))) + (define-public r-genelendatabase (package (name "r-genelendatabase") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 1e0abb3f42..67eee4024e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8105,37 +8105,6 @@ plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).") (license license:lgpl2.0+))) -(define-public r-bsgenome-hsapiens-ucsc-hg19 - (package - (name "r-bsgenome-hsapiens-ucsc-hg19") - (version "1.4.0") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "BSgenome.Hsapiens.UCSC.hg19_" - version ".tar.gz")) - (sha256 - (base32 - "1y0nqpk8cw5a34sd9hmin3z4v7iqm6hf6l22cl81vlbxqbjibxc8")))) - (properties - `((upstream-name . "BSgenome.Hsapiens.UCSC.hg19"))) - (build-system r-build-system) - ;; As this package provides little more than a very large data file it - ;; doesn't make sense to build substitutes. - (arguments `(#:substitutable? #f)) - (propagated-inputs - `(("r-bsgenome" ,r-bsgenome))) - (home-page - "https://www.bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/") - (synopsis "Full genome sequences for Homo sapiens") - (description - "This package provides full genome sequences for Homo sapiens as provided -by UCSC (hg19, February 2009) and stored in Biostrings objects.") - (license license:artistic2.0))) - (define-public r-bsgenome-mmusculus-ucsc-mm9 (package (name "r-bsgenome-mmusculus-ucsc-mm9") From 5acb9052cf7f57aecebfa1e719022efad52322b0 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 21:25:18 +0100 Subject: [PATCH 012/194] gnu: r-bsgenome-mmusculus-ucsc-mm9: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm9): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9): ...to here. --- gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 31 ------------------------------- 2 files changed, 31 insertions(+), 31 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index d66dec6ba7..6a58391765 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -166,6 +166,37 @@ Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.") (license license:artistic2.0))) +(define-public r-bsgenome-mmusculus-ucsc-mm9 + (package + (name "r-bsgenome-mmusculus-ucsc-mm9") + (version "1.4.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "BSgenome.Mmusculus.UCSC.mm9_" + version ".tar.gz")) + (sha256 + (base32 + "1birqw30g2azimxpnjfzmkphan7x131yy8b9h85lfz5fjdg7841i")))) + (properties + `((upstream-name . "BSgenome.Mmusculus.UCSC.mm9"))) + (build-system r-build-system) + ;; As this package provides little more than a very large data file it + ;; doesn't make sense to build substitutes. + (arguments `(#:substitutable? #f)) + (propagated-inputs + `(("r-bsgenome" ,r-bsgenome))) + (home-page + "https://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm9/") + (synopsis "Full genome sequences for Mouse") + (description + "This package provides full genome sequences for Mus musculus (Mouse) as +provided by UCSC (mm9, July 2007) and stored in Biostrings objects.") + (license license:artistic2.0))) + (define-public r-bsgenome-mmusculus-ucsc-mm9-masked (package (name "r-bsgenome-mmusculus-ucsc-mm9-masked") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 67eee4024e..51bb3bb9b7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8105,37 +8105,6 @@ plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).") (license license:lgpl2.0+))) -(define-public r-bsgenome-mmusculus-ucsc-mm9 - (package - (name "r-bsgenome-mmusculus-ucsc-mm9") - (version "1.4.0") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "BSgenome.Mmusculus.UCSC.mm9_" - version ".tar.gz")) - (sha256 - (base32 - "1birqw30g2azimxpnjfzmkphan7x131yy8b9h85lfz5fjdg7841i")))) - (properties - `((upstream-name . "BSgenome.Mmusculus.UCSC.mm9"))) - (build-system r-build-system) - ;; As this package provides little more than a very large data file it - ;; doesn't make sense to build substitutes. - (arguments `(#:substitutable? #f)) - (propagated-inputs - `(("r-bsgenome" ,r-bsgenome))) - (home-page - "https://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm9/") - (synopsis "Full genome sequences for Mouse") - (description - "This package provides full genome sequences for Mus musculus (Mouse) as -provided by UCSC (mm9, July 2007) and stored in Biostrings objects.") - (license license:artistic2.0))) - (define-public r-bsgenome-mmusculus-ucsc-mm10 (package (name "r-bsgenome-mmusculus-ucsc-mm10") From c3adc8305465318e3d83f2a881ab54076e288a0a Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 21:26:54 +0100 Subject: [PATCH 013/194] gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm10): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): ...to here. --- gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 32 -------------------------------- 2 files changed, 32 insertions(+), 32 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 6a58391765..936f521245 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -232,6 +232,38 @@ Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default." ) (license license:artistic2.0))) +(define-public r-bsgenome-mmusculus-ucsc-mm10 + (package + (name "r-bsgenome-mmusculus-ucsc-mm10") + (version "1.4.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "BSgenome.Mmusculus.UCSC.mm10_" + version ".tar.gz")) + (sha256 + (base32 + "12s0nm2na9brjad4rn9l7d3db2aj8qa1xvz0y1k7gk08wayb6bkf")))) + (properties + `((upstream-name . "BSgenome.Mmusculus.UCSC.mm10"))) + (build-system r-build-system) + ;; As this package provides little more than a very large data file it + ;; doesn't make sense to build substitutes. + (arguments `(#:substitutable? #f)) + (propagated-inputs + `(("r-bsgenome" ,r-bsgenome))) + (home-page + "https://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/") + (synopsis "Full genome sequences for Mouse") + (description + "This package provides full genome sequences for Mus +musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored +in Biostrings objects.") + (license license:artistic2.0))) + (define-public r-org-dr-eg-db (package (name "r-org-dr-eg-db") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 51bb3bb9b7..ef65dd9361 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8105,38 +8105,6 @@ plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).") (license license:lgpl2.0+))) -(define-public r-bsgenome-mmusculus-ucsc-mm10 - (package - (name "r-bsgenome-mmusculus-ucsc-mm10") - (version "1.4.0") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "BSgenome.Mmusculus.UCSC.mm10_" - version ".tar.gz")) - (sha256 - (base32 - "12s0nm2na9brjad4rn9l7d3db2aj8qa1xvz0y1k7gk08wayb6bkf")))) - (properties - `((upstream-name . "BSgenome.Mmusculus.UCSC.mm10"))) - (build-system r-build-system) - ;; As this package provides little more than a very large data file it - ;; doesn't make sense to build substitutes. - (arguments `(#:substitutable? #f)) - (propagated-inputs - `(("r-bsgenome" ,r-bsgenome))) - (home-page - "https://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/") - (synopsis "Full genome sequences for Mouse") - (description - "This package provides full genome sequences for Mus -musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored -in Biostrings objects.") - (license license:artistic2.0))) - (define-public r-txdb-mmusculus-ucsc-mm10-knowngene (package (name "r-txdb-mmusculus-ucsc-mm10-knowngene") From b7d93cf5087642103ae4a1f19ae38876d46c2b6c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 21:29:20 +0100 Subject: [PATCH 014/194] gnu: r-bsgenome-celegans-ucsc-ce6: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce6): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6): ...to here. --- gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 32 -------------------------------- 2 files changed, 32 insertions(+), 32 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 936f521245..24504d0514 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -33,6 +33,38 @@ #:use-module (gnu packages statistics) #:use-module (gnu packages web)) +(define-public r-bsgenome-celegans-ucsc-ce6 + (package + (name "r-bsgenome-celegans-ucsc-ce6") + (version "1.4.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "BSgenome.Celegans.UCSC.ce6_" + version ".tar.gz")) + (sha256 + (base32 + "0mqzb353xv2c3m3vkb315dkmnxkgczp7ndnknyhpgjlybyf715v9")))) + (properties + `((upstream-name . "BSgenome.Celegans.UCSC.ce6"))) + (build-system r-build-system) + ;; As this package provides little more than a very large data file it + ;; doesn't make sense to build substitutes. + (arguments `(#:substitutable? #f)) + (propagated-inputs + `(("r-bsgenome" ,r-bsgenome))) + (home-page + "https://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce6/") + (synopsis "Full genome sequences for Worm") + (description + "This package provides full genome sequences for Caenorhabditis +elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings +objects.") + (license license:artistic2.0))) + (define-public r-bsgenome-dmelanogaster-ucsc-dm6 (package (name "r-bsgenome-dmelanogaster-ucsc-dm6") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ef65dd9361..efe4c9b2f6 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8140,38 +8140,6 @@ the TxDb object of Mouse data as provided by UCSC (mm10, December 2011) based on the knownGene track.") (license license:artistic2.0))) -(define-public r-bsgenome-celegans-ucsc-ce6 - (package - (name "r-bsgenome-celegans-ucsc-ce6") - (version "1.4.0") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "BSgenome.Celegans.UCSC.ce6_" - version ".tar.gz")) - (sha256 - (base32 - "0mqzb353xv2c3m3vkb315dkmnxkgczp7ndnknyhpgjlybyf715v9")))) - (properties - `((upstream-name . "BSgenome.Celegans.UCSC.ce6"))) - (build-system r-build-system) - ;; As this package provides little more than a very large data file it - ;; doesn't make sense to build substitutes. - (arguments `(#:substitutable? #f)) - (propagated-inputs - `(("r-bsgenome" ,r-bsgenome))) - (home-page - "https://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce6/") - (synopsis "Full genome sequences for Worm") - (description - "This package provides full genome sequences for Caenorhabditis -elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings -objects.") - (license license:artistic2.0))) - (define-public r-bsgenome-celegans-ucsc-ce10 (package (name "r-bsgenome-celegans-ucsc-ce10") From 0c792ffbd1fe52533676a501bfc54c2a33a69351 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 21:30:30 +0100 Subject: [PATCH 015/194] gnu: r-bsgenome-celegans-ucsc-ce10: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10): ...to here. --- gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 32 -------------------------------- 2 files changed, 32 insertions(+), 32 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 24504d0514..44864c2c6d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -65,6 +65,38 @@ elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings objects.") (license license:artistic2.0))) +(define-public r-bsgenome-celegans-ucsc-ce10 + (package + (name "r-bsgenome-celegans-ucsc-ce10") + (version "1.4.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "BSgenome.Celegans.UCSC.ce10_" + version ".tar.gz")) + (sha256 + (base32 + "1zaym97jk4npxk14ifvwz2rvhm4zx9xgs33r9vvx9rlynp0gydrk")))) + (properties + `((upstream-name . "BSgenome.Celegans.UCSC.ce10"))) + (build-system r-build-system) + ;; As this package provides little more than a very large data file it + ;; doesn't make sense to build substitutes. + (arguments `(#:substitutable? #f)) + (propagated-inputs + `(("r-bsgenome" ,r-bsgenome))) + (home-page + "https://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce10/") + (synopsis "Full genome sequences for Worm") + (description + "This package provides full genome sequences for Caenorhabditis +elegans (Worm) as provided by UCSC (ce10, Oct 2010) and stored in Biostrings +objects.") + (license license:artistic2.0))) + (define-public r-bsgenome-dmelanogaster-ucsc-dm6 (package (name "r-bsgenome-dmelanogaster-ucsc-dm6") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index efe4c9b2f6..7243ee1729 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8140,38 +8140,6 @@ the TxDb object of Mouse data as provided by UCSC (mm10, December 2011) based on the knownGene track.") (license license:artistic2.0))) -(define-public r-bsgenome-celegans-ucsc-ce10 - (package - (name "r-bsgenome-celegans-ucsc-ce10") - (version "1.4.0") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "BSgenome.Celegans.UCSC.ce10_" - version ".tar.gz")) - (sha256 - (base32 - "1zaym97jk4npxk14ifvwz2rvhm4zx9xgs33r9vvx9rlynp0gydrk")))) - (properties - `((upstream-name . "BSgenome.Celegans.UCSC.ce10"))) - (build-system r-build-system) - ;; As this package provides little more than a very large data file it - ;; doesn't make sense to build substitutes. - (arguments `(#:substitutable? #f)) - (propagated-inputs - `(("r-bsgenome" ,r-bsgenome))) - (home-page - "https://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce10/") - (synopsis "Full genome sequences for Worm") - (description - "This package provides full genome sequences for Caenorhabditis -elegans (Worm) as provided by UCSC (ce10, Oct 2010) and stored in Biostrings -objects.") - (license license:artistic2.0))) - (define-public r-bsgenome-dmelanogaster-ucsc-dm3 (package (name "r-bsgenome-dmelanogaster-ucsc-dm3") From 13dabd6947c61789c231de96be1fb7a8116db0cd Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 21:31:41 +0100 Subject: [PATCH 016/194] gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-bsgenome-dmelanogaster-ucsc-dm3): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3): ...to here. --- gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 32 -------------------------------- 2 files changed, 32 insertions(+), 32 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 44864c2c6d..1bb1871fd0 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -129,6 +129,38 @@ melanogaster (Fly) as provided by UCSC (dm6) and stored in Biostrings objects.") (license license:artistic2.0))) +(define-public r-bsgenome-dmelanogaster-ucsc-dm3 + (package + (name "r-bsgenome-dmelanogaster-ucsc-dm3") + (version "1.4.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "BSgenome.Dmelanogaster.UCSC.dm3_" + version ".tar.gz")) + (sha256 + (base32 + "19bm3lkhhkag3gnwp419211fh0cnr0x6fa0r1lr0ycwrikxdxsv8")))) + (properties + `((upstream-name . "BSgenome.Dmelanogaster.UCSC.dm3"))) + (build-system r-build-system) + ;; As this package provides little more than a very large data file it + ;; doesn't make sense to build substitutes. + (arguments `(#:substitutable? #f)) + (propagated-inputs + `(("r-bsgenome" ,r-bsgenome))) + (home-page + "https://www.bioconductor.org/packages/BSgenome.Dmelanogaster.UCSC.dm3/") + (synopsis "Full genome sequences for Fly") + (description + "This package provides full genome sequences for Drosophila +melanogaster (Fly) as provided by UCSC (dm3, April 2006) and stored in +Biostrings objects.") + (license license:artistic2.0))) + (define-public r-bsgenome-dmelanogaster-ucsc-dm3-masked (package (name "r-bsgenome-dmelanogaster-ucsc-dm3-masked") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7243ee1729..d45dedb6c9 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8140,38 +8140,6 @@ the TxDb object of Mouse data as provided by UCSC (mm10, December 2011) based on the knownGene track.") (license license:artistic2.0))) -(define-public r-bsgenome-dmelanogaster-ucsc-dm3 - (package - (name "r-bsgenome-dmelanogaster-ucsc-dm3") - (version "1.4.0") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "BSgenome.Dmelanogaster.UCSC.dm3_" - version ".tar.gz")) - (sha256 - (base32 - "19bm3lkhhkag3gnwp419211fh0cnr0x6fa0r1lr0ycwrikxdxsv8")))) - (properties - `((upstream-name . "BSgenome.Dmelanogaster.UCSC.dm3"))) - (build-system r-build-system) - ;; As this package provides little more than a very large data file it - ;; doesn't make sense to build substitutes. - (arguments `(#:substitutable? #f)) - (propagated-inputs - `(("r-bsgenome" ,r-bsgenome))) - (home-page - "https://www.bioconductor.org/packages/BSgenome.Dmelanogaster.UCSC.dm3/") - (synopsis "Full genome sequences for Fly") - (description - "This package provides full genome sequences for Drosophila -melanogaster (Fly) as provided by UCSC (dm3, April 2006) and stored in -Biostrings objects.") - (license license:artistic2.0))) - (define-public r-motifrg (package (name "r-motifrg") From 7bc5d1b0e1f1265028f221a51d7ee1c526132f65 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 21:33:17 +0100 Subject: [PATCH 017/194] gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Move from here... * gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): ...to here. --- gnu/packages/bioconductor.scm | 35 +++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 35 --------------------------------- 2 files changed, 35 insertions(+), 35 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1bb1871fd0..a4e436e61d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -507,6 +507,41 @@ is derived from the UCSC mm9 genome and based on the \"knownGene\" track. The database is exposed as a @code{TxDb} object.") (license license:artistic2.0))) +(define-public r-txdb-mmusculus-ucsc-mm10-knowngene + (package + (name "r-txdb-mmusculus-ucsc-mm10-knowngene") + (version "3.4.4") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "TxDb.Mmusculus.UCSC.mm10.knownGene_" + version ".tar.gz")) + (sha256 + (base32 + "01lgxc1fx5nhlpbwjd5zqghkkbmh6axd98ikx4b0spv0jdg6gf39")))) + (properties + `((upstream-name . "TxDb.Mmusculus.UCSC.mm10.knownGene"))) + (build-system r-build-system) + ;; As this package provides little more than a very large data file it + ;; doesn't make sense to build substitutes. + (arguments `(#:substitutable? #f)) + (propagated-inputs + `(("r-bsgenome" ,r-bsgenome) + ("r-genomicfeatures" ,r-genomicfeatures) + ("r-annotationdbi" ,r-annotationdbi))) + (home-page + "https://bioconductor.org/packages/TxDb.Mmusculus.UCSC.mm10.knownGene/") + (synopsis "Annotation package for TxDb knownGene object(s) for Mouse") + (description + "This package loads a TxDb object, which is an R interface to +prefabricated databases contained in this package. This package provides +the TxDb object of Mouse data as provided by UCSC (mm10, December 2011) +based on the knownGene track.") + (license license:artistic2.0))) + (define-public r-biocgenerics (package diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d45dedb6c9..b9973ba81f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8105,41 +8105,6 @@ plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).") (license license:lgpl2.0+))) -(define-public r-txdb-mmusculus-ucsc-mm10-knowngene - (package - (name "r-txdb-mmusculus-ucsc-mm10-knowngene") - (version "3.4.4") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "TxDb.Mmusculus.UCSC.mm10.knownGene_" - version ".tar.gz")) - (sha256 - (base32 - "01lgxc1fx5nhlpbwjd5zqghkkbmh6axd98ikx4b0spv0jdg6gf39")))) - (properties - `((upstream-name . "TxDb.Mmusculus.UCSC.mm10.knownGene"))) - (build-system r-build-system) - ;; As this package provides little more than a very large data file it - ;; doesn't make sense to build substitutes. - (arguments `(#:substitutable? #f)) - (propagated-inputs - `(("r-bsgenome" ,r-bsgenome) - ("r-genomicfeatures" ,r-genomicfeatures) - ("r-annotationdbi" ,r-annotationdbi))) - (home-page - "https://bioconductor.org/packages/TxDb.Mmusculus.UCSC.mm10.knownGene/") - (synopsis "Annotation package for TxDb knownGene object(s) for Mouse") - (description - "This package loads a TxDb object, which is an R interface to -prefabricated databases contained in this package. This package provides -the TxDb object of Mouse data as provided by UCSC (mm10, December 2011) -based on the knownGene track.") - (license license:artistic2.0))) - (define-public r-motifrg (package (name "r-motifrg") From 3a08940e1a38d1f15630b6ad6678b1a79d70049d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 21:35:20 +0100 Subject: [PATCH 018/194] gnu: r-org-ce-eg-db: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Move from here... * gnu/packages/bioconductor.scm (r-org-ce-eg-db): ...to here. --- gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 26 -------------------------- 2 files changed, 26 insertions(+), 26 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a4e436e61d..a55439b94e 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -360,6 +360,32 @@ musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored in Biostrings objects.") (license license:artistic2.0))) +(define-public r-org-ce-eg-db + (package + (name "r-org-ce-eg-db") + (version "3.7.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "org.Ce.eg.db_" version ".tar.gz")) + (sha256 + (base32 + "1w5br1ss4ha8wv4v2saj7cmbjc2jw0dyj2f2y269l078z31wcnaz")))) + (properties + `((upstream-name . "org.Ce.eg.db"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi))) + (home-page "https://www.bioconductor.org/packages/org.Ce.eg.db/") + (synopsis "Genome wide annotation for Worm") + (description + "This package provides mappings from Entrez gene identifiers to various +annotations for the genome of the model worm Caenorhabditis elegans.") + (license license:artistic2.0))) + (define-public r-org-dr-eg-db (package (name "r-org-dr-eg-db") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b9973ba81f..9285d1889d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8006,32 +8006,6 @@ downloaded from Encode.") on mapping using Entrez Gene identifiers.") (license license:artistic2.0))) -(define-public r-org-ce-eg-db - (package - (name "r-org-ce-eg-db") - (version "3.7.0") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "org.Ce.eg.db_" version ".tar.gz")) - (sha256 - (base32 - "1w5br1ss4ha8wv4v2saj7cmbjc2jw0dyj2f2y269l078z31wcnaz")))) - (properties - `((upstream-name . "org.Ce.eg.db"))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotationdbi" ,r-annotationdbi))) - (home-page "https://www.bioconductor.org/packages/org.Ce.eg.db/") - (synopsis "Genome wide annotation for Worm") - (description - "This package provides mappings from Entrez gene identifiers to various -annotations for the genome of the model worm Caenorhabditis elegans.") - (license license:artistic2.0))) - (define-public r-org-dm-eg-db (package (name "r-org-dm-eg-db") From f8780e96ff9c4d1439f679aff0df559d97d673dc Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 21:41:48 +0100 Subject: [PATCH 019/194] gnu: r-org-dm-eg-db: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Move from here... * gnu/packages/bioconductor.scm (r-org-dm-eg-db): ...to here. --- gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 26 -------------------------- 2 files changed, 26 insertions(+), 26 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a55439b94e..f08e1a87c4 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -386,6 +386,32 @@ in Biostrings objects.") annotations for the genome of the model worm Caenorhabditis elegans.") (license license:artistic2.0))) +(define-public r-org-dm-eg-db + (package + (name "r-org-dm-eg-db") + (version "3.7.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "org.Dm.eg.db_" version ".tar.gz")) + (sha256 + (base32 + "1pqjrzlyg72bjpy8zsxvaglc7jsv176bnyi87xdajmkvsgxpm7b3")))) + (properties + `((upstream-name . "org.Dm.eg.db"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi))) + (home-page "https://www.bioconductor.org/packages/org.Dm.eg.db/") + (synopsis "Genome wide annotation for Fly") + (description + "This package provides mappings from Entrez gene identifiers to various +annotations for the genome of the model fruit fly Drosophila melanogaster.") + (license license:artistic2.0))) + (define-public r-org-dr-eg-db (package (name "r-org-dr-eg-db") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9285d1889d..0fffbf82d0 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8006,32 +8006,6 @@ downloaded from Encode.") on mapping using Entrez Gene identifiers.") (license license:artistic2.0))) -(define-public r-org-dm-eg-db - (package - (name "r-org-dm-eg-db") - (version "3.7.0") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "org.Dm.eg.db_" version ".tar.gz")) - (sha256 - (base32 - "1pqjrzlyg72bjpy8zsxvaglc7jsv176bnyi87xdajmkvsgxpm7b3")))) - (properties - `((upstream-name . "org.Dm.eg.db"))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotationdbi" ,r-annotationdbi))) - (home-page "https://www.bioconductor.org/packages/org.Dm.eg.db/") - (synopsis "Genome wide annotation for Fly") - (description - "This package provides mappings from Entrez gene identifiers to various -annotations for the genome of the model fruit fly Drosophila melanogaster.") - (license license:artistic2.0))) - (define-public r-org-mm-eg-db (package (name "r-org-mm-eg-db") From d56df35a259dd1faea7780f4ceff84a9c96c699b Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 21:42:39 +0100 Subject: [PATCH 020/194] gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Move from here... * gnu/packages/bioconductor.scm (r-org-hs-eg-db): ...to here. --- gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 26 -------------------------- 2 files changed, 26 insertions(+), 26 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index f08e1a87c4..7079092335 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -438,6 +438,32 @@ annotations for the genome of the model fruit fly Drosophila melanogaster.") based on mapping using Entrez Gene identifiers.") (license license:artistic2.0))) +(define-public r-org-hs-eg-db + (package + (name "r-org-hs-eg-db") + (version "3.7.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "org.Hs.eg.db_" version ".tar.gz")) + (sha256 + (base32 + "1qxz9l80yg3qdqszs6dsscp7lrpfi1bgd0pxh9j7q34vprzwhdim")))) + (properties + `((upstream-name . "org.Hs.eg.db"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi))) + (home-page "https://www.bioconductor.org/packages/org.Hs.eg.db/") + (synopsis "Genome wide annotation for Human") + (description + "This package contains genome-wide annotations for Human, primarily based +on mapping using Entrez Gene identifiers.") + (license license:artistic2.0))) + (define-public r-bsgenome-hsapiens-ucsc-hg19 (package (name "r-bsgenome-hsapiens-ucsc-hg19") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 0fffbf82d0..b06c8cf1fd 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7980,32 +7980,6 @@ genomation package. Included are Chip Seq, Methylation and Cage data, downloaded from Encode.") (license license:gpl3+))) -(define-public r-org-hs-eg-db - (package - (name "r-org-hs-eg-db") - (version "3.7.0") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "org.Hs.eg.db_" version ".tar.gz")) - (sha256 - (base32 - "1qxz9l80yg3qdqszs6dsscp7lrpfi1bgd0pxh9j7q34vprzwhdim")))) - (properties - `((upstream-name . "org.Hs.eg.db"))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotationdbi" ,r-annotationdbi))) - (home-page "https://www.bioconductor.org/packages/org.Hs.eg.db/") - (synopsis "Genome wide annotation for Human") - (description - "This package contains genome-wide annotations for Human, primarily based -on mapping using Entrez Gene identifiers.") - (license license:artistic2.0))) - (define-public r-org-mm-eg-db (package (name "r-org-mm-eg-db") From 8035819f4c93e1be4a4b7d6d015362461a00865c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 21:43:33 +0100 Subject: [PATCH 021/194] gnu: r-org-mm-eg-db: Move to (gnu packages bioconductor). * gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Move from here... * gnu/packages/bioconductor.scm (r-org-mm-eg-db): ...to here. --- gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 26 -------------------------- 2 files changed, 26 insertions(+), 26 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 7079092335..1d36910637 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -464,6 +464,32 @@ based on mapping using Entrez Gene identifiers.") on mapping using Entrez Gene identifiers.") (license license:artistic2.0))) +(define-public r-org-mm-eg-db + (package + (name "r-org-mm-eg-db") + (version "3.7.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "org.Mm.eg.db_" version ".tar.gz")) + (sha256 + (base32 + "1i3nvrd3wjigf1rmgxq1p5xxc3p8v02h5gwi62s30rkrsyjjfjxx")))) + (properties + `((upstream-name . "org.Mm.eg.db"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi))) + (home-page "https://www.bioconductor.org/packages/org.Mm.eg.db/") + (synopsis "Genome wide annotation for Mouse") + (description + "This package provides mappings from Entrez gene identifiers to various +annotations for the genome of the model mouse Mus musculus.") + (license license:artistic2.0))) + (define-public r-bsgenome-hsapiens-ucsc-hg19 (package (name "r-bsgenome-hsapiens-ucsc-hg19") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b06c8cf1fd..c0e4628a64 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7980,32 +7980,6 @@ genomation package. Included are Chip Seq, Methylation and Cage data, downloaded from Encode.") (license license:gpl3+))) -(define-public r-org-mm-eg-db - (package - (name "r-org-mm-eg-db") - (version "3.7.0") - (source (origin - (method url-fetch) - ;; We cannot use bioconductor-uri here because this tarball is - ;; located under "data/annotation/" instead of "bioc/". - (uri (string-append "https://www.bioconductor.org/packages/" - "release/data/annotation/src/contrib/" - "org.Mm.eg.db_" version ".tar.gz")) - (sha256 - (base32 - "1i3nvrd3wjigf1rmgxq1p5xxc3p8v02h5gwi62s30rkrsyjjfjxx")))) - (properties - `((upstream-name . "org.Mm.eg.db"))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotationdbi" ,r-annotationdbi))) - (home-page "https://www.bioconductor.org/packages/org.Mm.eg.db/") - (synopsis "Genome wide annotation for Mouse") - (description - "This package provides mappings from Entrez gene identifiers to various -annotations for the genome of the model mouse Mus musculus.") - (license license:artistic2.0))) - (define-public r-seqlogo (package (name "r-seqlogo") From 61e265d2946a72382887f8e966f5b644affc37ca Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 21:55:14 +0100 Subject: [PATCH 022/194] gnu: Add multitime. * gnu/packages/benchmark.scm (multitime): New variable. --- gnu/packages/benchmark.scm | 27 ++++++++++++++++++++++++++- 1 file changed, 26 insertions(+), 1 deletion(-) diff --git a/gnu/packages/benchmark.scm b/gnu/packages/benchmark.scm index 43d42b37ad..f4bad73dc7 100644 --- a/gnu/packages/benchmark.scm +++ b/gnu/packages/benchmark.scm @@ -2,7 +2,7 @@ ;;; Copyright © 2016, 2017 Marius Bakke ;;; Copyright © 2017 Dave Love ;;; Copyright © 2018 Tobias Geerinckx-Rice -;;; Copyright © 2018 Ricardo Wurmus +;;; Copyright © 2018, 2019 Ricardo Wurmus ;;; Copyright © 2019 Eric Bavier ;;; ;;; This file is part of GNU Guix. @@ -168,3 +168,28 @@ Efficiency of the MPI implementation. (license license:cpl1.0))) (define-public imb-openmpi (imb openmpi)) + +(define-public multitime + (package + (name "multitime") + (version "1.4") + (source (origin + (method url-fetch) + (uri (string-append "https://tratt.net/laurie/src/" + "multitime/releases/" + "multitime-" version ".tar.gz")) + (sha256 + (base32 + "0iyfsdrbyqa7a4ifrh19l9a48hgv7ld6m0d8yf9bkl12q0qw91fx")))) + (build-system gnu-build-system) + (arguments '(#:tests? #f)) ; there are no tests + (home-page "https://tratt.net/laurie/src/multitime/") + (synopsis "Time command execution over multiple executions") + (description + "The @code{time} utility is a simple and often effective way of measuring +how long a command takes to run (wall time). Unfortunately, running a command +once can give misleading timings. @code{multitime} is, in essence, a simple +extension to @code{time} which runs a command multiple times and prints the +timing means, standard deviations, mins, medians, and maxes having done so. +This can give a much better understanding of the command's performance.") + (license license:expat))) From 11599cff1e0335797deab8f48d1fe8741d7eeb11 Mon Sep 17 00:00:00 2001 From: Vagrant Cascadian Date: Wed, 6 Mar 2019 12:36:44 -0800 Subject: [PATCH 023/194] gnu: diffoscope: Update to 113. * gnu/packages/package-management (diffoscope): Update to 113. Signed-off-by: Ricardo Wurmus --- gnu/packages/package-management.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm index 5a455ac116..dc864a6116 100644 --- a/gnu/packages/package-management.scm +++ b/gnu/packages/package-management.scm @@ -548,13 +548,13 @@ transactions from C or Python.") (define-public diffoscope (package (name "diffoscope") - (version "112") + (version "113") (source (origin (method url-fetch) (uri (pypi-uri name version)) (sha256 (base32 - "00ry8iczfv85qyfxmarxpgdq2h5jfj41z8sl9005brk937a7p2fk")))) + "10wjri6vsqxf2nb7jjhsq38qlpf407b4qrdczrk696aa1v71i44w")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases From 307603dd884f7ee89038cbf329b107fdb85a1119 Mon Sep 17 00:00:00 2001 From: Vagrant Cascadian Date: Wed, 6 Mar 2019 11:54:12 -0800 Subject: [PATCH 024/194] gnu: electrum: Update to 3.3.4. * gnu/packages/finance (electrum): Update to 3.3.4. Signed-off-by: Leo Famulari --- gnu/packages/finance.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm index 112a6eba97..3cd2cb3d42 100644 --- a/gnu/packages/finance.scm +++ b/gnu/packages/finance.scm @@ -336,7 +336,7 @@ do so.") (define-public electrum (package (name "electrum") - (version "3.3.3") + (version "3.3.4") (source (origin (method url-fetch) @@ -345,7 +345,7 @@ do so.") version ".tar.gz")) (sha256 (base32 - "0z2zfhyawrbzs0w1426a2w0d4wsajl34ymj77qmpm41138g2ysf2")) + "0h128wklz5qwx5zqzbd48x46kxjxs12wcna9lhak70y5pj2hw8rg")) (modules '((guix build utils))) (snippet '(begin From 01d8a2a3d938598066981f2033739cead6862824 Mon Sep 17 00:00:00 2001 From: Vagrant Cascadian Date: Wed, 6 Mar 2019 11:55:20 -0800 Subject: [PATCH 025/194] gnu: electron-cash: Update to 3.3.6. * gnu/packages/finance (electron-cash): Update to 3.3.6. Signed-off-by: Leo Famulari --- gnu/packages/finance.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm index 3cd2cb3d42..4eb0d57a36 100644 --- a/gnu/packages/finance.scm +++ b/gnu/packages/finance.scm @@ -391,7 +391,7 @@ other machines/servers. Electrum does not download the Bitcoin blockchain.") (package (inherit electrum) (name "electron-cash") - (version "3.3.5") + (version "3.3.6") (source (origin (method url-fetch) @@ -402,7 +402,7 @@ other machines/servers. Electrum does not download the Bitcoin blockchain.") ".tar.gz")) (sha256 (base32 - "185z3c5j9nvl31ga80hvahx7ghvkgmqgfjrrzw1fbs6p9jxy007w")) + "110apc376wm4yd9ghpffiipwdn8rzyr3z7ncpp2516wbz4mmyhxc")) (modules '((guix build utils))) (snippet '(begin From d935f69b1172854abcc10b348a1e038753741af0 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 22:20:31 +0100 Subject: [PATCH 026/194] gnu: yoshimi: Update to 1.5.10.2. * gnu/packages/music.scm (yoshimi): Update to 1.5.10.2. --- gnu/packages/music.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm index 46af70f9d7..6e6e642fb2 100644 --- a/gnu/packages/music.scm +++ b/gnu/packages/music.scm @@ -2047,7 +2047,7 @@ capabilities, custom envelopes, effects, etc.") (define-public yoshimi (package (name "yoshimi") - (version "1.5.10") + (version "1.5.10.2") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/yoshimi/" @@ -2055,7 +2055,7 @@ capabilities, custom envelopes, effects, etc.") "/yoshimi-" version ".tar.bz2")) (sha256 (base32 - "0mazzn5pc4xnjci3yy1yfsx9l05gkxqzkmscaq1h75jpa7qfsial")))) + "1rr99qkq80s8l2iv3x4ccxan07m15dvmd5s9b10386bfjbwbya01")))) (build-system cmake-build-system) (arguments `(#:tests? #f ; there are no tests From 4b159add6f3f0347727209c3c70b2d5821043a35 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 22:21:12 +0100 Subject: [PATCH 027/194] gnu: padthv1: Update to 0.9.5. * gnu/packages/music.scm (padthv1): Update to 0.9.5. --- gnu/packages/music.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm index 6e6e642fb2..8cbc8c346a 100644 --- a/gnu/packages/music.scm +++ b/gnu/packages/music.scm @@ -1410,7 +1410,7 @@ effects.") (define-public padthv1 (package (name "padthv1") - (version "0.9.2") + (version "0.9.5") (source (origin (method url-fetch) (uri @@ -1418,7 +1418,7 @@ effects.") "/padthv1-" version ".tar.gz")) (sha256 (base32 - "1alfl0l5qdll0w5lwhrwzj5dina1big1zmjg5imi9h06dzhz51xl")))) + "0cd1jfb3ynfrsbz8jwfsbvs5liyddxg4zghrvz931qkkqi117hbh")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; there are no tests From cf6195906cacc04fdabbb7e6208c7743a03025a1 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 22:21:28 +0100 Subject: [PATCH 028/194] gnu: samplv1: Update to 0.9.5. * gnu/packages/music.scm (samplv1): Update to 0.9.5. --- gnu/packages/music.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm index 8cbc8c346a..3fd1892d9c 100644 --- a/gnu/packages/music.scm +++ b/gnu/packages/music.scm @@ -1375,7 +1375,7 @@ effects.") (define-public samplv1 (package (name "samplv1") - (version "0.9.2") + (version "0.9.5") (source (origin (method url-fetch) (uri @@ -1383,7 +1383,7 @@ effects.") "/samplv1-" version ".tar.gz")) (sha256 (base32 - "0rfcp4v971qfhw1hb43hw12wlxmg2q13l0m1h93pyfi5l4mfjkds")))) + "0402rdr46za21w34m7ajzbwiiqcd1h0da3b0ldsr2z5g2mrkzxv8")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; there are no tests From 6ef147bd1dfa27f57a1650e3afa0cac5a2b0295d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 22:24:25 +0100 Subject: [PATCH 029/194] gnu: drumkv1: Update to 0.9.5. * gnu/packages/music.scm (drumkv1): Update to 0.9.5. --- gnu/packages/music.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm index 3fd1892d9c..3f33e43bab 100644 --- a/gnu/packages/music.scm +++ b/gnu/packages/music.scm @@ -1340,7 +1340,7 @@ oscillators and stereo effects.") (define-public drumkv1 (package (name "drumkv1") - (version "0.9.2") + (version "0.9.5") (source (origin (method url-fetch) (uri @@ -1348,7 +1348,7 @@ oscillators and stereo effects.") "/drumkv1-" version ".tar.gz")) (sha256 (base32 - "1z9l43z91d01b9rzam2cj9qmmg6s5y65fjvb83ms4iaa1p0mnwrn")))) + "1azzwqgrrr4zr509sib2jvigfvz5bkwnx82chdadxdwfarai8586")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; there are no tests From fc240e7e05f98dd9df31d7e2ec98af7a977c9ae3 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Wed, 6 Mar 2019 22:24:38 +0100 Subject: [PATCH 030/194] gnu: synthv1: Update to 0.9.5. * gnu/packages/music.scm (synthv1): Update to 0.9.5. --- gnu/packages/music.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm index 3f33e43bab..d2ef0c0375 100644 --- a/gnu/packages/music.scm +++ b/gnu/packages/music.scm @@ -1306,7 +1306,7 @@ users to select LV2 plugins and run them with jalv.") (define-public synthv1 (package (name "synthv1") - (version "0.9.2") + (version "0.9.5") (source (origin (method url-fetch) (uri @@ -1314,7 +1314,7 @@ users to select LV2 plugins and run them with jalv.") "/synthv1-" version ".tar.gz")) (sha256 (base32 - "1r60l286n8y4a4rrlnbc3h7xk4s2pvqykvskls89prxg0lkpz7kl")))) + "1b9w4cml3cmcg09kh852cahas6l9ks8wl3gzp1az8rzxz4229yg1")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; there are no tests From 38e37e73c7a6d3f92b1b1abdfdd660d257bfbb53 Mon Sep 17 00:00:00 2001 From: Julien Lepiller Date: Wed, 6 Mar 2019 23:30:22 +0100 Subject: [PATCH 031/194] nls: Add Swedish translation. * po/guix/sv.po: New file. * po/guix/LINGUAS: Add 'sv'. --- po/guix/LINGUAS | 1 + po/guix/sv.po | 3619 +++++++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 3620 insertions(+) create mode 100644 po/guix/sv.po diff --git a/po/guix/LINGUAS b/po/guix/LINGUAS index d26dd60980..c3f7c4f0e8 100644 --- a/po/guix/LINGUAS +++ b/po/guix/LINGUAS @@ -12,5 +12,6 @@ hu pl pt_BR sr +sv vi zh_CN diff --git a/po/guix/sv.po b/po/guix/sv.po new file mode 100644 index 0000000000..b75269b82d --- /dev/null +++ b/po/guix/sv.po @@ -0,0 +1,3619 @@ +# Swedish translation of the guix package. +# Copyright ǒ 2019 Ludovic Courtès +# This file is distributed under the same license as the guix package. +# Sebastian Rasmussen , 2019. +# +msgid "" +msgstr "" +"Project-Id-Version: guix 0.16.0\n" +"Report-Msgid-Bugs-To: ludo@gnu.org\n" +"POT-Creation-Date: 2018-11-28 15:05+0100\n" +"PO-Revision-Date: 2019-03-05 15:36+0800\n" +"Last-Translator: Sebastian Rasmussen \n" +"Language-Team: Swedish \n" +"Language: sv\n" +"MIME-Version: 1.0\n" +"Content-Type: text/plain; charset=UTF-8\n" +"Content-Transfer-Encoding: 8bit\n" +"Plural-Forms: nplurals=2; plural=(n != 1);\n" +"X-Bugs: Report translation errors to the Language-Team address.\n" +"X-Generator: Poedit 2.2.1\n" + +#: gnu.scm:82 +#, scheme-format +msgid "module ~a not found" +msgstr "modul ~a hittades inte" + +#: gnu.scm:100 +msgid "" +"You may use @command{guix package --show=foo | grep location} to search\n" +"for the location of package @code{foo}.\n" +"If you get the line @code{location: gnu/packages/bar.scm:174:2},\n" +"add @code{bar} to the @code{use-package-modules} form." +msgstr "" +"Du kan använda @command{guix package --show=foo | grep location} för att söka\n" +"efter platsen för paket @code{foo}.\n" +"Om du får raden @code{location: gnu/packages/bar.scm:174:2},\n" +"lägg till @code{bar} till @code{use-package-modules}-formen." + +#: gnu.scm:108 +#, scheme-format +msgid "Try adding @code{(use-package-modules ~a)}." +msgstr "Prova att lägga till @code{(use-package-modules ~a)}." + +#: gnu.scm:123 +#, scheme-format +msgid "" +"You may use @command{guix system search ~a} to search for a service\n" +"matching @code{~a}.\n" +"If you get the line @code{location: gnu/services/foo.scm:188:2},\n" +"add @code{foo} to the @code{use-service-modules} form." +msgstr "" +"Du kan använda @command{guix system search ~a} för att söka efter en tjänst\n" +"som patchar @code{~a}.\n" +"Om du får raden @code{location: gnu/services/foo.scm:188:2},\n" +"lägg till @code{foo} till @code{use-service-modules}-formen." + +#: gnu.scm:132 +#, scheme-format +msgid "Try adding @code{(use-service-modules ~a)}." +msgstr "Prova att lägga till @code{(use-service-modules ~a)}." + +#: gnu/packages.scm:94 +#, scheme-format +msgid "~a: patch not found" +msgstr "~a: programfix hittades inte" + +#: gnu/packages.scm:110 +#, scheme-format +msgid "could not find bootstrap binary '~a' for system '~a'" +msgstr "kunde inte hitta uppstartsbinär ”~a” för system ”~a”" + +#: gnu/packages.scm:270 +#, scheme-format +msgid "ambiguous package specification `~a'~%" +msgstr "tvetydig paketspecifikation ”~a”~%" + +#: gnu/packages.scm:271 +#, scheme-format +msgid "choosing ~a@~a from ~a~%" +msgstr "väljer ~a@~a från ~a~%" + +#: gnu/packages.scm:276 guix/scripts/package.scm:206 +#, scheme-format +msgid "package '~a' has been superseded by '~a'~%" +msgstr "paket ”~a” har ersatts av ”~a”~%" + +#: gnu/packages.scm:283 +#, scheme-format +msgid "~A: package not found for version ~a~%" +msgstr "~A: paket hittades inte för version ~a~%" + +#: gnu/packages.scm:284 +#, scheme-format +msgid "~A: unknown package~%" +msgstr "~A: okänt paket~%" + +#: gnu/packages.scm:312 +#, scheme-format +msgid "package `~a' lacks output `~a'~%" +msgstr "paket ”~a” saknar utdata ”~a”~%" + +#: gnu/services.scm:238 +#, scheme-format +msgid "~a: no value specified for service of type '~a'" +msgstr "~a: inget värde angivet för tjänst av typ ”~a”" + +#: gnu/services.scm:336 +msgid "" +"Build the operating system top-level directory, which in\n" +"turn refers to everything the operating system needs: its kernel, initrd,\n" +"system profile, boot script, and so on." +msgstr "" +"Bygg operatigsystemets toppnivåkatalog, vilket i sin tur\n" +"refererar till allting som operativsystemet behöver: dess kärna, initrd,\n" +"systemprofile, startskript, och så vidare." + +#: gnu/services.scm:366 +msgid "" +"Produce the operating system's boot script, which is spawned\n" +"by the initrd once the root file system is mounted." +msgstr "" +"Producera operativsystemets startskript, vilka startas av\n" +"initrd när rotfilsystemet monterats." + +#: gnu/services.scm:422 +msgid "" +"Delete files from @file{/tmp}, @file{/var/run}, and other\n" +"temporary locations at boot time." +msgstr "" +"Ta bort filer från @file{/tmp}, @file{/var/run} och andra\n" +"temporära platser vid uppstart." + +#: gnu/services.scm:476 +msgid "" +"Run @dfn{activation} code at boot time and upon\n" +"@command{guix system reconfigure} completion." +msgstr "" +"Kör @dfn{activation}-koden vid uppstart och då\n" +"@command{guix system reconfigure} avslutas." + +#: gnu/services.scm:527 +msgid "" +"Add special files to the root file system---e.g.,\n" +"@file{/usr/bin/env}." +msgstr "" +"Lägg till speciella filer till rootfilsystemet — t.ex.\n" +"@file{/usr/bin/env}." + +#: gnu/services.scm:563 +msgid "Populate the @file{/etc} directory." +msgstr "Populera katalogen @file{/etc}." + +#: gnu/services.scm:580 +msgid "" +"Populate @file{/run/setuid-programs} with the specified\n" +"executables, making them setuid-root." +msgstr "" +"Populera @file{/run/setuid-programs} med de angivna\n" +"körbara programmen, och gör dem setuid-root." + +#: gnu/services.scm:600 +msgid "" +"This is the @dfn{system profile}, available as\n" +"@file{/run/current-system/profile}. It contains packages that the sysadmin\n" +"wants to be globally available to all the system users." +msgstr "" +"Detta är @dfn{system profilen}, som används som\n" +"@file{/run/current-system/profile}. Den innehåller paket som\n" +"systemadministratören vill ska vara tillgängliga globalt för alla systemanvändare." + +#: gnu/services.scm:620 +msgid "" +"Make ``firmware'' files loadable by the operating system\n" +"kernel. Firmware may then be uploaded to some of the machine's devices, such\n" +"as Wifi cards." +msgstr "" +"Gör ”fastprogramvaru”-filer inläsningsbara av operativsystemets\n" +"kärna. Fastprogramvara kan sedan skickas upp till vissa av maskinens enheter,\n" +"så som Wifi-kort." + +#: gnu/services.scm:651 +msgid "" +"Register garbage-collector roots---i.e., store items that\n" +"will not be reclaimed by the garbage collector." +msgstr "" +"Registrera skräpsamlarrötter — d.v.s. lagra objekt som\n" +"inte kommer att samlas in av skräpsamlaren." + +#: gnu/services.scm:676 +#, scheme-format +msgid "no target of type '~a' for service '~a'" +msgstr "inget mål av typ ”~a” för tjänst ”~a”" + +#: gnu/services.scm:702 gnu/services.scm:805 +#, scheme-format +msgid "more than one target service of type '~a'" +msgstr "mer än ett en måltjänst av typ ”~a”" + +#: gnu/services.scm:795 +#, scheme-format +msgid "service of type '~a' not found" +msgstr "tjänst av typ ”~a” hittades inte" + +#: gnu/system.scm:317 +#, scheme-format +msgid "unrecognized boot parameters at '~a'~%" +msgstr "okänd startparameter vid ”~a”~%" + +#: gnu/system.scm:725 +#, scheme-format +msgid "using a string for file '~a' is deprecated; use 'plain-file' instead~%" +msgstr "användning av sträng för fil ”~a” är föråldrat; använd ”plain-file” istället~%" + +#: gnu/system.scm:741 +#, scheme-format +msgid "using a monadic value for '~a' is deprecated; use 'plain-file' instead~%" +msgstr "användning av ett monadiskt värdet för ”~a” är föråldrat; använd ”plain-file” istället~%" + +#: gnu/system.scm:885 +#, scheme-format +msgid "~a: invalid locale name" +msgstr "~a: ogiltigt lokalnamn" + +#: gnu/services/shepherd.scm:192 +#, scheme-format +msgid "service '~a' provided more than once" +msgstr "tjänst ”~a” erbjud mer än en gång" + +#: gnu/services/shepherd.scm:207 +#, scheme-format +msgid "service '~a' requires '~a', which is not provided by any service" +msgstr "tjänst ”~a” kräver ”~a”, vilken inte erbjuds av någon tjänst" + +#: gnu/system/mapped-devices.scm:147 +#, scheme-format +msgid "you may need these modules in the initrd for ~a:~{ ~a~}" +msgstr "du kan behöver dessa moduler i initrd för ~a:~{ ~a~}" + +#: gnu/system/mapped-devices.scm:151 +#, scheme-format +msgid "" +"Try adding them to the\n" +"@code{initrd-modules} field of your @code{operating-system} declaration, along\n" +"these lines:\n" +"\n" +"@example\n" +" (operating-system\n" +" ;; @dots{}\n" +" (initrd-modules (append (list~{ ~s~})\n" +" %base-initrd-modules)))\n" +"@end example\n" +"\n" +"If you think this diagnostic is inaccurate, use the @option{--skip-checks}\n" +"option of @command{guix system}.\n" +msgstr "" +"Prova att lägga till dem till \n" +"@code{initrd-modules}-fältet i din @code{operating-system}-deklaration, tillsammans\n" +"med dessa rader:\n" +"\n" +"@example\n" +" (operating-system\n" +" ;; @dots{}\n" +" (initrd-modules (append (list~{ ~s~})\n" +" %base-initrd-modules)))\n" +"@end example\n" +"\n" +"Om du tror att denna diagnostik är felaktig, använd flaggan\n" +"@option{--skip-checks} med @command{guix system}.\n" + +#: gnu/system/mapped-devices.scm:230 +#, scheme-format +msgid "no LUKS partition with UUID '~a'" +msgstr "ingen LUKS-partition med UUID ”~a”" + +#: gnu/system/shadow.scm:258 +#, scheme-format +msgid "supplementary group '~a' of user '~a' is undeclared" +msgstr "tilläggsgrupp ”~a” för användare ”~a” är odeklarerad" + +#: gnu/system/shadow.scm:268 +#, scheme-format +msgid "primary group '~a' of user '~a' is undeclared" +msgstr "primärgrupp ”~a” för användare ”~a” är odeklarerad" + +#: guix/scripts.scm:60 +#, scheme-format +msgid "invalid argument: ~a~%" +msgstr "ogiltigt argument: ~a~%" + +#: guix/scripts.scm:88 guix/scripts/download.scm:135 +#: guix/scripts/import/cran.scm:84 guix/scripts/import/elpa.scm:85 +#: guix/scripts/publish.scm:881 guix/scripts/edit.scm:81 +#: guix/scripts/describe.scm:197 guix/scripts/processes.scm:216 +#, scheme-format +msgid "~A: unrecognized option~%" +msgstr "~A: okänd flagga~%" + +#: guix/scripts.scm:182 +#, scheme-format +msgid "Your Guix installation is ~a day old.\n" +msgid_plural "Your Guix installation is ~a days old.\n" +msgstr[0] "Din Guix-installation är ~a dag gammal.\n" +msgstr[1] "Din Guix-installation är ~a dagar gammal.\n" + +#: guix/scripts.scm:187 +#, scheme-format +msgid "" +"Consider running 'guix pull' followed by\n" +"'~a' to get up-to-date packages and security updates.\n" +msgstr "" +"Överväg att köra ”guix pull” följt av\n" +"”~a” för att få uppdaterade paket och säkerhetsfixar.\n" + +#: guix/scripts.scm:211 +#, scheme-format +msgid "only ~,1f% of free space available on ~a~%" +msgstr "endast ~,1f% fritt utrymme tillgängligt på ~a~%" + +#: guix/scripts.scm:214 +#, scheme-format +msgid "" +"Consider deleting old profile\n" +"generations and collecting garbage, along these lines:\n" +"\n" +"@example\n" +"guix package -p ~s --delete-generations=1m\n" +"guix gc\n" +"@end example\n" +msgstr "" +"Överväg att ta bort gamla profilgenerationer\n" +"och att skräpsamla med dessa rader:\n" +"\n" +"@example\n" +"guix package -p ~s --delete-generations=1m\n" +"guix gc\n" +"@end example\n" + +#: guix/scripts.scm:222 +msgid "" +"Consider running @command{guix gc} to free\n" +"space." +msgstr "" +"Överväg att köra @command{guix gc} för att\n" +"frigöra utrymme." + +#: guix/scripts/build.scm:84 +#, scheme-format +msgid "cannot access build log at '~a':~%" +msgstr "kan inte komma åt bygglogg vid ”~a”:~%" + +#: guix/scripts/build.scm:138 +#, scheme-format +msgid "failed to create GC root `~a': ~a~%" +msgstr "misslyckades med att skapa GC-rot ”~a”: ~a~%" + +#: guix/scripts/build.scm:240 +#, scheme-format +msgid "invalid replacement specification: ~s~%" +msgstr "ogiltig ersättningsspecifikation: ~s~%" + +#: guix/scripts/build.scm:297 +msgid "" +"\n" +" --with-source=SOURCE\n" +" use SOURCE when building the corresponding package" +msgstr "" +"\n" +" --with-source=KÄLLA\n" +" använd KÄLLA när motsvarande paket byggs" + +#: guix/scripts/build.scm:300 +msgid "" +"\n" +" --with-input=PACKAGE=REPLACEMENT\n" +" replace dependency PACKAGE by REPLACEMENT" +msgstr "" +"\n" +" --with-input=PAKET=ERSÄTTNING\n" +" ersätt PAKET-beroende med ERSÄTTNING" + +#: guix/scripts/build.scm:303 +msgid "" +"\n" +" --with-graft=PACKAGE=REPLACEMENT\n" +" graft REPLACEMENT on packages that refer to PACKAGE" +msgstr "" +"\n" +" --with-graft=PAKET=ERSÄTTNING\n" +" ympa in ERSÄTTNING för paket som refererar till PAKET" + +#: guix/scripts/build.scm:328 +#, scheme-format +msgid "transformation '~a' had no effect on ~a~%" +msgstr "transformation ”~a” hade ingen effekt på ~a~%" + +#: guix/scripts/build.scm:346 +msgid "" +"\n" +" -L, --load-path=DIR prepend DIR to the package module search path" +msgstr "" +"\n" +" -L, --load-path=KAT skjut in KAT i början på sökväg för paketmoduler" + +#: guix/scripts/build.scm:348 +msgid "" +"\n" +" -K, --keep-failed keep build tree of failed builds" +msgstr "" +"\n" +" -K, --keep-failed behåll byggträd för misslyckade byggen" + +#: guix/scripts/build.scm:350 +msgid "" +"\n" +" -k, --keep-going keep going when some of the derivations fail" +msgstr "" +"\n" +" -k, --keep-going fortsätt även om några av härledningarna misslyckades" + +#: guix/scripts/build.scm:352 +msgid "" +"\n" +" -n, --dry-run do not build the derivations" +msgstr "" +"\n" +" -n, --dry-run bygg inte härledningarna" + +#: guix/scripts/build.scm:354 +msgid "" +"\n" +" --fallback fall back to building when the substituter fails" +msgstr "" + +#: guix/scripts/build.scm:356 +msgid "" +"\n" +" --no-substitutes build instead of resorting to pre-built substitutes" +msgstr "" + +#: guix/scripts/build.scm:358 guix/scripts/size.scm:223 +msgid "" +"\n" +" --substitute-urls=URLS\n" +" fetch substitute from URLS if they are authorized" +msgstr "" + +#: guix/scripts/build.scm:361 +msgid "" +"\n" +" --no-grafts do not graft packages" +msgstr "" + +#: guix/scripts/build.scm:363 +msgid "" +"\n" +" --no-build-hook do not attempt to offload builds via the build hook" +msgstr "" + +#: guix/scripts/build.scm:365 +msgid "" +"\n" +" --max-silent-time=SECONDS\n" +" mark the build as failed after SECONDS of silence" +msgstr "" + +#: guix/scripts/build.scm:368 +msgid "" +"\n" +" --timeout=SECONDS mark the build as failed after SECONDS of activity" +msgstr "" + +#: guix/scripts/build.scm:370 +msgid "" +"\n" +" --verbosity=LEVEL use the given verbosity LEVEL" +msgstr "" + +#: guix/scripts/build.scm:372 +msgid "" +"\n" +" --rounds=N build N times in a row to detect non-determinism" +msgstr "" + +#: guix/scripts/build.scm:374 +msgid "" +"\n" +" -c, --cores=N allow the use of up to N CPU cores for the build" +msgstr "" + +#: guix/scripts/build.scm:376 +msgid "" +"\n" +" -M, --max-jobs=N allow at most N build jobs" +msgstr "" + +#: guix/scripts/build.scm:486 guix/scripts/build.scm:493 +#, scheme-format +msgid "not a number: '~a' option argument: ~a~%" +msgstr "" + +#: guix/scripts/build.scm:514 +msgid "" +"Usage: guix build [OPTION]... PACKAGE-OR-DERIVATION...\n" +"Build the given PACKAGE-OR-DERIVATION and return their output paths.\n" +msgstr "" + +#: guix/scripts/build.scm:516 +msgid "" +"\n" +" -e, --expression=EXPR build the package or derivation EXPR evaluates to" +msgstr "" + +#: guix/scripts/build.scm:518 +msgid "" +"\n" +" -f, --file=FILE build the package or derivation that the code within\n" +" FILE evaluates to" +msgstr "" + +#: guix/scripts/build.scm:521 +msgid "" +"\n" +" -S, --source build the packages' source derivations" +msgstr "" + +#: guix/scripts/build.scm:523 +msgid "" +"\n" +" --sources[=TYPE] build source derivations; TYPE may optionally be one\n" +" of \"package\", \"all\" (default), or \"transitive\"" +msgstr "" + +#: guix/scripts/build.scm:526 guix/scripts/pack.scm:712 +msgid "" +"\n" +" -s, --system=SYSTEM attempt to build for SYSTEM--e.g., \"i686-linux\"" +msgstr "" + +#: guix/scripts/build.scm:528 guix/scripts/pack.scm:714 +msgid "" +"\n" +" --target=TRIPLET cross-build for TRIPLET--e.g., \"armel-linux-gnu\"" +msgstr "" + +#: guix/scripts/build.scm:530 +msgid "" +"\n" +" -d, --derivations return the derivation paths of the given packages" +msgstr "" + +#: guix/scripts/build.scm:532 +msgid "" +"\n" +" --check rebuild items to check for non-determinism issues" +msgstr "" + +#: guix/scripts/build.scm:534 +msgid "" +"\n" +" --repair repair the specified items" +msgstr "" + +#: guix/scripts/build.scm:536 +msgid "" +"\n" +" -r, --root=FILE make FILE a symlink to the result, and register it\n" +" as a garbage collector root" +msgstr "" + +#: guix/scripts/build.scm:539 +msgid "" +"\n" +" -q, --quiet do not show the build log" +msgstr "" + +#: guix/scripts/build.scm:541 +msgid "" +"\n" +" --log-file return the log file names for the given derivations" +msgstr "" + +#: guix/scripts/build.scm:548 guix/scripts/download.scm:83 +#: guix/scripts/package.scm:366 guix/scripts/gc.scm:76 +#: guix/scripts/hash.scm:60 guix/scripts/import.scm:93 +#: guix/scripts/import/cran.scm:47 guix/scripts/pull.scm:95 +#: guix/scripts/substitute.scm:889 guix/scripts/system.scm:1017 +#: guix/scripts/lint.scm:1115 guix/scripts/publish.scm:94 +#: guix/scripts/edit.scm:44 guix/scripts/size.scm:234 +#: guix/scripts/graph.scm:472 guix/scripts/challenge.scm:241 +#: guix/scripts/copy.scm:122 guix/scripts/pack.scm:730 +#: guix/scripts/weather.scm:259 guix/scripts/describe.scm:71 +#: guix/scripts/processes.scm:200 guix/scripts/container.scm:34 +#: guix/scripts/container/exec.scm:43 +msgid "" +"\n" +" -h, --help display this help and exit" +msgstr "" + +#: guix/scripts/build.scm:550 guix/scripts/download.scm:85 +#: guix/scripts/package.scm:368 guix/scripts/gc.scm:78 +#: guix/scripts/hash.scm:62 guix/scripts/import.scm:95 +#: guix/scripts/import/cran.scm:51 guix/scripts/pull.scm:97 +#: guix/scripts/substitute.scm:891 guix/scripts/system.scm:1019 +#: guix/scripts/lint.scm:1119 guix/scripts/publish.scm:96 +#: guix/scripts/edit.scm:46 guix/scripts/size.scm:236 +#: guix/scripts/graph.scm:474 guix/scripts/challenge.scm:243 +#: guix/scripts/copy.scm:124 guix/scripts/pack.scm:732 +#: guix/scripts/weather.scm:261 guix/scripts/describe.scm:73 +#: guix/scripts/processes.scm:202 guix/scripts/container.scm:36 +#: guix/scripts/container/exec.scm:45 +msgid "" +"\n" +" -V, --version display version information and exit" +msgstr "" + +#: guix/scripts/build.scm:577 +#, scheme-format +msgid "" +"invalid argument: '~a' option argument: ~a, ~\n" +"must be one of 'package', 'all', or 'transitive'~%" +msgstr "" + +#: guix/scripts/build.scm:630 +#, scheme-format +msgid "~s: not something we can build~%" +msgstr "" + +#: guix/scripts/build.scm:688 +#, scheme-format +msgid "~a: warning: package '~a' has no source~%" +msgstr "" + +#: guix/scripts/build.scm:726 +#, scheme-format +msgid "no build log for '~a'~%" +msgstr "" + +#: guix/discovery.scm:91 +#, scheme-format +msgid "cannot access `~a': ~a~%" +msgstr "" + +#: guix/scripts/download.scm:69 +msgid "" +"Usage: guix download [OPTION] URL\n" +"Download the file at URL to the store or to the given file, and print its\n" +"file name and the hash of its contents.\n" +"\n" +"Supported formats: 'nix-base32' (default), 'base32', and 'base16'\n" +"('hex' and 'hexadecimal' can be used as well).\n" +msgstr "" + +#: guix/scripts/download.scm:75 guix/scripts/hash.scm:55 +msgid "" +"\n" +" -f, --format=FMT write the hash in the given format" +msgstr "" + +#: guix/scripts/download.scm:77 +msgid "" +"\n" +" --no-check-certificate\n" +" do not validate the certificate of HTTPS servers " +msgstr "" + +#: guix/scripts/download.scm:80 +msgid "" +"\n" +" -o, --output=FILE download to FILE" +msgstr "" + +#: guix/scripts/download.scm:103 guix/scripts/hash.scm:83 +#, scheme-format +msgid "unsupported hash format: ~a~%" +msgstr "" + +#: guix/scripts/download.scm:138 guix/scripts/package.scm:905 +#: guix/scripts/publish.scm:883 +#, scheme-format +msgid "~A: extraneous argument~%" +msgstr "" + +#: guix/scripts/download.scm:146 +#, scheme-format +msgid "no download URI was specified~%" +msgstr "" + +#: guix/scripts/download.scm:151 +#, scheme-format +msgid "~a: failed to parse URI~%" +msgstr "" + +#: guix/scripts/download.scm:161 +#, scheme-format +msgid "~a: download failed~%" +msgstr "" + +#: guix/scripts/package.scm:109 +#, scheme-format +msgid "not removing generation ~a, which is current~%" +msgstr "" + +#: guix/scripts/package.scm:116 +#, scheme-format +msgid "no matching generation~%" +msgstr "" + +#: guix/scripts/package.scm:119 guix/scripts/package.scm:707 +#: guix/scripts/system.scm:622 +#, scheme-format +msgid "invalid syntax: ~a~%" +msgstr "" + +#: guix/scripts/package.scm:148 +#, scheme-format +msgid "nothing to be done~%" +msgstr "" + +#: guix/scripts/package.scm:162 +#, scheme-format +msgid "~a package in profile~%" +msgid_plural "~a packages in profile~%" +msgstr[0] "" +msgstr[1] "" + +#: guix/scripts/package.scm:248 +#, scheme-format +msgid "package '~a' no longer exists~%" +msgstr "" + +#: guix/scripts/package.scm:286 +#, scheme-format +msgid "The following environment variable definitions may be needed:~%" +msgstr "" + +#: guix/scripts/package.scm:305 +msgid "" +"Usage: guix package [OPTION]...\n" +"Install, remove, or upgrade packages in a single transaction.\n" +msgstr "" + +#: guix/scripts/package.scm:307 +msgid "" +"\n" +" -i, --install PACKAGE ...\n" +" install PACKAGEs" +msgstr "" + +#: guix/scripts/package.scm:310 +msgid "" +"\n" +" -e, --install-from-expression=EXP\n" +" install the package EXP evaluates to" +msgstr "" + +#: guix/scripts/package.scm:313 +msgid "" +"\n" +" -f, --install-from-file=FILE\n" +" install the package that the code within FILE\n" +" evaluates to" +msgstr "" + +#: guix/scripts/package.scm:317 +msgid "" +"\n" +" -r, --remove PACKAGE ...\n" +" remove PACKAGEs" +msgstr "" + +#: guix/scripts/package.scm:320 +msgid "" +"\n" +" -u, --upgrade[=REGEXP] upgrade all the installed packages matching REGEXP" +msgstr "" + +#: guix/scripts/package.scm:322 +msgid "" +"\n" +" -m, --manifest=FILE create a new profile generation with the manifest\n" +" from FILE" +msgstr "" + +#: guix/scripts/package.scm:325 +msgid "" +"\n" +" --do-not-upgrade[=REGEXP] do not upgrade any packages matching REGEXP" +msgstr "" + +#: guix/scripts/package.scm:327 +msgid "" +"\n" +" --roll-back roll back to the previous generation" +msgstr "" + +#: guix/scripts/package.scm:329 +msgid "" +"\n" +" --search-paths[=KIND]\n" +" display needed environment variable definitions" +msgstr "" + +#: guix/scripts/package.scm:332 guix/scripts/pull.scm:84 +msgid "" +"\n" +" -l, --list-generations[=PATTERN]\n" +" list generations matching PATTERN" +msgstr "" + +#: guix/scripts/package.scm:335 +msgid "" +"\n" +" -d, --delete-generations[=PATTERN]\n" +" delete generations matching PATTERN" +msgstr "" + +#: guix/scripts/package.scm:338 +msgid "" +"\n" +" -S, --switch-generation=PATTERN\n" +" switch to a generation matching PATTERN" +msgstr "" + +#: guix/scripts/package.scm:341 +msgid "" +"\n" +" -p, --profile=PROFILE use PROFILE instead of the user's default profile" +msgstr "" + +#: guix/scripts/package.scm:344 +msgid "" +"\n" +" --allow-collisions do not treat collisions in the profile as an error" +msgstr "" + +#: guix/scripts/package.scm:346 +msgid "" +"\n" +" --bootstrap use the bootstrap Guile to build the profile" +msgstr "" + +#: guix/scripts/package.scm:348 guix/scripts/pull.scm:74 +msgid "" +"\n" +" --verbose produce verbose output" +msgstr "" + +#: guix/scripts/package.scm:351 +msgid "" +"\n" +" -s, --search=REGEXP search in synopsis and description using REGEXP" +msgstr "" + +#: guix/scripts/package.scm:353 +msgid "" +"\n" +" -I, --list-installed[=REGEXP]\n" +" list installed packages matching REGEXP" +msgstr "" + +#: guix/scripts/package.scm:356 +msgid "" +"\n" +" -A, --list-available[=REGEXP]\n" +" list available packages matching REGEXP" +msgstr "" + +#: guix/scripts/package.scm:359 +msgid "" +"\n" +" --show=PACKAGE show details about PACKAGE" +msgstr "" + +#: guix/scripts/package.scm:411 +#, scheme-format +msgid "upgrade regexp '~a' looks like a command-line option~%" +msgstr "" + +#: guix/scripts/package.scm:414 +#, scheme-format +msgid "is this intended?~%" +msgstr "" + +#: guix/scripts/package.scm:459 +#, scheme-format +msgid "~a: unsupported kind of search path~%" +msgstr "" + +#: guix/scripts/package.scm:776 +#, scheme-format +msgid "~a~@[@~a~]: package not found~%" +msgstr "" + +#: guix/scripts/package.scm:810 +#, scheme-format +msgid "cannot switch to generation '~a'~%" +msgstr "" + +#: guix/scripts/package.scm:827 +#, scheme-format +msgid "would install new manifest from '~a' with ~d entries~%" +msgstr "" + +#: guix/scripts/package.scm:829 +#, scheme-format +msgid "installing new manifest from '~a' with ~d entries~%" +msgstr "" + +#: guix/scripts/gc.scm:42 +msgid "" +"Usage: guix gc [OPTION]... PATHS...\n" +"Invoke the garbage collector.\n" +msgstr "" + +#: guix/scripts/gc.scm:44 +msgid "" +"\n" +" -C, --collect-garbage[=MIN]\n" +" collect at least MIN bytes of garbage" +msgstr "" + +#: guix/scripts/gc.scm:47 +msgid "" +"\n" +" -F, --free-space=FREE attempt to reach FREE available space in the store" +msgstr "" + +#: guix/scripts/gc.scm:49 +msgid "" +"\n" +" -d, --delete attempt to delete PATHS" +msgstr "" + +#: guix/scripts/gc.scm:51 +msgid "" +"\n" +" --optimize optimize the store by deduplicating identical files" +msgstr "" + +#: guix/scripts/gc.scm:53 +msgid "" +"\n" +" --list-dead list dead paths" +msgstr "" + +#: guix/scripts/gc.scm:55 +msgid "" +"\n" +" --list-live list live paths" +msgstr "" + +#: guix/scripts/gc.scm:58 +msgid "" +"\n" +" --references list the references of PATHS" +msgstr "" + +#: guix/scripts/gc.scm:60 +msgid "" +"\n" +" -R, --requisites list the requisites of PATHS" +msgstr "" + +#: guix/scripts/gc.scm:62 +msgid "" +"\n" +" --referrers list the referrers of PATHS" +msgstr "" + +#: guix/scripts/gc.scm:64 +msgid "" +"\n" +" --derivers list the derivers of PATHS" +msgstr "" + +#: guix/scripts/gc.scm:67 +msgid "" +"\n" +" --verify[=OPTS] verify the integrity of the store; OPTS is a\n" +" comma-separated combination of 'repair' and\n" +" 'contents'" +msgstr "" + +#: guix/scripts/gc.scm:71 +msgid "" +"\n" +" --list-failures list cached build failures" +msgstr "" + +#: guix/scripts/gc.scm:73 +msgid "" +"\n" +" --clear-failures remove PATHS from the set of cached failures" +msgstr "" + +#: guix/scripts/gc.scm:87 +#, scheme-format +msgid "~a: invalid '--verify' option~%" +msgstr "" + +#: guix/scripts/gc.scm:117 +#, scheme-format +msgid "invalid amount of storage: ~a~%" +msgstr "" + +#: guix/scripts/gc.scm:202 +msgid "already ~h MiBs available on ~a, nothing to do~%" +msgstr "" + +#: guix/scripts/gc.scm:205 +msgid "freeing ~h MiBs~%" +msgstr "" + +#: guix/scripts/gc.scm:217 +#, scheme-format +msgid "extraneous arguments: ~{~a ~}~%" +msgstr "" + +#: guix/scripts/gc.scm:237 guix/scripts/gc.scm:240 +msgid "freed ~h MiBs~%" +msgstr "" + +#: guix/scripts/hash.scm:48 +msgid "" +"Usage: guix hash [OPTION] FILE\n" +"Return the cryptographic hash of FILE.\n" +"\n" +"Supported formats: 'nix-base32' (default), 'base32', and 'base16' ('hex'\n" +"and 'hexadecimal' can be used as well).\n" +msgstr "" + +#: guix/scripts/hash.scm:53 +msgid "" +"\n" +" -x, --exclude-vcs exclude version control directories" +msgstr "" + +#: guix/scripts/hash.scm:57 +msgid "" +"\n" +" -r, --recursive compute the hash on FILE recursively" +msgstr "" + +#: guix/scripts/hash.scm:151 guix/ui.scm:371 guix/ui.scm:728 guix/ui.scm:781 +#, scheme-format +msgid "~a~%" +msgstr "" + +#: guix/scripts/hash.scm:154 guix/scripts/system.scm:1189 +#: guix/scripts/system.scm:1198 guix/scripts/system.scm:1205 +#, scheme-format +msgid "wrong number of arguments~%" +msgstr "" + +#: guix/scripts/import.scm:87 +msgid "" +"Usage: guix import IMPORTER ARGS ...\n" +"Run IMPORTER with ARGS.\n" +msgstr "" + +#: guix/scripts/import.scm:90 +msgid "IMPORTER must be one of the importers listed below:\n" +msgstr "" + +#: guix/scripts/import.scm:104 +#, scheme-format +msgid "guix import: missing importer name~%" +msgstr "" + +#: guix/scripts/import.scm:124 +#, scheme-format +msgid "'~a' import failed~%" +msgstr "" + +#: guix/scripts/import.scm:125 +#, scheme-format +msgid "~a: invalid importer~%" +msgstr "" + +#: guix/scripts/import/cran.scm:43 +msgid "" +"Usage: guix import cran PACKAGE-NAME\n" +"Import and convert the CRAN package for PACKAGE-NAME.\n" +msgstr "" + +#: guix/scripts/import/cran.scm:45 +msgid "" +"\n" +" -a, --archive=ARCHIVE specify the archive repository" +msgstr "" + +#: guix/scripts/import/cran.scm:49 +msgid "" +"\n" +" -r, --recursive import packages recursively" +msgstr "" + +#: guix/scripts/import/cran.scm:112 +#, scheme-format +msgid "failed to download description for package '~a'~%" +msgstr "" + +#: guix/scripts/import/cran.scm:116 guix/scripts/import/elpa.scm:113 +#, scheme-format +msgid "too few arguments~%" +msgstr "" + +#: guix/scripts/import/cran.scm:118 guix/scripts/import/elpa.scm:115 +#, scheme-format +msgid "too many arguments~%" +msgstr "" + +#: guix/scripts/import/elpa.scm:44 +msgid "" +"Usage: guix import elpa PACKAGE-NAME\n" +"Import the latest package named PACKAGE-NAME from an ELPA repository.\n" +msgstr "" + +#: guix/scripts/import/elpa.scm:46 +msgid "" +"\n" +" -a, --archive=ARCHIVE specify the archive repository" +msgstr "" + +#: guix/scripts/import/elpa.scm:48 +msgid "" +"\n" +" -h, --help display this help and exit" +msgstr "" + +#: guix/scripts/import/elpa.scm:50 +msgid "" +"\n" +" -r, --recursive generate package expressions for all Emacs packages that are not yet in Guix" +msgstr "" + +#: guix/scripts/import/elpa.scm:52 +msgid "" +"\n" +" -V, --version display version information and exit" +msgstr "" + +#: guix/scripts/import/elpa.scm:110 +#, scheme-format +msgid "failed to download package '~a'~%" +msgstr "" + +#: guix/scripts/pull.scm:72 +msgid "" +"Usage: guix pull [OPTION]...\n" +"Download and deploy the latest version of Guix.\n" +msgstr "" + +#: guix/scripts/pull.scm:76 +msgid "" +"\n" +" -C, --channels=FILE deploy the channels defined in FILE" +msgstr "" + +#: guix/scripts/pull.scm:78 +msgid "" +"\n" +" --url=URL download from the Git repository at URL" +msgstr "" + +#: guix/scripts/pull.scm:80 +msgid "" +"\n" +" --commit=COMMIT download the specified COMMIT" +msgstr "" + +#: guix/scripts/pull.scm:82 +msgid "" +"\n" +" --branch=BRANCH download the tip of the specified BRANCH" +msgstr "" + +#: guix/scripts/pull.scm:87 +#, scheme-format +msgid "" +"\n" +" -p, --profile=PROFILE use PROFILE instead of ~/.config/guix/current" +msgstr "" + +#: guix/scripts/pull.scm:89 +msgid "" +"\n" +" -n, --dry-run show what would be pulled and built" +msgstr "" + +#: guix/scripts/pull.scm:91 +msgid "" +"\n" +" --bootstrap use the bootstrap Guile to build the new Guix" +msgstr "" + +#: guix/scripts/pull.scm:165 +msgid "New in this revision:\n" +msgstr "" + +#: guix/scripts/pull.scm:223 +#, scheme-format +msgid "Git error ~a~%" +msgstr "" + +#: guix/scripts/pull.scm:225 +#, scheme-format +msgid "Git error: ~a~%" +msgstr "" + +#: guix/scripts/pull.scm:250 +#, scheme-format +msgid "Migrating profile generations to '~a'...~%" +msgstr "" + +#: guix/scripts/pull.scm:285 +#, scheme-format +msgid "while creating symlink '~a': ~a~%" +msgstr "" + +#: guix/scripts/pull.scm:307 +#, scheme-format +msgid " repository URL: ~a~%" +msgstr "" + +#: guix/scripts/pull.scm:309 +#, scheme-format +msgid " branch: ~a~%" +msgstr "" + +#: guix/scripts/pull.scm:310 +#, scheme-format +msgid " commit: ~a~%" +msgstr "" + +#: guix/scripts/pull.scm:376 +msgid " ~h new package: ~a~%" +msgid_plural " ~h new packages: ~a~%" +msgstr[0] "" +msgstr[1] "" + +#: guix/scripts/pull.scm:387 +msgid " ~h package upgraded: ~a~%" +msgid_plural " ~h packages upgraded: ~a~%" +msgstr[0] "" +msgstr[1] "" + +#: guix/scripts/pull.scm:451 +#, scheme-format +msgid "'~a' did not return a list of channels~%" +msgstr "" + +#: guix/scripts/pull.scm:465 +#, scheme-format +msgid "" +"The 'GUIX_PULL_URL' environment variable is deprecated.\n" +"Use '~/.config/guix/channels.scm' instead." +msgstr "" + +#: guix/scripts/pull.scm:490 +#, scheme-format +msgid "'--url', '--commit', and '--branch' are not applicable~%" +msgstr "" + +#: guix/scripts/pull.scm:515 +#, scheme-format +msgid "Building from this channel:~%" +msgid_plural "Building from these channels:~%" +msgstr[0] "" +msgstr[1] "" + +#: guix/scripts/substitute.scm:126 +#, scheme-format +msgid "authentication and authorization of substitutes disabled!~%" +msgstr "" + +#: guix/scripts/substitute.scm:201 +#, scheme-format +msgid "download from '~a' failed: ~a, ~s~%" +msgstr "" + +#: guix/scripts/substitute.scm:214 +#, scheme-format +msgid "while fetching ~a: server is somewhat slow~%" +msgstr "" + +#: guix/scripts/substitute.scm:216 +#, scheme-format +msgid "try `--no-substitutes' if the problem persists~%" +msgstr "" + +#: guix/scripts/substitute.scm:226 +#, scheme-format +msgid "unsupported substitute URI scheme: ~a~%" +msgstr "" + +#: guix/scripts/substitute.scm:261 +#, scheme-format +msgid "while fetching '~a': ~a (~s)~%" +msgstr "" + +#: guix/scripts/substitute.scm:266 +#, scheme-format +msgid "ignoring substitute server at '~s'~%" +msgstr "" + +#: guix/scripts/substitute.scm:316 +#, scheme-format +msgid "signature version must be a number: ~s~%" +msgstr "" + +#: guix/scripts/substitute.scm:320 +#, scheme-format +msgid "unsupported signature version: ~a~%" +msgstr "" + +#: guix/scripts/substitute.scm:328 +#, scheme-format +msgid "signature is not a valid s-expression: ~s~%" +msgstr "" + +#: guix/scripts/substitute.scm:332 +#, scheme-format +msgid "invalid format of the signature field: ~a~%" +msgstr "" + +#: guix/scripts/substitute.scm:367 +#, scheme-format +msgid "invalid signature for '~a'~%" +msgstr "" + +#: guix/scripts/substitute.scm:369 +#, scheme-format +msgid "hash mismatch for '~a'~%" +msgstr "" + +#: guix/scripts/substitute.scm:371 +#, scheme-format +msgid "'~a' is signed with an unauthorized key~%" +msgstr "" + +#: guix/scripts/substitute.scm:373 +#, scheme-format +msgid "signature on '~a' is corrupt~%" +msgstr "" + +#: guix/scripts/substitute.scm:458 +#, scheme-format +msgid "'~a' does not name a store item~%" +msgstr "" + +#: guix/scripts/substitute.scm:620 +#, scheme-format +msgid "updating substitutes from '~a'... ~5,1f%" +msgstr "" + +#: guix/scripts/substitute.scm:684 +#, scheme-format +msgid "~s: unsupported server URI scheme~%" +msgstr "" + +#: guix/scripts/substitute.scm:694 +#, scheme-format +msgid "'~a' uses different store '~a'; ignoring it~%" +msgstr "" + +#: guix/scripts/substitute.scm:863 +#, scheme-format +msgid "host name lookup error: ~a~%" +msgstr "" + +#: guix/scripts/substitute.scm:868 +#, scheme-format +msgid "TLS error in procedure '~a': ~a~%" +msgstr "" + +#: guix/scripts/substitute.scm:879 +msgid "" +"Usage: guix substitute [OPTION]...\n" +"Internal tool to substitute a pre-built binary to a local build.\n" +msgstr "" + +#: guix/scripts/substitute.scm:881 +msgid "" +"\n" +" --query report on the availability of substitutes for the\n" +" store file names passed on the standard input" +msgstr "" + +#: guix/scripts/substitute.scm:884 +msgid "" +"\n" +" --substitute STORE-FILE DESTINATION\n" +" download STORE-FILE and store it as a Nar in file\n" +" DESTINATION" +msgstr "" + +#: guix/scripts/substitute.scm:949 +#, scheme-format +msgid "no valid substitute for '~a'~%" +msgstr "" + +#: guix/scripts/substitute.scm:957 +#, scheme-format +msgid "Downloading ~a...~%" +msgstr "" + +#: guix/scripts/substitute.scm:1019 +msgid "ACL for archive imports seems to be uninitialized, substitutes may be unavailable\n" +msgstr "" + +#: guix/scripts/substitute.scm:1073 +#, scheme-format +msgid "~a: invalid URI~%" +msgstr "" + +#: guix/scripts/substitute.scm:1144 +#, scheme-format +msgid "~a: unrecognized options~%" +msgstr "" + +#: guix/scripts/authenticate.scm:59 +#, scheme-format +msgid "cannot find public key for secret key '~a'~%" +msgstr "" + +#: guix/scripts/authenticate.scm:79 +#, scheme-format +msgid "error: invalid signature: ~a~%" +msgstr "" + +#: guix/scripts/authenticate.scm:81 +#, scheme-format +msgid "error: unauthorized public key: ~a~%" +msgstr "" + +#: guix/scripts/authenticate.scm:83 +#, scheme-format +msgid "error: corrupt signature data: ~a~%" +msgstr "" + +#: guix/scripts/authenticate.scm:121 +msgid "" +"Usage: guix authenticate OPTION...\n" +"Sign or verify the signature on the given file. This tool is meant to\n" +"be used internally by 'guix-daemon'.\n" +msgstr "" + +#: guix/scripts/authenticate.scm:127 +msgid "wrong arguments" +msgstr "" + +#: guix/scripts/system.scm:148 +#, scheme-format +msgid "failed to register '~a' under '~a'~%" +msgstr "" + +#: guix/scripts/system.scm:163 +#, scheme-format +msgid "copying to '~a'..." +msgstr "" + +#: guix/scripts/system.scm:204 +#, scheme-format +msgid "failed to install bootloader ~a~%" +msgstr "" + +#: guix/scripts/system.scm:224 +#, scheme-format +msgid "initializing the current root file system~%" +msgstr "" + +#: guix/scripts/system.scm:238 +#, scheme-format +msgid "not running as 'root', so the ownership of '~a' may be incorrect!~%" +msgstr "" + +#: guix/scripts/system.scm:290 +#, scheme-format +msgid "while talking to shepherd: ~a~%" +msgstr "" + +#: guix/scripts/system.scm:297 +#, scheme-format +msgid "service '~a' could not be found~%" +msgstr "" + +#: guix/scripts/system.scm:300 +#, scheme-format +msgid "service '~a' does not have an action '~a'~%" +msgstr "" + +#: guix/scripts/system.scm:304 +#, scheme-format +msgid "exception caught while executing '~a' on service '~a':~%" +msgstr "" + +#: guix/scripts/system.scm:312 +#, scheme-format +msgid "something went wrong: ~s~%" +msgstr "" + +#: guix/scripts/system.scm:315 +#, scheme-format +msgid "shepherd error~%" +msgstr "" + +#: guix/scripts/system.scm:332 +#, scheme-format +msgid "failed to obtain list of shepherd services~%" +msgstr "" + +#: guix/scripts/system.scm:352 +#, scheme-format +msgid "unloading service '~a'...~%" +msgstr "" + +#: guix/scripts/system.scm:361 +#, scheme-format +msgid "loading new services:~{ ~a~}...~%" +msgstr "" + +#: guix/scripts/system.scm:366 +msgid "" +"To complete the upgrade, run 'herd restart SERVICE' to stop,\n" +"upgrade, and restart each service that was not automatically restarted.\n" +msgstr "" + +#: guix/scripts/system.scm:393 +#, scheme-format +msgid "activating system...~%" +msgstr "" + +#: guix/scripts/system.scm:471 +#, scheme-format +msgid "cannot switch to system generation '~a'~%" +msgstr "" + +#: guix/scripts/system.scm:542 +msgid "the DAG of services" +msgstr "" + +#: guix/scripts/system.scm:555 +msgid "the dependency graph of shepherd services" +msgstr "" + +#: guix/scripts/system.scm:579 +#, scheme-format +msgid " file name: ~a~%" +msgstr "" + +#: guix/scripts/system.scm:580 +#, scheme-format +msgid " canonical file name: ~a~%" +msgstr "" + +#. TRANSLATORS: Please preserve the two-space indentation. +#: guix/scripts/system.scm:582 +#, scheme-format +msgid " label: ~a~%" +msgstr "" + +#: guix/scripts/system.scm:583 +#, scheme-format +msgid " bootloader: ~a~%" +msgstr "" + +#. TRANSLATORS: The '~[', '~;', and '~]' sequences in this string must +#. be preserved. They denote conditionals, such that the result will +#. look like: +#. root device: UUID: 12345-678 +#. or: +#. root device: label: "my-root" +#. or just: +#. root device: /dev/sda3 +#: guix/scripts/system.scm:593 +#, scheme-format +msgid " root device: ~[UUID: ~a~;label: ~s~;~a~]~%" +msgstr "" + +#: guix/scripts/system.scm:604 +#, scheme-format +msgid " kernel: ~a~%" +msgstr "" + +#: guix/scripts/system.scm:675 +#, scheme-format +msgid "~a: error: device '~a' not found: ~a~%" +msgstr "" + +#: guix/scripts/system.scm:679 +#, scheme-format +msgid "" +"If '~a' is a file system\n" +"label, write @code{(file-system-label ~s)} in your @code{device} field." +msgstr "" + +#: guix/scripts/system.scm:687 +#, scheme-format +msgid "~a: error: file system with label '~a' not found~%" +msgstr "" + +#: guix/scripts/system.scm:692 +#, scheme-format +msgid "~a: error: file system with UUID '~a' not found~%" +msgstr "" + +#: guix/scripts/system.scm:793 +#, scheme-format +msgid "~a not found: 'guix pull' was never run~%" +msgstr "" + +#: guix/scripts/system.scm:794 +#, scheme-format +msgid "Consider running 'guix pull' before 'reconfigure'.~%" +msgstr "" + +#: guix/scripts/system.scm:795 +#, scheme-format +msgid "Failing to do that may downgrade your system!~%" +msgstr "" + +#: guix/scripts/system.scm:907 +#, scheme-format +msgid "initializing operating system under '~a'...~%" +msgstr "" + +#: guix/scripts/system.scm:952 +msgid "" +"Usage: guix system [OPTION ...] ACTION [ARG ...] [FILE]\n" +"Build the operating system declared in FILE according to ACTION.\n" +"Some ACTIONS support additional ARGS.\n" +msgstr "" + +#: guix/scripts/system.scm:956 guix/scripts/container.scm:29 +msgid "The valid values for ACTION are:\n" +msgstr "" + +#: guix/scripts/system.scm:958 +msgid " search search for existing service types\n" +msgstr "" + +#: guix/scripts/system.scm:960 +msgid " reconfigure switch to a new operating system configuration\n" +msgstr "" + +#: guix/scripts/system.scm:962 +msgid " roll-back switch to the previous operating system configuration\n" +msgstr "" + +#: guix/scripts/system.scm:964 +msgid " switch-generation switch to an existing operating system configuration\n" +msgstr "" + +#: guix/scripts/system.scm:966 +msgid " list-generations list the system generations\n" +msgstr "" + +#: guix/scripts/system.scm:968 +msgid " build build the operating system without installing anything\n" +msgstr "" + +#: guix/scripts/system.scm:970 +msgid " container build a container that shares the host's store\n" +msgstr "" + +#: guix/scripts/system.scm:972 +msgid " vm build a virtual machine image that shares the host's store\n" +msgstr "" + +#: guix/scripts/system.scm:974 +msgid " vm-image build a freestanding virtual machine image\n" +msgstr "" + +#: guix/scripts/system.scm:976 +msgid " disk-image build a disk image, suitable for a USB stick\n" +msgstr "" + +#: guix/scripts/system.scm:978 +msgid " docker-image build a Docker image\n" +msgstr "" + +#: guix/scripts/system.scm:980 +msgid " init initialize a root file system to run GNU\n" +msgstr "" + +#: guix/scripts/system.scm:982 +msgid " extension-graph emit the service extension graph in Dot format\n" +msgstr "" + +#: guix/scripts/system.scm:984 +msgid " shepherd-graph emit the graph of shepherd services in Dot format\n" +msgstr "" + +#: guix/scripts/system.scm:988 +msgid "" +"\n" +" -d, --derivation return the derivation of the given system" +msgstr "" + +#: guix/scripts/system.scm:990 +msgid "" +"\n" +" -e, --expression=EXPR consider the operating-system EXPR evaluates to\n" +" instead of reading FILE, when applicable" +msgstr "" + +#: guix/scripts/system.scm:993 +msgid "" +"\n" +" --on-error=STRATEGY\n" +" apply STRATEGY when an error occurs while reading FILE" +msgstr "" + +#: guix/scripts/system.scm:996 +msgid "" +"\n" +" --file-system-type=TYPE\n" +" for 'disk-image', produce a root file system of TYPE\n" +" (one of 'ext4', 'iso9660')" +msgstr "" + +#: guix/scripts/system.scm:1000 +msgid "" +"\n" +" --image-size=SIZE for 'vm-image', produce an image of SIZE" +msgstr "" + +#: guix/scripts/system.scm:1002 +msgid "" +"\n" +" --no-bootloader for 'init', do not install a bootloader" +msgstr "" + +#: guix/scripts/system.scm:1004 +msgid "" +"\n" +" --share=SPEC for 'vm', share host file system according to SPEC" +msgstr "" + +#: guix/scripts/system.scm:1006 +msgid "" +"\n" +" -r, --root=FILE for 'vm', 'vm-image', 'disk-image', 'container',\n" +" and 'build', make FILE a symlink to the result, and\n" +" register it as a garbage collector root" +msgstr "" + +#: guix/scripts/system.scm:1010 +msgid "" +"\n" +" --expose=SPEC for 'vm', expose host file system according to SPEC" +msgstr "" + +#: guix/scripts/system.scm:1012 +msgid "" +"\n" +" --full-boot for 'vm', make a full boot sequence" +msgstr "" + +#: guix/scripts/system.scm:1014 +msgid "" +"\n" +" --skip-checks skip file system and initrd module safety checks" +msgstr "" + +#: guix/scripts/system.scm:1116 +#, scheme-format +msgid "both file and expression cannot be specified~%" +msgstr "" + +#: guix/scripts/system.scm:1123 +#, scheme-format +msgid "no configuration specified~%" +msgstr "" + +#: guix/scripts/system.scm:1224 +#, scheme-format +msgid "~a: unknown action~%" +msgstr "" + +#: guix/scripts/system.scm:1240 +#, scheme-format +msgid "wrong number of arguments for action '~a'~%" +msgstr "" + +#: guix/scripts/system.scm:1245 +#, scheme-format +msgid "guix system: missing command name~%" +msgstr "" + +#: guix/scripts/system.scm:1247 +#, scheme-format +msgid "Try 'guix system --help' for more information.~%" +msgstr "" + +#: guix/scripts/system/search.scm:88 guix/ui.scm:1205 guix/ui.scm:1219 +msgid "unknown" +msgstr "" + +#: guix/scripts/lint.scm:140 +#, scheme-format +msgid "Available checkers:~%" +msgstr "" + +#: guix/scripts/lint.scm:164 +msgid "description should not be empty" +msgstr "" + +#: guix/scripts/lint.scm:174 +msgid "Texinfo markup in description is invalid" +msgstr "" + +#: guix/scripts/lint.scm:184 +#, scheme-format +msgid "" +"description should not contain ~\n" +"trademark sign '~a' at ~d" +msgstr "" + +#. TRANSLATORS: '@code' is Texinfo markup and must be kept +#. as is. +#: guix/scripts/lint.scm:197 +msgid "use @code or similar ornament instead of quotes" +msgstr "" + +#: guix/scripts/lint.scm:204 +msgid "description should start with an upper-case letter or digit" +msgstr "" + +#: guix/scripts/lint.scm:220 +#, scheme-format +msgid "" +"sentences in description should be followed ~\n" +"by two spaces; possible infraction~p at ~{~a~^, ~}" +msgstr "" + +#: guix/scripts/lint.scm:238 +#, scheme-format +msgid "invalid description: ~s" +msgstr "" + +#: guix/scripts/lint.scm:283 +#, scheme-format +msgid "'~a' should probably be a native input" +msgstr "" + +#: guix/scripts/lint.scm:299 +#, scheme-format +msgid "'~a' should probably not be an input at all" +msgstr "" + +#: guix/scripts/lint.scm:316 +msgid "synopsis should not be empty" +msgstr "" + +#: guix/scripts/lint.scm:324 +msgid "no period allowed at the end of the synopsis" +msgstr "" + +#: guix/scripts/lint.scm:336 +msgid "no article allowed at the beginning of the synopsis" +msgstr "" + +#: guix/scripts/lint.scm:343 +msgid "synopsis should be less than 80 characters long" +msgstr "" + +#: guix/scripts/lint.scm:349 +msgid "synopsis should start with an upper-case letter or digit" +msgstr "" + +#: guix/scripts/lint.scm:356 +msgid "synopsis should not start with the package name" +msgstr "" + +#: guix/scripts/lint.scm:366 +msgid "Texinfo markup in synopsis is invalid" +msgstr "" + +#: guix/scripts/lint.scm:385 +#, scheme-format +msgid "invalid synopsis: ~s" +msgstr "" + +#: guix/scripts/lint.scm:504 +#, scheme-format +msgid "URI ~a returned suspiciously small file (~a bytes)" +msgstr "" + +#: guix/scripts/lint.scm:514 +#, scheme-format +msgid "permanent redirect from ~a to ~a" +msgstr "" + +#: guix/scripts/lint.scm:521 +#, scheme-format +msgid "invalid permanent redirect from ~a" +msgstr "" + +#: guix/scripts/lint.scm:528 guix/scripts/lint.scm:540 +#, scheme-format +msgid "URI ~a not reachable: ~a (~s)" +msgstr "" + +#: guix/scripts/lint.scm:547 +#, scheme-format +msgid "URI ~a domain not found: ~a" +msgstr "" + +#: guix/scripts/lint.scm:555 +#, scheme-format +msgid "URI ~a unreachable: ~a" +msgstr "" + +#: guix/scripts/lint.scm:564 +#, scheme-format +msgid "TLS certificate error: ~a" +msgstr "" + +#: guix/scripts/lint.scm:585 +msgid "invalid value for home page" +msgstr "" + +#: guix/scripts/lint.scm:588 +#, scheme-format +msgid "invalid home page URL: ~s" +msgstr "" + +#: guix/scripts/lint.scm:614 +msgid "file names of patches should start with the package name" +msgstr "" + +#: guix/scripts/lint.scm:630 +#, scheme-format +msgid "~a: file name is too long" +msgstr "" + +#: guix/scripts/lint.scm:671 +#, scheme-format +msgid "~a: ~a: proposed synopsis: ~s~%" +msgstr "" + +#: guix/scripts/lint.scm:684 +#, scheme-format +msgid "~a: ~a: proposed description:~% \"~a\"~%" +msgstr "" + +#: guix/scripts/lint.scm:726 +msgid "all the source URIs are unreachable:" +msgstr "" + +#: guix/scripts/lint.scm:748 +msgid "the source file name should contain the package name" +msgstr "" + +#: guix/scripts/lint.scm:764 +#, scheme-format +msgid "URL should be 'mirror://~a/~a'" +msgstr "" + +#: guix/scripts/lint.scm:783 guix/scripts/lint.scm:788 +#, scheme-format +msgid "failed to create ~a derivation: ~a" +msgstr "" + +#: guix/scripts/lint.scm:805 +#, scheme-format +msgid "failed to create ~a derivation: ~s" +msgstr "" + +#: guix/scripts/lint.scm:817 +msgid "invalid license field" +msgstr "" + +#: guix/scripts/lint.scm:824 +#, scheme-format +msgid "~a: HTTP GET error for ~a: ~a (~s)~%" +msgstr "" + +#: guix/scripts/lint.scm:834 +#, scheme-format +msgid "~a: host lookup failure: ~a~%" +msgstr "" + +#: guix/scripts/lint.scm:839 +#, scheme-format +msgid "~a: TLS certificate error: ~a" +msgstr "" + +#: guix/scripts/lint.scm:854 +msgid "while retrieving CVE vulnerabilities" +msgstr "" + +#: guix/scripts/lint.scm:891 +#, scheme-format +msgid "probably vulnerable to ~a" +msgstr "" + +#: guix/scripts/lint.scm:898 +#, scheme-format +msgid "while retrieving upstream info for '~a'" +msgstr "" + +#: guix/scripts/lint.scm:906 +#, scheme-format +msgid "can be upgraded to ~a" +msgstr "" + +#: guix/scripts/lint.scm:921 +#, scheme-format +msgid "tabulation on line ~a, column ~a" +msgstr "" + +#: guix/scripts/lint.scm:930 +#, scheme-format +msgid "trailing white space on line ~a" +msgstr "" + +#: guix/scripts/lint.scm:940 +#, scheme-format +msgid "line ~a is way too long (~a characters)" +msgstr "" + +#: guix/scripts/lint.scm:951 +#, scheme-format +msgid "line ~a: parentheses feel lonely, move to the previous or next line" +msgstr "" + +#: guix/scripts/lint.scm:1021 +msgid "Validate package descriptions" +msgstr "" + +#: guix/scripts/lint.scm:1025 +msgid "Validate synopsis & description of GNU packages" +msgstr "" + +#: guix/scripts/lint.scm:1029 +msgid "Identify inputs that should be native inputs" +msgstr "" + +#: guix/scripts/lint.scm:1033 +msgid "Identify inputs that shouldn't be inputs at all" +msgstr "" + +#: guix/scripts/lint.scm:1037 +msgid "Validate file names and availability of patches" +msgstr "" + +#: guix/scripts/lint.scm:1041 +msgid "Validate home-page URLs" +msgstr "" + +#. TRANSLATORS: is the name of a data type and must not be +#. translated. +#: guix/scripts/lint.scm:1047 +msgid "Make sure the 'license' field is a or a list thereof" +msgstr "" + +#: guix/scripts/lint.scm:1052 +msgid "Validate source URLs" +msgstr "" + +#: guix/scripts/lint.scm:1056 +msgid "Suggest 'mirror://' URLs" +msgstr "" + +#: guix/scripts/lint.scm:1060 +msgid "Validate file names of sources" +msgstr "" + +#: guix/scripts/lint.scm:1064 +msgid "Report failure to compile a package to a derivation" +msgstr "" + +#: guix/scripts/lint.scm:1068 +msgid "Validate package synopses" +msgstr "" + +#: guix/scripts/lint.scm:1072 +msgid "Check the Common Vulnerabilities and Exposures (CVE) database" +msgstr "" + +#: guix/scripts/lint.scm:1077 +msgid "Check the package for new upstream releases" +msgstr "" + +#: guix/scripts/lint.scm:1081 +msgid "Look for formatting issues in the source" +msgstr "" + +#: guix/scripts/lint.scm:1109 +msgid "" +"Usage: guix lint [OPTION]... [PACKAGE]...\n" +"Run a set of checkers on the specified package; if none is specified,\n" +"run the checkers on all packages.\n" +msgstr "" + +#: guix/scripts/lint.scm:1112 +msgid "" +"\n" +" -c, --checkers=CHECKER1,CHECKER2...\n" +" only run the specified checkers" +msgstr "" + +#: guix/scripts/lint.scm:1117 +msgid "" +"\n" +" -l, --list-checkers display the list of available lint checkers" +msgstr "" + +#: guix/scripts/lint.scm:1137 +#, scheme-format +msgid "~a: invalid checker~%" +msgstr "" + +#: guix/scripts/publish.scm:68 +#, scheme-format +msgid "" +"Usage: guix publish [OPTION]...\n" +"Publish ~a over HTTP.\n" +msgstr "" + +#: guix/scripts/publish.scm:70 +msgid "" +"\n" +" -p, --port=PORT listen on PORT" +msgstr "" + +#: guix/scripts/publish.scm:72 +msgid "" +"\n" +" --listen=HOST listen on the network interface for HOST" +msgstr "" + +#: guix/scripts/publish.scm:74 +msgid "" +"\n" +" -u, --user=USER change privileges to USER as soon as possible" +msgstr "" + +#: guix/scripts/publish.scm:76 +msgid "" +"\n" +" -C, --compression[=LEVEL]\n" +" compress archives at LEVEL" +msgstr "" + +#: guix/scripts/publish.scm:79 +msgid "" +"\n" +" -c, --cache=DIRECTORY cache published items to DIRECTORY" +msgstr "" + +#: guix/scripts/publish.scm:81 +msgid "" +"\n" +" --workers=N use N workers to bake items" +msgstr "" + +#: guix/scripts/publish.scm:83 +msgid "" +"\n" +" --ttl=TTL announce narinfos can be cached for TTL seconds" +msgstr "" + +#: guix/scripts/publish.scm:85 +msgid "" +"\n" +" --nar-path=PATH use PATH as the prefix for nar URLs" +msgstr "" + +#: guix/scripts/publish.scm:87 +msgid "" +"\n" +" --public-key=FILE use FILE as the public key for signatures" +msgstr "" + +#: guix/scripts/publish.scm:89 +msgid "" +"\n" +" --private-key=FILE use FILE as the private key for signatures" +msgstr "" + +#: guix/scripts/publish.scm:91 +msgid "" +"\n" +" -r, --repl[=PORT] spawn REPL server on PORT" +msgstr "" + +#: guix/scripts/publish.scm:107 +#, scheme-format +msgid "lookup of host '~a' failed: ~a~%" +msgstr "" + +#: guix/scripts/publish.scm:152 +#, scheme-format +msgid "lookup of host '~a' returned nothing" +msgstr "" + +#: guix/scripts/publish.scm:165 +#, scheme-format +msgid "zlib support is missing; compression disabled~%" +msgstr "" + +#: guix/scripts/publish.scm:179 +#, scheme-format +msgid "~a: invalid duration~%" +msgstr "" + +#: guix/scripts/publish.scm:869 +#, scheme-format +msgid "user '~a' not found: ~a~%" +msgstr "" + +#: guix/scripts/publish.scm:910 +#, scheme-format +msgid "server running as root; consider using the '--user' option!~%" +msgstr "" + +#: guix/scripts/publish.scm:915 +#, scheme-format +msgid "publishing ~a on ~a, port ~d~%" +msgstr "" + +#: guix/scripts/edit.scm:41 +msgid "" +"Usage: guix edit PACKAGE...\n" +"Start $VISUAL or $EDITOR to edit the definitions of PACKAGE...\n" +msgstr "" + +#: guix/scripts/edit.scm:62 +#, scheme-format +msgid "file '~a' not found in search path ~s~%" +msgstr "" + +#: guix/scripts/edit.scm:90 +#, scheme-format +msgid "source location of package '~a' is unknown~%" +msgstr "" + +#: guix/scripts/edit.scm:103 +#, scheme-format +msgid "failed to launch '~a': ~a~%" +msgstr "" + +#: guix/scripts/size.scm:68 +#, scheme-format +msgid "no available substitute information for '~a'~%" +msgstr "" + +#: guix/scripts/size.scm:90 +msgid "store item" +msgstr "" + +#: guix/scripts/size.scm:90 +msgid "total" +msgstr "" + +#: guix/scripts/size.scm:90 +msgid "self" +msgstr "" + +#: guix/scripts/size.scm:98 +#, scheme-format +msgid "total: ~,1f MiB~%" +msgstr "" + +#. TRANSLATORS: This is the title of a graph, meaning that the graph +#. represents a profile of the store (the "store" being the place where +#. packages are stored.) +#: guix/scripts/size.scm:212 +msgid "store profile" +msgstr "" + +#: guix/scripts/size.scm:221 +msgid "" +"Usage: guix size [OPTION]... PACKAGE\n" +"Report the size of PACKAGE and its dependencies.\n" +msgstr "" + +#: guix/scripts/size.scm:226 +msgid "" +"\n" +" -s, --system=SYSTEM consider packages for SYSTEM--e.g., \"i686-linux\"" +msgstr "" + +#. TRANSLATORS: "closure" and "self" must not be translated. +#: guix/scripts/size.scm:229 +msgid "" +"\n" +" --sort=KEY sort according to KEY--\"closure\" or \"self\"" +msgstr "" + +#: guix/scripts/size.scm:231 +msgid "" +"\n" +" -m, --map-file=FILE write to FILE a graphical map of disk usage" +msgstr "" + +#: guix/scripts/size.scm:262 +#, scheme-format +msgid "~a: invalid sorting key~%" +msgstr "" + +#: guix/scripts/size.scm:297 +msgid "missing store item argument\n" +msgstr "" + +#: guix/scripts/graph.scm:87 +#, scheme-format +msgid "~a: invalid argument (package name expected)" +msgstr "" + +#: guix/scripts/graph.scm:98 +msgid "the DAG of packages, excluding implicit inputs" +msgstr "" + +#: guix/scripts/graph.scm:124 +msgid "the reverse DAG of packages" +msgstr "" + +#: guix/scripts/graph.scm:174 +msgid "the DAG of packages, including implicit inputs" +msgstr "" + +#: guix/scripts/graph.scm:184 +msgid "the DAG of packages and origins, including implicit inputs" +msgstr "" + +#: guix/scripts/graph.scm:214 +msgid "same as 'bag', but without the bootstrap nodes" +msgstr "" + +#: guix/scripts/graph.scm:256 +msgid "the DAG of derivations" +msgstr "" + +#: guix/scripts/graph.scm:268 +msgid "unsupported argument for derivation graph" +msgstr "" + +#: guix/scripts/graph.scm:294 +msgid "unsupported argument for this type of graph" +msgstr "" + +#: guix/scripts/graph.scm:307 +#, scheme-format +msgid "references for '~a' are not known~%" +msgstr "" + +#: guix/scripts/graph.scm:314 +msgid "the DAG of run-time dependencies (store references)" +msgstr "" + +#: guix/scripts/graph.scm:330 +msgid "the DAG of referrers in the store" +msgstr "" + +#: guix/scripts/graph.scm:360 +msgid "the graph of package modules" +msgstr "" + +#: guix/scripts/graph.scm:388 +#, scheme-format +msgid "~a: unknown node type~%" +msgstr "" + +#: guix/scripts/graph.scm:395 +#, scheme-format +msgid "~a: unknown backend~%" +msgstr "" + +#: guix/scripts/graph.scm:399 +msgid "The available node types are:\n" +msgstr "" + +#: guix/scripts/graph.scm:409 +msgid "The available backend types are:\n" +msgstr "" + +#. TRANSLATORS: Here 'dot' is the name of a program; it must not be +#. translated. +#: guix/scripts/graph.scm:457 +msgid "" +"Usage: guix graph PACKAGE...\n" +"Emit a representation of the dependency graph of PACKAGE...\n" +msgstr "" + +#: guix/scripts/graph.scm:459 +msgid "" +"\n" +" -b, --backend=TYPE produce a graph with the given backend TYPE" +msgstr "" + +#: guix/scripts/graph.scm:461 +msgid "" +"\n" +" --list-backends list the available graph backends" +msgstr "" + +#: guix/scripts/graph.scm:463 +msgid "" +"\n" +" -t, --type=TYPE represent nodes of the given TYPE" +msgstr "" + +#: guix/scripts/graph.scm:465 +msgid "" +"\n" +" --list-types list the available graph types" +msgstr "" + +#: guix/scripts/graph.scm:467 guix/scripts/pack.scm:710 +msgid "" +"\n" +" -e, --expression=EXPR consider the package EXPR evaluates to" +msgstr "" + +#: guix/scripts/graph.scm:469 +msgid "" +"\n" +" -s, --system=SYSTEM consider the graph for SYSTEM--e.g., \"i686-linux\"" +msgstr "" + +#: guix/scripts/challenge.scm:191 +#, scheme-format +msgid " local hash: ~a~%" +msgstr "" + +#: guix/scripts/challenge.scm:192 +#, scheme-format +msgid " no local build for '~a'~%" +msgstr "" + +#: guix/scripts/challenge.scm:194 +#, scheme-format +msgid " ~50a: ~a~%" +msgstr "" + +#: guix/scripts/challenge.scm:202 +#, scheme-format +msgid "~a contents differ:~%" +msgstr "" + +#: guix/scripts/challenge.scm:205 +#, scheme-format +msgid "could not challenge '~a': no local build~%" +msgstr "" + +#: guix/scripts/challenge.scm:207 +#, scheme-format +msgid "could not challenge '~a': no substitutes~%" +msgstr "" + +#: guix/scripts/challenge.scm:210 +#, scheme-format +msgid "~a contents match:~%" +msgstr "" + +#: guix/scripts/challenge.scm:219 +msgid "~h store items were analyzed:~%" +msgstr "" + +#: guix/scripts/challenge.scm:220 +msgid " - ~h (~,1f%) were identical~%" +msgstr "" + +#: guix/scripts/challenge.scm:222 +msgid " - ~h (~,1f%) differed~%" +msgstr "" + +#: guix/scripts/challenge.scm:224 +msgid " - ~h (~,1f%) were inconclusive~%" +msgstr "" + +#: guix/scripts/challenge.scm:233 +msgid "" +"Usage: guix challenge [PACKAGE...]\n" +"Challenge the substitutes for PACKAGE... provided by one or more servers.\n" +msgstr "" + +#: guix/scripts/challenge.scm:235 +msgid "" +"\n" +" --substitute-urls=URLS\n" +" compare build results with those at URLS" +msgstr "" + +#: guix/scripts/challenge.scm:238 +msgid "" +"\n" +" -v, --verbose show details about successful comparisons" +msgstr "" + +#: guix/scripts/copy.scm:59 +#, scheme-format +msgid "~a: invalid TCP port number~%" +msgstr "" + +#: guix/scripts/copy.scm:61 +#, scheme-format +msgid "~a: invalid SSH specification~%" +msgstr "" + +#: guix/scripts/copy.scm:113 +msgid "" +"Usage: guix copy [OPTION]... ITEMS...\n" +"Copy ITEMS to or from the specified host over SSH.\n" +msgstr "" + +#: guix/scripts/copy.scm:115 +msgid "" +"\n" +" --to=HOST send ITEMS to HOST" +msgstr "" + +#: guix/scripts/copy.scm:117 +msgid "" +"\n" +" --from=HOST receive ITEMS from HOST" +msgstr "" + +#: guix/scripts/copy.scm:169 +#, scheme-format +msgid "use '--to' or '--from'~%" +msgstr "" + +#: guix/scripts/pack.scm:93 +#, scheme-format +msgid "~a: compressor not found~%" +msgstr "" + +#: guix/scripts/pack.scm:504 +#, scheme-format +msgid "" +"cross-compilation not implemented here;\n" +"please email '~a'~%" +msgstr "" + +#: guix/scripts/pack.scm:615 +msgid "The supported formats for 'guix pack' are:" +msgstr "" + +#: guix/scripts/pack.scm:617 +msgid "" +"\n" +" tarball Self-contained tarball, ready to run on another machine" +msgstr "" + +#: guix/scripts/pack.scm:619 +msgid "" +"\n" +" squashfs Squashfs image suitable for Singularity" +msgstr "" + +#: guix/scripts/pack.scm:621 +msgid "" +"\n" +" docker Tarball ready for 'docker load'" +msgstr "" + +#: guix/scripts/pack.scm:678 +#, scheme-format +msgid "~a: invalid symlink specification~%" +msgstr "" + +#: guix/scripts/pack.scm:689 +#, scheme-format +msgid "~a: unsupported profile name~%" +msgstr "" + +#: guix/scripts/pack.scm:698 +msgid "" +"Usage: guix pack [OPTION]... PACKAGE...\n" +"Create a bundle of PACKAGE.\n" +msgstr "" + +#: guix/scripts/pack.scm:704 +msgid "" +"\n" +" -f, --format=FORMAT build a pack in the given FORMAT" +msgstr "" + +#: guix/scripts/pack.scm:706 +msgid "" +"\n" +" --list-formats list the formats available" +msgstr "" + +#: guix/scripts/pack.scm:708 +msgid "" +"\n" +" -R, --relocatable produce relocatable executables" +msgstr "" + +#: guix/scripts/pack.scm:716 +msgid "" +"\n" +" -C, --compression=TOOL compress using TOOL--e.g., \"lzip\"" +msgstr "" + +#: guix/scripts/pack.scm:718 +msgid "" +"\n" +" -S, --symlink=SPEC create symlinks to the profile according to SPEC" +msgstr "" + +#: guix/scripts/pack.scm:720 +msgid "" +"\n" +" -m, --manifest=FILE create a pack with the manifest from FILE" +msgstr "" + +#: guix/scripts/pack.scm:722 +msgid "" +"\n" +" --localstatedir include /var/guix in the resulting pack" +msgstr "" + +#: guix/scripts/pack.scm:724 +msgid "" +"\n" +" --profile-name=NAME\n" +" populate /var/guix/profiles/.../NAME" +msgstr "" + +#: guix/scripts/pack.scm:727 +msgid "" +"\n" +" --bootstrap use the bootstrap binaries to build the pack" +msgstr "" + +#: guix/scripts/pack.scm:769 +#, scheme-format +msgid "both a manifest and a package list were given~%" +msgstr "" + +#: guix/scripts/pack.scm:814 +#, scheme-format +msgid "~a: unknown pack format~%" +msgstr "" + +#: guix/scripts/weather.scm:73 +msgid "computing ~h package derivations for ~a...~%" +msgstr "" + +#: guix/scripts/weather.scm:162 +msgid "looking for ~h store items on ~a...~%" +msgstr "" + +#: guix/scripts/weather.scm:174 +msgid " ~2,1f% substitutes available (~h out of ~h)~%" +msgstr "" + +#: guix/scripts/weather.scm:180 +#, scheme-format +msgid " unknown substitute sizes~%" +msgstr "" + +#: guix/scripts/weather.scm:183 +msgid " ~,1h MiB of nars (compressed)~%" +msgstr "" + +#: guix/scripts/weather.scm:184 +msgid " at least ~,1h MiB of nars (compressed)~%" +msgstr "" + +#: guix/scripts/weather.scm:186 +msgid " ~,1h MiB on disk (uncompressed)~%" +msgstr "" + +#: guix/scripts/weather.scm:188 +msgid " ~,3h seconds per request (~,1h seconds in total)~%" +msgstr "" + +#: guix/scripts/weather.scm:190 +msgid " ~,1h requests per second~%" +msgstr "" + +#: guix/scripts/weather.scm:196 +#, scheme-format +msgid " (continuous integration information unavailable)~%" +msgstr "" + +#: guix/scripts/weather.scm:199 +#, scheme-format +msgid " '~a' returned ~a (~s)~%" +msgstr "" + +#: guix/scripts/weather.scm:216 +msgid " ~,1f% (~h out of ~h) of the missing items are queued~%" +msgstr "" + +#: guix/scripts/weather.scm:222 +msgid " at least ~h queued builds~%" +msgstr "" + +#: guix/scripts/weather.scm:223 +msgid " ~h queued builds~%" +msgstr "" + +#: guix/scripts/weather.scm:226 +#, scheme-format +msgid " ~a: ~a (~0,1f%)~%" +msgstr "" + +#: guix/scripts/weather.scm:232 +#, scheme-format +msgid " build rate: ~1,2f builds per hour~%" +msgstr "" + +#: guix/scripts/weather.scm:236 +#, scheme-format +msgid " ~a: ~,2f builds per hour~%" +msgstr "" + +#: guix/scripts/weather.scm:248 +msgid "" +"Usage: guix weather [OPTIONS]\n" +"Report the availability of substitutes.\n" +msgstr "" + +#: guix/scripts/weather.scm:250 +msgid "" +"\n" +" --substitute-urls=URLS\n" +" check for available substitutes at URLS" +msgstr "" + +#: guix/scripts/weather.scm:253 +msgid "" +"\n" +" -m, --manifest=MANIFEST\n" +" look up substitutes for packages specified in MANIFEST" +msgstr "" + +#: guix/scripts/weather.scm:256 +msgid "" +"\n" +" -s, --system=SYSTEM consider substitutes for SYSTEM--e.g., \"i686-linux\"" +msgstr "" + +#: guix/scripts/weather.scm:280 +#, scheme-format +msgid "~a: invalid URL~%" +msgstr "" + +#: guix/scripts/describe.scm:45 +#, scheme-format +msgid "~a: unsupported output format~%" +msgstr "" + +#: guix/scripts/describe.scm:64 +msgid "" +"Usage: guix describe [OPTION]...\n" +"Display information about the channels currently in use.\n" +msgstr "" + +#: guix/scripts/describe.scm:66 +msgid "" +"\n" +" -f, --format=FORMAT display information in the given FORMAT" +msgstr "" + +#: guix/scripts/describe.scm:68 +msgid "" +"\n" +" -p, --profile=PROFILE display information about PROFILE" +msgstr "" + +#: guix/scripts/describe.scm:87 +#, scheme-format +msgid "~%;; warning: GUIX_PACKAGE_PATH=\"~a\"~%" +msgstr "" + +#: guix/scripts/describe.scm:115 +#, scheme-format +msgid "failed to determine origin~%" +msgstr "" + +#: guix/scripts/describe.scm:121 +#, scheme-format +msgid "Git checkout:~%" +msgstr "" + +#: guix/scripts/describe.scm:122 +#, scheme-format +msgid " repository: ~a~%" +msgstr "" + +#: guix/scripts/describe.scm:123 +#, scheme-format +msgid " branch: ~a~%" +msgstr "" + +#: guix/scripts/describe.scm:124 +#, scheme-format +msgid " commit: ~a~%" +msgstr "" + +#: guix/scripts/processes.scm:197 +msgid "" +"Usage: guix processes\n" +"List the current Guix sessions and their processes." +msgstr "" + +#: guix/gnu-maintenance.scm:661 +msgid "Updater for GNU packages" +msgstr "" + +#: guix/gnu-maintenance.scm:670 +msgid "Updater for GNU packages only available via FTP" +msgstr "" + +#: guix/gnu-maintenance.scm:679 +msgid "Updater for KDE packages" +msgstr "" + +#: guix/gnu-maintenance.scm:686 +msgid "Updater for X.org packages" +msgstr "" + +#: guix/gnu-maintenance.scm:693 +msgid "Updater for packages hosted on kernel.org" +msgstr "" + +#: guix/scripts/container.scm:26 +msgid "" +"Usage: guix container ACTION ARGS...\n" +"Build and manipulate Linux containers.\n" +msgstr "" + +#: guix/scripts/container.scm:31 +msgid " exec execute a command inside of an existing container\n" +msgstr "" + +#: guix/scripts/container.scm:54 +#, scheme-format +msgid "guix container: missing action~%" +msgstr "" + +#: guix/scripts/container.scm:64 +#, scheme-format +msgid "guix container: invalid action~%" +msgstr "" + +#: guix/scripts/container/exec.scm:40 +msgid "" +"Usage: guix container exec PID COMMAND [ARGS...]\n" +"Execute COMMMAND within the container process PID.\n" +msgstr "" + +#: guix/scripts/container/exec.scm:69 +#, scheme-format +msgid "~a: extraneous argument~%" +msgstr "" + +#: guix/scripts/container/exec.scm:87 +#, scheme-format +msgid "no pid specified~%" +msgstr "" + +#: guix/scripts/container/exec.scm:90 +#, scheme-format +msgid "no command specified~%" +msgstr "" + +#: guix/scripts/container/exec.scm:93 +#, scheme-format +msgid "no such process ~d~%" +msgstr "" + +#: guix/scripts/container/exec.scm:105 +#, scheme-format +msgid "exec failed with status ~d~%" +msgstr "" + +#: guix/upstream.scm:250 +#, scheme-format +msgid "signature verification failed for `~a'~%" +msgstr "" + +#: guix/upstream.scm:252 +#, scheme-format +msgid "(could be because the public key is not in your keyring)~%" +msgstr "" + +#: guix/upstream.scm:337 +#, scheme-format +msgid "~a: could not locate source file" +msgstr "" + +#: guix/upstream.scm:342 +#, scheme-format +msgid "~a: ~a: no `version' field in source; skipping~%" +msgstr "" + +#: guix/ui.scm:175 +#, scheme-format +msgid "error: ~a: unbound variable" +msgstr "" + +#: guix/ui.scm:271 +msgid "entering debugger; type ',bt' for a backtrace\n" +msgstr "" + +#: guix/ui.scm:320 +#, scheme-format +msgid "hint: ~a~%" +msgstr "" + +#: guix/ui.scm:336 +msgid "Did you forget a @code{use-modules} form?" +msgstr "" + +#: guix/ui.scm:338 +#, scheme-format +msgid "Did you forget @code{(use-modules ~a)}?" +msgstr "" + +#: guix/ui.scm:347 guix/ui.scm:387 guix/ui.scm:394 +#, scheme-format +msgid "failed to load '~a': ~a~%" +msgstr "" + +#: guix/ui.scm:354 +#, scheme-format +msgid "~amissing closing parenthesis~%" +msgstr "" + +#: guix/ui.scm:359 guix/ui.scm:367 guix/ui.scm:714 +#, scheme-format +msgid "~a: error: ~a~%" +msgstr "" + +#: guix/ui.scm:374 guix/ui.scm:784 +#, scheme-format +msgid "exception thrown: ~s~%" +msgstr "" + +#: guix/ui.scm:378 guix/ui.scm:400 +#, scheme-format +msgid "failed to load '~a':~%" +msgstr "" + +#: guix/ui.scm:390 +#, scheme-format +msgid "~a: warning: ~a~%" +msgstr "" + +#: guix/ui.scm:397 +#, scheme-format +msgid "failed to load '~a': exception thrown: ~s~%" +msgstr "" + +#: guix/ui.scm:433 +#, scheme-format +msgid "failed to install locale: ~a~%" +msgstr "" + +#: guix/ui.scm:435 +msgid "" +"Consider installing the @code{glibc-utf8-locales} or\n" +"@code{glibc-locales} package and defining @code{GUIX_LOCPATH}, along these\n" +"lines:\n" +"\n" +"@example\n" +"guix package -i glibc-utf8-locales\n" +"export GUIX_LOCPATH=\"$HOME/.guix-profile/lib/locale\"\n" +"@end example\n" +"\n" +"See the \"Application Setup\" section in the manual, for more info.\n" +msgstr "" + +#. TRANSLATORS: Translate "(C)" to the copyright symbol +#. (C-in-a-circle), if this symbol is available in the user's +#. locale. Otherwise, do not translate "(C)"; leave it as-is. */ +#: guix/ui.scm:473 +msgid "(C)" +msgstr "" + +#: guix/ui.scm:474 +msgid "the Guix authors\n" +msgstr "" + +#: guix/ui.scm:475 +msgid "" +"License GPLv3+: GNU GPL version 3 or later \n" +"This is free software: you are free to change and redistribute it.\n" +"There is NO WARRANTY, to the extent permitted by law.\n" +msgstr "" + +#. TRANSLATORS: The placeholder indicates the bug-reporting address for this +#. package. Please add another line saying "Report translation bugs to +#. ...\n" with the address for translation bugs (typically your translation +#. team's web or email address). +#: guix/ui.scm:487 +#, scheme-format +msgid "" +"\n" +"Report bugs to: ~a." +msgstr "" + +#: guix/ui.scm:489 +#, scheme-format +msgid "" +"\n" +"~a home page: <~a>" +msgstr "" + +#: guix/ui.scm:491 +msgid "" +"\n" +"General help using GNU software: " +msgstr "" + +#: guix/ui.scm:539 +#, scheme-format +msgid "'~a' is not a valid regular expression: ~a~%" +msgstr "" + +#: guix/ui.scm:545 +#, scheme-format +msgid "~a: invalid number~%" +msgstr "" + +#: guix/ui.scm:562 +#, scheme-format +msgid "invalid number: ~a~%" +msgstr "" + +#: guix/ui.scm:585 +#, scheme-format +msgid "unknown unit: ~a~%" +msgstr "" + +#: guix/ui.scm:600 +#, scheme-format +msgid "" +"You cannot have two different versions\n" +"or variants of @code{~a} in the same profile." +msgstr "" + +#: guix/ui.scm:603 +#, scheme-format +msgid "" +"Try upgrading both @code{~a} and @code{~a},\n" +"or remove one of them from the profile." +msgstr "" + +#: guix/ui.scm:622 +#, scheme-format +msgid "~a:~a:~a: package `~a' has an invalid input: ~s~%" +msgstr "" + +#: guix/ui.scm:629 +#, scheme-format +msgid "~a: ~a: build system `~a' does not support cross builds~%" +msgstr "" + +#: guix/ui.scm:635 +#, scheme-format +msgid "~s: invalid G-expression input~%" +msgstr "" + +#: guix/ui.scm:638 +#, scheme-format +msgid "profile '~a' does not exist~%" +msgstr "" + +#: guix/ui.scm:641 +#, scheme-format +msgid "generation ~a of profile '~a' does not exist~%" +msgstr "" + +#: guix/ui.scm:650 +#, scheme-format +msgid " ... propagated from ~a@~a~%" +msgstr "" + +#: guix/ui.scm:660 +#, scheme-format +msgid "profile contains conflicting entries for ~a~a~%" +msgstr "" + +#: guix/ui.scm:663 +#, scheme-format +msgid " first entry: ~a@~a~a ~a~%" +msgstr "" + +#: guix/ui.scm:669 +#, scheme-format +msgid " second entry: ~a@~a~a ~a~%" +msgstr "" + +#: guix/ui.scm:681 +#, scheme-format +msgid "corrupt input while restoring '~a' from ~s~%" +msgstr "" + +#: guix/ui.scm:683 +#, scheme-format +msgid "corrupt input while restoring archive from ~s~%" +msgstr "" + +#: guix/ui.scm:686 +#, scheme-format +msgid "failed to connect to `~a': ~a~%" +msgstr "" + +#: guix/ui.scm:691 +#, scheme-format +msgid "build failed: ~a~%" +msgstr "" + +#: guix/ui.scm:694 +#, scheme-format +msgid "reference to invalid output '~a' of derivation '~a'~%" +msgstr "" + +#: guix/ui.scm:698 +#, scheme-format +msgid "file '~a' could not be found in these directories:~{ ~a~}~%" +msgstr "" + +#: guix/ui.scm:703 +#, scheme-format +msgid "program exited~@[ with non-zero exit status ~a~]~@[ terminated by signal ~a~]~@[ stopped by signal ~a~]: ~s~%" +msgstr "" + +#: guix/ui.scm:734 +#, scheme-format +msgid "~a: ~a~%" +msgstr "" + +#: guix/ui.scm:769 +#, scheme-format +msgid "failed to read expression ~s: ~s~%" +msgstr "" + +#: guix/ui.scm:775 +#, scheme-format +msgid "failed to evaluate expression '~a':~%" +msgstr "" + +#: guix/ui.scm:778 +#, scheme-format +msgid "syntax error: ~a~%" +msgstr "" + +#: guix/ui.scm:796 +#, scheme-format +msgid "expression ~s does not evaluate to a package~%" +msgstr "" + +#: guix/ui.scm:816 +msgid "at least ~,1h MB needed but only ~,1h MB available in ~a~%" +msgstr "" + +#: guix/ui.scm:894 +#, scheme-format +msgid "~:[The following derivation would be built:~%~{ ~a~%~}~;~]" +msgid_plural "~:[The following derivations would be built:~%~{ ~a~%~}~;~]" +msgstr[0] "" +msgstr[1] "" + +#. TRANSLATORS: "MB" is for "megabyte"; it should be +#. translated to the corresponding abbreviation. +#: guix/ui.scm:902 +msgid "~:[~,1h MB would be downloaded:~%~{ ~a~%~}~;~]" +msgstr "" + +#: guix/ui.scm:907 +#, scheme-format +msgid "~:[The following file would be downloaded:~%~{ ~a~%~}~;~]" +msgid_plural "~:[The following files would be downloaded:~%~{ ~a~%~}~;~]" +msgstr[0] "" +msgstr[1] "" + +#: guix/ui.scm:913 +#, scheme-format +msgid "~:[The following graft would be made:~%~{ ~a~%~}~;~]" +msgid_plural "~:[The following grafts would be made:~%~{ ~a~%~}~;~]" +msgstr[0] "" +msgstr[1] "" + +#: guix/ui.scm:919 +#, scheme-format +msgid "~:[The following derivation will be built:~%~{ ~a~%~}~;~]" +msgid_plural "~:[The following derivations will be built:~%~{ ~a~%~}~;~]" +msgstr[0] "" +msgstr[1] "" + +#. TRANSLATORS: "MB" is for "megabyte"; it should be +#. translated to the corresponding abbreviation. +#: guix/ui.scm:927 +msgid "~:[~,1h MB will be downloaded:~%~{ ~a~%~}~;~]" +msgstr "" + +#: guix/ui.scm:932 +#, scheme-format +msgid "~:[The following file will be downloaded:~%~{ ~a~%~}~;~]" +msgid_plural "~:[The following files will be downloaded:~%~{ ~a~%~}~;~]" +msgstr[0] "" +msgstr[1] "" + +#: guix/ui.scm:938 +#, scheme-format +msgid "~:[The following graft will be made:~%~{ ~a~%~}~;~]" +msgid_plural "~:[The following grafts will be made:~%~{ ~a~%~}~;~]" +msgstr[0] "" +msgstr[1] "" + +#: guix/ui.scm:997 +#, scheme-format +msgid "The following package would be removed:~%~{~a~%~}~%" +msgid_plural "The following packages would be removed:~%~{~a~%~}~%" +msgstr[0] "" +msgstr[1] "" + +#: guix/ui.scm:1002 +#, scheme-format +msgid "The following package will be removed:~%~{~a~%~}~%" +msgid_plural "The following packages will be removed:~%~{~a~%~}~%" +msgstr[0] "" +msgstr[1] "" + +#: guix/ui.scm:1015 +#, scheme-format +msgid "The following package would be downgraded:~%~{~a~%~}~%" +msgid_plural "The following packages would be downgraded:~%~{~a~%~}~%" +msgstr[0] "" +msgstr[1] "" + +#: guix/ui.scm:1020 +#, scheme-format +msgid "The following package will be downgraded:~%~{~a~%~}~%" +msgid_plural "The following packages will be downgraded:~%~{~a~%~}~%" +msgstr[0] "" +msgstr[1] "" + +#: guix/ui.scm:1033 +#, scheme-format +msgid "The following package would be upgraded:~%~{~a~%~}~%" +msgid_plural "The following packages would be upgraded:~%~{~a~%~}~%" +msgstr[0] "" +msgstr[1] "" + +#: guix/ui.scm:1038 +#, scheme-format +msgid "The following package will be upgraded:~%~{~a~%~}~%" +msgid_plural "The following packages will be upgraded:~%~{~a~%~}~%" +msgstr[0] "" +msgstr[1] "" + +#: guix/ui.scm:1049 +#, scheme-format +msgid "The following package would be installed:~%~{~a~%~}~%" +msgid_plural "The following packages would be installed:~%~{~a~%~}~%" +msgstr[0] "" +msgstr[1] "" + +#: guix/ui.scm:1054 +#, scheme-format +msgid "The following package will be installed:~%~{~a~%~}~%" +msgid_plural "The following packages will be installed:~%~{~a~%~}~%" +msgstr[0] "" +msgstr[1] "" + +#: guix/ui.scm:1071 +msgid "" +msgstr "" + +#: guix/ui.scm:1436 +#, scheme-format +msgid "Generation ~a\t~a" +msgstr "" + +#. TRANSLATORS: This is a format-string for date->string. +#. Please choose a format that corresponds to the +#. usual way of presenting dates in your locale. +#. See https://www.gnu.org/software/guile/manual/html_node/SRFI_002d19-Date-to-string.html +#. for details. +#: guix/ui.scm:1445 +#, scheme-format +msgid "~b ~d ~Y ~T" +msgstr "" + +#. TRANSLATORS: The word "current" here is an adjective for +#. "Generation", as in "current generation". Use the appropriate +#. gender where applicable. +#: guix/ui.scm:1451 +#, scheme-format +msgid "~a\t(current)~%" +msgstr "" + +#: guix/ui.scm:1494 +#, scheme-format +msgid "switched from generation ~a to ~a~%" +msgstr "" + +#: guix/ui.scm:1510 +#, scheme-format +msgid "deleting ~a~%" +msgstr "" + +#: guix/ui.scm:1541 +#, scheme-format +msgid "Try `guix --help' for more information.~%" +msgstr "" + +#: guix/ui.scm:1569 +msgid "" +"Usage: guix COMMAND ARGS...\n" +"Run COMMAND with ARGS.\n" +msgstr "" + +#: guix/ui.scm:1572 +msgid "COMMAND must be one of the sub-commands listed below:\n" +msgstr "" + +#: guix/ui.scm:1592 +#, scheme-format +msgid "guix: ~a: command not found~%" +msgstr "" + +#: guix/ui.scm:1622 +#, scheme-format +msgid "guix: missing command name~%" +msgstr "" + +#: guix/ui.scm:1630 +#, scheme-format +msgid "guix: unrecognized option '~a'~%" +msgstr "" + +#: guix/status.scm:335 +#, scheme-format +msgid "applying ~a graft for ~a..." +msgid_plural "applying ~a grafts for ~a..." +msgstr[0] "" +msgstr[1] "" + +#: guix/status.scm:340 +#, scheme-format +msgid "building ~a..." +msgstr "" + +#: guix/status.scm:344 +#, scheme-format +msgid "successfully built ~a" +msgstr "" + +#: guix/status.scm:350 +#, scheme-format +msgid "The following build is still in progress:~%~{ ~a~%~}~%" +msgid_plural "The following builds are still in progress:~%~{ ~a~%~}~%" +msgstr[0] "" +msgstr[1] "" + +#: guix/status.scm:355 +#, scheme-format +msgid "build of ~a failed" +msgstr "" + +#: guix/status.scm:359 +#, scheme-format +msgid "Could not find build log for '~a'." +msgstr "" + +#: guix/status.scm:362 +#, scheme-format +msgid "View build log at '~a'." +msgstr "" + +#: guix/status.scm:366 +#, scheme-format +msgid "substituting ~a..." +msgstr "" + +#: guix/status.scm:369 +#, scheme-format +msgid "downloading from ~a..." +msgstr "" + +#: guix/status.scm:394 +#, scheme-format +msgid "substitution of ~a complete" +msgstr "" + +#: guix/status.scm:397 +#, scheme-format +msgid "substitution of ~a failed" +msgstr "" + +#. TRANSLATORS: The final string looks like "sha256 hash mismatch for +#. /gnu/store/…-sth:", where "sha256" is the hash algorithm. +#: guix/status.scm:402 +#, scheme-format +msgid "~a hash mismatch for ~a:" +msgstr "" + +#: guix/status.scm:404 +#, scheme-format +msgid "" +" expected hash: ~a\n" +" actual hash: ~a~%" +msgstr "" + +#: guix/status.scm:409 +#, scheme-format +msgid "offloading build of ~a to '~a'" +msgstr "" + +#: guix/http-client.scm:117 +#, scheme-format +msgid "following redirection to `~a'...~%" +msgstr "" + +#: guix/http-client.scm:129 +#, scheme-format +msgid "~a: HTTP download failed: ~a (~s)" +msgstr "" + +#: guix/nar.scm:157 +msgid "signature is not a valid s-expression" +msgstr "" + +#: guix/nar.scm:166 +msgid "invalid signature" +msgstr "" + +#: guix/nar.scm:170 +msgid "invalid hash" +msgstr "" + +#: guix/nar.scm:178 +msgid "unauthorized public key" +msgstr "" + +#: guix/nar.scm:183 +msgid "corrupt signature data" +msgstr "" + +#: guix/nar.scm:203 +msgid "corrupt file set archive" +msgstr "" + +#: guix/nar.scm:213 +#, scheme-format +msgid "importing file or directory '~a'...~%" +msgstr "" + +#: guix/nar.scm:224 +#, scheme-format +msgid "found valid signature for '~a'~%" +msgstr "" + +#: guix/nar.scm:231 +msgid "imported file lacks a signature" +msgstr "" + +#: guix/nar.scm:270 +msgid "invalid inter-file archive mark" +msgstr "" + +#: guix/channels.scm:108 +#, scheme-format +msgid "Updating channel '~a' from Git repository at '~a'...~%" +msgstr "" + +#: guix/profiles.scm:501 +msgid "unsupported manifest format" +msgstr "" + +#: guix/profiles.scm:1630 +#, scheme-format +msgid "while creating directory `~a': ~a" +msgstr "" + +#: guix/profiles.scm:1635 +#, scheme-format +msgid "Please create the @file{~a} directory, with you as the owner." +msgstr "" + +#: guix/profiles.scm:1644 +#, scheme-format +msgid "directory `~a' is not owned by you" +msgstr "" + +#: guix/profiles.scm:1648 +#, scheme-format +msgid "Please change the owner of @file{~a} to user ~s." +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:66 +msgid "guix-daemon -- perform derivation builds and store accesses" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:68 +msgid "This program is a daemon meant to run in the background. It serves requests sent over a Unix-domain socket. It accesses the store, and builds derivations on behalf of its clients." +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:95 +msgid "SYSTEM" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:96 +msgid "assume SYSTEM as the current system type" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:97 nix/nix-daemon/guix-daemon.cc:100 +msgid "N" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:98 +msgid "use N CPU cores to build each derivation; 0 means as many as available" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:101 +msgid "allow at most N build jobs" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:102 nix/nix-daemon/guix-daemon.cc:104 +msgid "SECONDS" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:103 +msgid "mark builds as failed after SECONDS of activity" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:105 +msgid "mark builds as failed after SECONDS of silence" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:107 +msgid "disable chroot builds" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:108 +msgid "DIR" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:109 +msgid "add DIR to the build chroot" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:110 +msgid "GROUP" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:111 +msgid "perform builds as a user of GROUP" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:113 +msgid "do not use substitutes" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:114 +msgid "URLS" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:115 +msgid "use URLS as the default list of substitute providers" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:117 +msgid "do not use the 'build hook'" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:119 +msgid "cache build failures" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:121 +msgid "build each derivation N times in a row" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:123 +msgid "do not keep build logs" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:126 +msgid "disable compression of the build logs" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:128 +msgid "use the specified compression type for build logs" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:133 +msgid "disable automatic file \"deduplication\" in the store" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:143 +msgid "impersonate Linux 2.6" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:147 +msgid "tell whether the GC must keep outputs of live derivations" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:150 +msgid "tell whether the GC must keep derivations corresponding to live outputs" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:153 +msgid "SOCKET" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:154 +msgid "listen for connections on SOCKET" +msgstr "" + +#: nix/nix-daemon/guix-daemon.cc:156 +msgid "produce debugging output" +msgstr "" From 7850fa891dfc3a1c727b62d44e60562bc7f39c44 Mon Sep 17 00:00:00 2001 From: Mark H Weaver Date: Wed, 6 Mar 2019 17:49:26 -0500 Subject: [PATCH 032/194] gnu: linux-libre@4.9: Update to 4.9.162. * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.162. --- gnu/packages/linux.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index 3bb7ce8f82..047fd1ce3e 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -452,8 +452,8 @@ It has been modified to remove all non-free binary blobs.") #:configuration-file kernel-config)) (define-public linux-libre-4.9 - (make-linux-libre "4.9.161" - "0r35qlc8yj9svryv0v91j134vr35d23sz5aj7f2h8c99iakbm6zw" + (make-linux-libre "4.9.162" + "07swv6xvjsl5nv5y3sc2nfdnmqdz9gjy8hgrjvi0bljwzf1fbxmy" '("x86_64-linux" "i686-linux") #:configuration-file kernel-config)) From 1b1a6c028b373c8494f86ca0f8f24004f13c2375 Mon Sep 17 00:00:00 2001 From: Mark H Weaver Date: Wed, 6 Mar 2019 17:50:21 -0500 Subject: [PATCH 033/194] gnu: linux-libre@4.14: Update to 4.14.105. * gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.105. (%linux-libre-4.14-hash): Update hash. --- gnu/packages/linux.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index 047fd1ce3e..dcb70101b6 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -442,8 +442,8 @@ It has been modified to remove all non-free binary blobs.") #:patches %linux-libre-4.19-patches #:configuration-file kernel-config)) -(define %linux-libre-4.14-version "4.14.104") -(define %linux-libre-4.14-hash "0x7jzazl0yzdc9m1ycwcywjpj6w30mabks4qs9asdy5622282b4v") +(define %linux-libre-4.14-version "4.14.105") +(define %linux-libre-4.14-hash "06pp13d2g0j2v8jy8fh20b4ismzg9wn3i7bnx2hpyvslz256rrgg") (define-public linux-libre-4.14 (make-linux-libre %linux-libre-4.14-version From 9870f3ec615b65f518ac6d1133ec868b043f553d Mon Sep 17 00:00:00 2001 From: Mark H Weaver Date: Wed, 6 Mar 2019 17:51:12 -0500 Subject: [PATCH 034/194] gnu: linux-libre@4.19: Update to 4.19.27. * gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.27. (%linux-libre-4.19-hash): Update hash. --- gnu/packages/linux.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index dcb70101b6..bc9bf154b4 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -428,8 +428,8 @@ It has been modified to remove all non-free binary blobs.") #:patches %linux-libre-4.20-patches #:configuration-file kernel-config)) -(define %linux-libre-4.19-version "4.19.26") -(define %linux-libre-4.19-hash "0xp1hqcwimyvzzbci741vymc8mrgk3cycv8l020zas1dfw5wn48c") +(define %linux-libre-4.19-version "4.19.27") +(define %linux-libre-4.19-hash "055n4s4yrkcrwkdsxbf1q1zyxmpabf7kba8d0phpfadian3wr4s0") (define %linux-libre-4.19-patches (list %boot-logo-patch From 274fa491001c365cf704beb6ec9e7697df663252 Mon Sep 17 00:00:00 2001 From: Mark H Weaver Date: Tue, 5 Mar 2019 01:06:48 -0500 Subject: [PATCH 035/194] gnu: linux-libre: Update to 5.0. * gnu/packages/linux.scm (%linux-libre-version): Update to 5.0. (%linux-libre-hash): Update hash. (%linux-libre-4.20-patches): Rename to ... (%linux-libre-5.0-patches): ... this. (linux-libre, linux-libre-arm-generic, linux-libre-arm-omap2plus): Use %linux-libre-5.0-patches instead of %linux-libre-4.20-patches. * gnu/packages/aux-files/linux-libre/4.20-arm.conf, gnu/packages/aux-files/linux-libre/4.20-arm64.conf, gnu/packages/aux-files/linux-libre/4.20-i686.conf, gnu/packages/aux-files/linux-libre/4.20-x86_64.conf: Delete files. * gnu/packages/aux-files/linux-libre/5.0-arm.conf, gnu/packages/aux-files/linux-libre/5.0-arm64.conf, gnu/packages/aux-files/linux-libre/5.0-i686.conf, gnu/packages/aux-files/linux-libre/5.0-x86_64.conf: New files. * Makefile.am (AUX_FILES): Adjust accordingly. --- Makefile.am | 10 +- .../{4.20-arm.conf => 5.0-arm.conf} | 296 ++++++++----- .../{4.20-arm64.conf => 5.0-arm64.conf} | 418 ++++++++++++------ .../{4.20-i686.conf => 5.0-i686.conf} | 342 +++++++------- .../{4.20-x86_64.conf => 5.0-x86_64.conf} | 330 ++++++++------ gnu/packages/linux.scm | 12 +- 6 files changed, 852 insertions(+), 556 deletions(-) rename gnu/packages/aux-files/linux-libre/{4.20-arm.conf => 5.0-arm.conf} (98%) rename gnu/packages/aux-files/linux-libre/{4.20-arm64.conf => 5.0-arm64.conf} (97%) rename gnu/packages/aux-files/linux-libre/{4.20-i686.conf => 5.0-i686.conf} (99%) rename gnu/packages/aux-files/linux-libre/{4.20-x86_64.conf => 5.0-x86_64.conf} (99%) diff --git a/Makefile.am b/Makefile.am index 6caf588754..2abafd13e8 100644 --- a/Makefile.am +++ b/Makefile.am @@ -3,7 +3,7 @@ # Copyright © 2013 Andreas Enge # Copyright © 2015, 2017 Alex Kost # Copyright © 2016, 2018 Mathieu Lirzin -# Copyright © 2016, 2017, 2018 Mark H Weaver +# Copyright © 2016, 2017, 2018, 2019 Mark H Weaver # Copyright © 2017 Mathieu Othacehe # Copyright © 2017 Leo Famulari # Copyright © 2017 Ricardo Wurmus @@ -283,10 +283,10 @@ dist_noinst_DATA = guix/tests.scm guix/tests/http.scm AUX_FILES = \ gnu/packages/aux-files/chromium/master-preferences.json \ gnu/packages/aux-files/emacs/guix-emacs.el \ - gnu/packages/aux-files/linux-libre/4.20-arm.conf \ - gnu/packages/aux-files/linux-libre/4.20-arm64.conf \ - gnu/packages/aux-files/linux-libre/4.20-i686.conf \ - gnu/packages/aux-files/linux-libre/4.20-x86_64.conf \ + gnu/packages/aux-files/linux-libre/5.0-arm.conf \ + gnu/packages/aux-files/linux-libre/5.0-arm64.conf \ + gnu/packages/aux-files/linux-libre/5.0-i686.conf \ + gnu/packages/aux-files/linux-libre/5.0-x86_64.conf \ gnu/packages/aux-files/linux-libre/4.19-arm.conf \ gnu/packages/aux-files/linux-libre/4.19-arm64.conf \ gnu/packages/aux-files/linux-libre/4.19-i686.conf \ diff --git a/gnu/packages/aux-files/linux-libre/4.20-arm.conf b/gnu/packages/aux-files/linux-libre/5.0-arm.conf similarity index 98% rename from gnu/packages/aux-files/linux-libre/4.20-arm.conf rename to gnu/packages/aux-files/linux-libre/5.0-arm.conf index 514a6d4748..c9dc41013e 100644 --- a/gnu/packages/aux-files/linux-libre/4.20-arm.conf +++ b/gnu/packages/aux-files/linux-libre/5.0-arm.conf @@ -1,6 +1,6 @@ # # Automatically generated file; DO NOT EDIT. -# Linux/arm 4.20.0-gnu Kernel Configuration +# Linux/arm 5.0.0-gnu Kernel Configuration # # @@ -9,6 +9,7 @@ CONFIG_CC_IS_GCC=y CONFIG_GCC_VERSION=70400 CONFIG_CLANG_VERSION=0 +CONFIG_CC_HAS_ASM_GOTO=y CONFIG_IRQ_WORK=y CONFIG_BUILDTIME_EXTABLE_SORT=y @@ -41,8 +42,6 @@ CONFIG_CROSS_MEMORY_ATTACH=y CONFIG_AUDIT=y CONFIG_HAVE_ARCH_AUDITSYSCALL=y CONFIG_AUDITSYSCALL=y -CONFIG_AUDIT_WATCH=y -CONFIG_AUDIT_TREE=y # # IRQ subsystem @@ -51,6 +50,7 @@ CONFIG_GENERIC_IRQ_PROBE=y CONFIG_GENERIC_IRQ_SHOW=y CONFIG_GENERIC_IRQ_SHOW_LEVEL=y CONFIG_GENERIC_IRQ_EFFECTIVE_AFF_MASK=y +CONFIG_GENERIC_IRQ_MIGRATION=y CONFIG_HARDIRQS_SW_RESEND=y CONFIG_GENERIC_IRQ_CHIP=y CONFIG_IRQ_DOMAIN=y @@ -217,7 +217,6 @@ CONFIG_ARM=y CONFIG_ARM_HAS_SG_CHAIN=y CONFIG_ARM_DMA_USE_IOMMU=y CONFIG_ARM_DMA_IOMMU_ALIGNMENT=8 -CONFIG_MIGHT_HAVE_PCI=y CONFIG_SYS_SUPPORTS_APM_EMULATION=y CONFIG_HAVE_PROC_CPU=y CONFIG_NO_IOPORT_MAP=y @@ -365,6 +364,7 @@ CONFIG_SOC_IMX6Q=y # Cortex-A/Cortex-M asymmetric multiprocessing platforms # # CONFIG_SOC_IMX7D is not set +# CONFIG_SOC_IMX7ULP is not set # CONFIG_SOC_VF610 is not set # CONFIG_ARCH_KEYSTONE is not set # CONFIG_ARCH_MEDIATEK is not set @@ -427,6 +427,7 @@ CONFIG_MACH_OMAP3_PANDORA=y # CONFIG_OMAP5_ERRATA_801819 is not set # CONFIG_ARCH_SIRF is not set # CONFIG_ARCH_QCOM is not set +# CONFIG_ARCH_RDA is not set # CONFIG_ARCH_REALVIEW is not set CONFIG_ARCH_ROCKCHIP=y # CONFIG_ARCH_S5PV210 is not set @@ -537,77 +538,6 @@ CONFIG_ARM_ERRATA_773022=y # # Bus support # -CONFIG_PCI=y -CONFIG_PCI_DOMAINS=y -CONFIG_PCI_DOMAINS_GENERIC=y -CONFIG_PCI_SYSCALL=y -CONFIG_PCIEPORTBUS=y -CONFIG_PCIEAER=y -CONFIG_PCIEAER_INJECT=m -# CONFIG_PCIE_ECRC is not set -CONFIG_PCIEASPM=y -# CONFIG_PCIEASPM_DEBUG is not set -CONFIG_PCIEASPM_DEFAULT=y -# CONFIG_PCIEASPM_POWERSAVE is not set -# CONFIG_PCIEASPM_POWER_SUPERSAVE is not set -# CONFIG_PCIEASPM_PERFORMANCE is not set -CONFIG_PCIE_PME=y -CONFIG_PCIE_DPC=y -CONFIG_PCIE_PTM=y -CONFIG_PCI_MSI=y -CONFIG_PCI_MSI_IRQ_DOMAIN=y -CONFIG_PCI_QUIRKS=y -# CONFIG_PCI_DEBUG is not set -CONFIG_PCI_STUB=m -CONFIG_PCI_ECAM=y -CONFIG_PCI_BRIDGE_EMUL=y -# CONFIG_PCI_IOV is not set -# CONFIG_PCI_PRI is not set -# CONFIG_PCI_PASID is not set -CONFIG_PCI_LABEL=y -# CONFIG_HOTPLUG_PCI is not set - -# -# PCI controller drivers -# -CONFIG_PCI_MVEBU=y - -# -# Cadence PCIe controllers support -# -# CONFIG_PCIE_CADENCE_HOST is not set -# CONFIG_PCI_FTPCI100 is not set -CONFIG_PCI_TEGRA=y -CONFIG_PCI_HOST_COMMON=y -CONFIG_PCI_HOST_GENERIC=y -# CONFIG_PCIE_XILINX is not set -# CONFIG_PCI_V3_SEMI is not set -# CONFIG_PCIE_ALTERA is not set -CONFIG_PCIE_ROCKCHIP=y -CONFIG_PCIE_ROCKCHIP_HOST=m - -# -# DesignWare PCI Core Support -# -CONFIG_PCIE_DW=y -CONFIG_PCIE_DW_HOST=y -CONFIG_PCI_DRA7XX=y -CONFIG_PCI_DRA7XX_HOST=y -# CONFIG_PCIE_DW_PLAT_HOST is not set -CONFIG_PCI_IMX6=y -# CONFIG_PCI_LAYERSCAPE is not set -# CONFIG_PCIE_ARMADA_8K is not set - -# -# PCI Endpoint -# -# CONFIG_PCI_ENDPOINT is not set - -# -# PCI switch controller drivers -# -# CONFIG_PCI_SW_SWITCHTEC is not set -# CONFIG_PCCARD is not set # # Kernel Features @@ -661,6 +591,7 @@ CONFIG_PARAVIRT=y # CONFIG_PARAVIRT_TIME_ACCOUNTING is not set CONFIG_XEN_DOM0=y CONFIG_XEN=y +CONFIG_STACKPROTECTOR_PER_TASK=y # # Boot options @@ -766,6 +697,7 @@ CONFIG_PM_GENERIC_DOMAINS=y CONFIG_PM_GENERIC_DOMAINS_SLEEP=y CONFIG_PM_GENERIC_DOMAINS_OF=y CONFIG_CPU_PM=y +CONFIG_ENERGY_MODEL=y CONFIG_ARCH_SUSPEND_POSSIBLE=y CONFIG_ARM_CPU_SUSPEND=y CONFIG_ARCH_HIBERNATION_POSSIBLE=y @@ -781,6 +713,7 @@ CONFIG_ARM_SCMI_POWER_DOMAIN=m CONFIG_DMIID=y CONFIG_DMI_SYSFS=y CONFIG_RASPBERRYPI_FIRMWARE=y +# CONFIG_INTEL_STRATIX10_SERVICE is not set CONFIG_HAVE_ARM_SMCCC=y # CONFIG_GOOGLE_FIRMWARE is not set @@ -881,6 +814,7 @@ CONFIG_GCC_PLUGIN_STRUCTLEAK=y CONFIG_GCC_PLUGIN_STRUCTLEAK_BYREF_ALL=y # CONFIG_GCC_PLUGIN_STRUCTLEAK_VERBOSE is not set # CONFIG_GCC_PLUGIN_RANDSTRUCT is not set +CONFIG_GCC_PLUGIN_ARM_SSP_PER_TASK=y CONFIG_RT_MUTEXES=y CONFIG_BASE_SMALL=0 CONFIG_MODULES=y @@ -905,7 +839,6 @@ CONFIG_BLK_DEV_THROTTLING=y # CONFIG_BLK_CMDLINE_PARSER is not set CONFIG_BLK_WBT=y # CONFIG_BLK_CGROUP_IOLATENCY is not set -# CONFIG_BLK_WBT_SQ is not set CONFIG_BLK_WBT_MQ=y CONFIG_BLK_DEBUG_FS=y # CONFIG_BLK_SED_OPAL is not set @@ -941,14 +874,6 @@ CONFIG_BLK_PM=y # # IO Schedulers # -CONFIG_IOSCHED_NOOP=y -CONFIG_IOSCHED_DEADLINE=y -CONFIG_IOSCHED_CFQ=y -CONFIG_CFQ_GROUP_IOSCHED=y -# CONFIG_DEFAULT_DEADLINE is not set -CONFIG_DEFAULT_CFQ=y -# CONFIG_DEFAULT_NOOP is not set -CONFIG_DEFAULT_IOSCHED="cfq" CONFIG_MQ_IOSCHED_DEADLINE=y CONFIG_MQ_IOSCHED_KYBER=m CONFIG_IOSCHED_BFQ=m @@ -1014,6 +939,7 @@ CONFIG_FRAME_VECTOR=y CONFIG_NET=y CONFIG_NET_INGRESS=y CONFIG_NET_EGRESS=y +CONFIG_SKB_EXTENSIONS=y # # Networking options @@ -1177,9 +1103,6 @@ CONFIG_NF_CT_NETLINK_HELPER=m CONFIG_NETFILTER_NETLINK_GLUE_CT=y CONFIG_NF_NAT=m CONFIG_NF_NAT_NEEDED=y -CONFIG_NF_NAT_PROTO_DCCP=y -CONFIG_NF_NAT_PROTO_UDPLITE=y -CONFIG_NF_NAT_PROTO_SCTP=y CONFIG_NF_NAT_AMANDA=m CONFIG_NF_NAT_FTP=m CONFIG_NF_NAT_IRC=m @@ -1385,7 +1308,6 @@ CONFIG_NF_REJECT_IPV4=m CONFIG_NF_NAT_IPV4=m CONFIG_NF_NAT_MASQUERADE_IPV4=y CONFIG_NF_NAT_SNMP_BASIC=m -CONFIG_NF_NAT_PROTO_GRE=m CONFIG_NF_NAT_PPTP=m CONFIG_NF_NAT_H323=m CONFIG_IP_NF_IPTABLES=m @@ -1866,6 +1788,80 @@ CONFIG_HAVE_EBPF_JIT=y # CONFIG_ARM_AMBA=y CONFIG_TEGRA_AHB=y +CONFIG_HAVE_PCI=y +CONFIG_PCI=y +CONFIG_PCI_DOMAINS=y +CONFIG_PCI_DOMAINS_GENERIC=y +CONFIG_PCI_SYSCALL=y +CONFIG_PCIEPORTBUS=y +CONFIG_PCIEAER=y +CONFIG_PCIEAER_INJECT=m +# CONFIG_PCIE_ECRC is not set +CONFIG_PCIEASPM=y +# CONFIG_PCIEASPM_DEBUG is not set +CONFIG_PCIEASPM_DEFAULT=y +# CONFIG_PCIEASPM_POWERSAVE is not set +# CONFIG_PCIEASPM_POWER_SUPERSAVE is not set +# CONFIG_PCIEASPM_PERFORMANCE is not set +CONFIG_PCIE_PME=y +CONFIG_PCIE_DPC=y +CONFIG_PCIE_PTM=y +CONFIG_PCI_MSI=y +CONFIG_PCI_MSI_IRQ_DOMAIN=y +CONFIG_PCI_QUIRKS=y +# CONFIG_PCI_DEBUG is not set +CONFIG_PCI_STUB=m +CONFIG_PCI_ECAM=y +CONFIG_PCI_BRIDGE_EMUL=y +# CONFIG_PCI_IOV is not set +# CONFIG_PCI_PRI is not set +# CONFIG_PCI_PASID is not set +CONFIG_PCI_LABEL=y +# CONFIG_HOTPLUG_PCI is not set + +# +# PCI controller drivers +# +CONFIG_PCI_MVEBU=y + +# +# Cadence PCIe controllers support +# +# CONFIG_PCIE_CADENCE_HOST is not set +# CONFIG_PCI_FTPCI100 is not set +CONFIG_PCI_TEGRA=y +CONFIG_PCI_HOST_COMMON=y +CONFIG_PCI_HOST_GENERIC=y +# CONFIG_PCIE_XILINX is not set +# CONFIG_PCI_V3_SEMI is not set +# CONFIG_PCIE_ALTERA is not set +CONFIG_PCIE_ROCKCHIP=y +CONFIG_PCIE_ROCKCHIP_HOST=m + +# +# DesignWare PCI Core Support +# +CONFIG_PCIE_DW=y +CONFIG_PCIE_DW_HOST=y +CONFIG_PCI_DRA7XX=y +CONFIG_PCI_DRA7XX_HOST=y +# CONFIG_PCIE_DW_PLAT_HOST is not set +CONFIG_PCI_IMX6=y +# CONFIG_PCI_LAYERSCAPE is not set +# CONFIG_PCIE_ARMADA_8K is not set +# CONFIG_PCI_MESON is not set + +# +# PCI Endpoint +# +# CONFIG_PCI_ENDPOINT is not set + +# +# PCI switch controller drivers +# +# CONFIG_PCI_SW_SWITCHTEC is not set +# CONFIG_PCCARD is not set +# CONFIG_RAPIDIO is not set # # Generic Driver Options @@ -1937,7 +1933,6 @@ CONFIG_PROC_EVENTS=y CONFIG_GNSS=m CONFIG_MTD=y # CONFIG_MTD_TESTS is not set -# CONFIG_MTD_REDBOOT_PARTS is not set # CONFIG_MTD_CMDLINE_PARTS is not set # CONFIG_MTD_AFS_PARTS is not set CONFIG_MTD_OF_PARTS=m @@ -1946,6 +1941,7 @@ CONFIG_MTD_AR7_PARTS=m # # Partition parsers # +# CONFIG_MTD_REDBOOT_PARTS is not set # # User Modules And Translation Layers @@ -2112,10 +2108,12 @@ CONFIG_BLK_DEV_NVME=y CONFIG_NVME_FABRICS=m CONFIG_NVME_RDMA=m # CONFIG_NVME_FC is not set +# CONFIG_NVME_TCP is not set CONFIG_NVME_TARGET=m # CONFIG_NVME_TARGET_LOOP is not set CONFIG_NVME_TARGET_RDMA=m # CONFIG_NVME_TARGET_FC is not set +# CONFIG_NVME_TARGET_TCP is not set # # Misc devices @@ -2147,6 +2145,7 @@ CONFIG_SRAM_EXEC=y CONFIG_VEXPRESS_SYSCFG=y # CONFIG_PCI_ENDPOINT_TEST is not set CONFIG_MISC_RTSX=m +# CONFIG_PVPANIC is not set CONFIG_C2PORT=m # @@ -2208,6 +2207,7 @@ CONFIG_ALTERA_STAPL=m # VOP Driver # # CONFIG_ECHO is not set +CONFIG_MISC_ALCOR_PCI=m CONFIG_MISC_RTSX_PCI=m CONFIG_MISC_RTSX_USB=m CONFIG_HAVE_IDE=y @@ -2221,7 +2221,6 @@ CONFIG_RAID_ATTRS=m CONFIG_SCSI=m CONFIG_SCSI_DMA=y CONFIG_SCSI_NETLINK=y -# CONFIG_SCSI_MQ_DEFAULT is not set # CONFIG_SCSI_PROC_FS is not set # @@ -2569,7 +2568,7 @@ CONFIG_NET_DSA_BCM_SF2=m # CONFIG_NET_DSA_LANTIQ_GSWIP is not set # CONFIG_NET_DSA_MT7530 is not set CONFIG_NET_DSA_MV88E6060=m -# CONFIG_MICROCHIP_KSZ is not set +# CONFIG_NET_DSA_MICROCHIP_KSZ9477 is not set CONFIG_NET_DSA_MV88E6XXX=m CONFIG_NET_DSA_MV88E6XXX_GLOBAL2=y # CONFIG_NET_DSA_MV88E6XXX_PTP is not set @@ -2986,6 +2985,7 @@ CONFIG_USB_IPHETH=m CONFIG_USB_SIERRA_NET=m CONFIG_USB_VL600=m CONFIG_USB_NET_CH9200=m +CONFIG_USB_NET_AQC111=m CONFIG_WLAN=y # CONFIG_WIRELESS_WDS is not set CONFIG_WLAN_VENDOR_ADMTEK=y @@ -3217,9 +3217,10 @@ CONFIG_WLAN_VENDOR_ZYDAS=y CONFIG_ZD1211RW=m # CONFIG_ZD1211RW_DEBUG is not set CONFIG_WLAN_VENDOR_QUANTENNA=y -# CONFIG_QTNFMAC_PEARL_PCIE is not set +# CONFIG_QTNFMAC_PCIE is not set CONFIG_MAC80211_HWSIM=m CONFIG_USB_NET_RNDIS_WLAN=m +CONFIG_VIRT_WIFI=m # # WiMAX Wireless Broadband devices @@ -3388,6 +3389,7 @@ CONFIG_TOUCHSCREEN_INEXIO=m CONFIG_TOUCHSCREEN_MK712=m CONFIG_TOUCHSCREEN_PENMOUNT=m # CONFIG_TOUCHSCREEN_EDT_FT5X06 is not set +CONFIG_TOUCHSCREEN_RASPBERRYPI_FW=m CONFIG_TOUCHSCREEN_TOUCHRIGHT=m CONFIG_TOUCHSCREEN_TOUCHWIN=m CONFIG_TOUCHSCREEN_TI_AM335X_TSC=m @@ -3504,6 +3506,7 @@ CONFIG_SERIO_ALTERA_PS2=m # CONFIG_SERIO_PS2MULT is not set # CONFIG_SERIO_ARC_PS2 is not set # CONFIG_SERIO_APBPS2 is not set +CONFIG_SERIO_OLPC_APSP=m CONFIG_SERIO_SUN4I_PS2=m CONFIG_SERIO_GPIO_PS2=m # CONFIG_USERIO is not set @@ -3595,6 +3598,7 @@ CONFIG_SERIAL_RP2_NR_UARTS=32 CONFIG_SERIAL_MCTRL_GPIO=y # CONFIG_SERIAL_DEV_BUS is not set CONFIG_TTY_PRINTK=m +CONFIG_TTY_PRINTK_LEVEL=6 # CONFIG_PRINTER is not set # CONFIG_PPDEV is not set CONFIG_HVC_DRIVER=y @@ -3728,6 +3732,7 @@ CONFIG_I2C_CROS_EC_TUNNEL=m # CONFIG_I2C_DEBUG_CORE is not set # CONFIG_I2C_DEBUG_ALGO is not set # CONFIG_I2C_DEBUG_BUS is not set +# CONFIG_I3C is not set CONFIG_SPI=y # CONFIG_SPI_DEBUG is not set CONFIG_SPI_MASTER=y @@ -3762,6 +3767,7 @@ CONFIG_SPI_ROCKCHIP=m # CONFIG_SPI_SC18IS602 is not set CONFIG_SPI_SUN4I=m CONFIG_SPI_SUN6I=m +CONFIG_SPI_MXIC=m CONFIG_SPI_TEGRA114=m CONFIG_SPI_TEGRA20_SFLASH=m # CONFIG_SPI_TEGRA20_SLINK is not set @@ -3831,6 +3837,7 @@ CONFIG_PINCTRL_SINGLE=y # CONFIG_PINCTRL_SX150X is not set CONFIG_PINCTRL_PALMAS=y CONFIG_PINCTRL_RK805=m +# CONFIG_PINCTRL_OCELOT is not set CONFIG_PINCTRL_BCM2835=y CONFIG_PINCTRL_IMX=y CONFIG_PINCTRL_IMX51=y @@ -3882,6 +3889,7 @@ CONFIG_GPIO_GENERIC=y # CONFIG_GPIO_74XX_MMIO is not set # CONFIG_GPIO_ALTERA is not set CONFIG_GPIO_RASPBERRYPI_EXP=m +CONFIG_GPIO_CADENCE=m # CONFIG_GPIO_DWAPB is not set # CONFIG_GPIO_EXAR is not set # CONFIG_GPIO_FTGPIO010 is not set @@ -3895,6 +3903,7 @@ CONFIG_GPIO_MVEBU=y CONFIG_GPIO_MXC=y CONFIG_GPIO_OMAP=y CONFIG_GPIO_PL061=y +# CONFIG_GPIO_SAMA5D2_PIOBU is not set # CONFIG_GPIO_SYSCON is not set CONFIG_GPIO_TEGRA=y # CONFIG_GPIO_TS4800 is not set @@ -4134,6 +4143,7 @@ CONFIG_SENSORS_NCT6775=m # CONFIG_SENSORS_NCT7802 is not set # CONFIG_SENSORS_NCT7904 is not set # CONFIG_SENSORS_NPCM7XX is not set +# CONFIG_SENSORS_OCC_P8_I2C is not set # CONFIG_SENSORS_PCF8591 is not set # CONFIG_PMBUS is not set CONFIG_SENSORS_PWM_FAN=m @@ -4209,10 +4219,6 @@ CONFIG_CPU_THERMAL=y CONFIG_ROCKCHIP_THERMAL=m CONFIG_ARMADA_THERMAL=y -# -# ACPI INT340X thermal drivers -# - # # Broadcom thermal drivers # @@ -4322,7 +4328,6 @@ CONFIG_MFD_CORE=y CONFIG_MFD_AS3722=y # CONFIG_PMIC_ADP5520 is not set # CONFIG_MFD_AAT2870_CORE is not set -# CONFIG_MFD_AT91_USART is not set # CONFIG_MFD_ATMEL_FLEXCOM is not set # CONFIG_MFD_ATMEL_HLCDC is not set # CONFIG_MFD_BCM590XX is not set @@ -4477,6 +4482,7 @@ CONFIG_REGULATOR_MAX77686=m CONFIG_REGULATOR_MC13XXX_CORE=m CONFIG_REGULATOR_MC13783=m CONFIG_REGULATOR_MC13892=m +# CONFIG_REGULATOR_MCP16502 is not set # CONFIG_REGULATOR_MT6311 is not set CONFIG_REGULATOR_PALMAS=y CONFIG_REGULATOR_PBIAS=m @@ -4537,6 +4543,7 @@ CONFIG_IR_PWM_TX=m CONFIG_IR_SUNXI=m # CONFIG_IR_SERIAL is not set # CONFIG_IR_SIR is not set +CONFIG_RC_XBOX_DVD=m CONFIG_MEDIA_SUPPORT=y # @@ -4556,7 +4563,6 @@ CONFIG_VIDEO_V4L2_SUBDEV_API=y CONFIG_VIDEO_V4L2=y # CONFIG_VIDEO_ADV_DEBUG is not set # CONFIG_VIDEO_FIXED_MINOR_RANGES is not set -# CONFIG_VIDEO_PCI_SKELETON is not set CONFIG_VIDEO_TUNER=m CONFIG_V4L2_MEM2MEM_DEV=m CONFIG_V4L2_FWNODE=m @@ -4817,12 +4823,14 @@ CONFIG_VIDEO_CAFE_CCIC=m CONFIG_VIDEO_CADENCE=y CONFIG_VIDEO_CADENCE_CSI2RX=m CONFIG_VIDEO_CADENCE_CSI2TX=m +CONFIG_VIDEO_ASPEED=m # CONFIG_VIDEO_MUX is not set CONFIG_VIDEO_OMAP3=m # CONFIG_VIDEO_OMAP3_DEBUG is not set # CONFIG_SOC_CAMERA is not set # CONFIG_VIDEO_SAMSUNG_EXYNOS4_IS is not set # CONFIG_VIDEO_XILINX is not set +CONFIG_VIDEO_SUN6I_CSI=m # CONFIG_VIDEO_TI_CAL is not set CONFIG_V4L_MEM2MEM_DRIVERS=y # CONFIG_VIDEO_CODA is not set @@ -5323,6 +5331,16 @@ CONFIG_DRM_TILCDC=m CONFIG_DRM_QXL=m CONFIG_DRM_BOCHS=m CONFIG_DRM_VIRTIO_GPU=m +CONFIG_DRM_MSM=m +# CONFIG_DRM_MSM_REGISTER_LOGGING is not set +# CONFIG_DRM_MSM_GPU_SUDO is not set +CONFIG_DRM_MSM_DSI=y +CONFIG_DRM_MSM_DSI_PLL=y +CONFIG_DRM_MSM_DSI_28NM_PHY=y +CONFIG_DRM_MSM_DSI_20NM_PHY=y +CONFIG_DRM_MSM_DSI_28NM_8960_PHY=y +CONFIG_DRM_MSM_DSI_14NM_PHY=y +CONFIG_DRM_MSM_DSI_10NM_PHY=y # CONFIG_DRM_FSL_DCU is not set # CONFIG_DRM_TEGRA is not set # CONFIG_DRM_STM is not set @@ -5340,10 +5358,12 @@ CONFIG_DRM_PANEL_ILITEK_ILI9881C=m # CONFIG_DRM_PANEL_JDI_LT070ME05000 is not set # CONFIG_DRM_PANEL_SAMSUNG_LD9040 is not set # CONFIG_DRM_PANEL_LG_LG4573 is not set +# CONFIG_DRM_PANEL_OLIMEX_LCD_OLINUXINO is not set # CONFIG_DRM_PANEL_ORISETECH_OTM8009A is not set # CONFIG_DRM_PANEL_PANASONIC_VVX10F034N00 is not set CONFIG_DRM_PANEL_RASPBERRYPI_TOUCHSCREEN=m # CONFIG_DRM_PANEL_RAYDIUM_RM68200 is not set +# CONFIG_DRM_PANEL_SAMSUNG_S6D16D0 is not set # CONFIG_DRM_PANEL_SAMSUNG_S6E3HA2 is not set # CONFIG_DRM_PANEL_SAMSUNG_S6E63J0X03 is not set # CONFIG_DRM_PANEL_SAMSUNG_S6E8AA0 is not set @@ -5351,6 +5371,7 @@ CONFIG_DRM_PANEL_RASPBERRYPI_TOUCHSCREEN=m # CONFIG_DRM_PANEL_SHARP_LQ101R1SX01 is not set # CONFIG_DRM_PANEL_SHARP_LS043T1LE01 is not set # CONFIG_DRM_PANEL_SITRONIX_ST7789V is not set +# CONFIG_DRM_PANEL_TRULY_NT35597_WQXGA is not set CONFIG_DRM_BRIDGE=y CONFIG_DRM_PANEL_BRIDGE=y @@ -5378,6 +5399,7 @@ CONFIG_DRM_DW_HDMI=m # CONFIG_DRM_DW_HDMI_AHB_AUDIO is not set # CONFIG_DRM_DW_HDMI_I2S_AUDIO is not set CONFIG_DRM_DW_HDMI_CEC=m +CONFIG_DRM_DW_MIPI_DSI=m # CONFIG_DRM_STI is not set CONFIG_DRM_IMX=m # CONFIG_DRM_IMX_PARALLEL_DISPLAY is not set @@ -5422,7 +5444,7 @@ CONFIG_FB_SYS_IMAGEBLIT=y CONFIG_FB_SYS_FOPS=y CONFIG_FB_DEFERRED_IO=y CONFIG_FB_SVGALIB=m -CONFIG_FB_BACKLIGHT=y +CONFIG_FB_BACKLIGHT=m CONFIG_FB_MODE_HELPERS=y CONFIG_FB_TILEBLITTING=y @@ -5681,8 +5703,6 @@ CONFIG_SND_SOC_GENERIC_DMAENGINE_PCM=y # CONFIG_SND_SOC_AMD_ACP is not set # CONFIG_SND_ATMEL_SOC is not set CONFIG_SND_BCM2835_SOC_I2S=m -# CONFIG_SND_EDMA_SOC is not set -CONFIG_SND_DAVINCI_SOC_MCASP=m # CONFIG_SND_DESIGNWARE_I2S is not set # @@ -5714,17 +5734,6 @@ CONFIG_SND_SOC_IMX_SPDIF=m CONFIG_SND_SOC_IMX_MC13783=m # CONFIG_SND_SOC_FSL_ASOC_CARD is not set # CONFIG_SND_I2S_HI6210_I2S is not set -CONFIG_SND_OMAP_SOC=m -CONFIG_SND_SDMA_SOC=m -CONFIG_SND_OMAP_SOC_DMIC=m -CONFIG_SND_OMAP_SOC_MCBSP=m -CONFIG_SND_OMAP_SOC_MCPDM=m -# CONFIG_SND_OMAP_SOC_HDMI_AUDIO is not set -CONFIG_SND_OMAP_SOC_RX51=m -CONFIG_SND_OMAP_SOC_AM3517EVM=m -CONFIG_SND_OMAP_SOC_OMAP_TWL4030=m -CONFIG_SND_OMAP_SOC_OMAP_ABE_TWL6040=m -CONFIG_SND_OMAP_SOC_OMAP3_PANDORA=m # CONFIG_SND_KIRKWOOD_SOC is not set # CONFIG_SND_SOC_IMG is not set CONFIG_SND_SOC_ROCKCHIP=m @@ -5765,6 +5774,30 @@ CONFIG_SND_SOC_TEGRA_ALC5632=m CONFIG_SND_SOC_TEGRA_MAX98090=m CONFIG_SND_SOC_TEGRA_RT5677=m # CONFIG_SND_SOC_TEGRA_SGTL5000 is not set + +# +# Audio support for Texas Instruments SoCs +# +CONFIG_SND_SOC_TI_EDMA_PCM=m +CONFIG_SND_SOC_TI_SDMA_PCM=m + +# +# Texas Instruments DAI support for: +# +CONFIG_SND_SOC_DAVINCI_MCASP=m +CONFIG_SND_SOC_OMAP_DMIC=m +CONFIG_SND_SOC_OMAP_MCBSP=m +CONFIG_SND_SOC_OMAP_MCPDM=m + +# +# Audio support for boards with Texas Instruments SoCs +# +CONFIG_SND_SOC_NOKIA_RX51=m +CONFIG_SND_SOC_OMAP3_PANDORA=m +CONFIG_SND_SOC_OMAP3_TWL4030=m +CONFIG_SND_SOC_OMAP_ABE_TWL6040=m +CONFIG_SND_SOC_OMAP_HDMI=m +# CONFIG_SND_SOC_XILINX_I2S is not set # CONFIG_SND_SOC_XTFPGA_I2S is not set # CONFIG_ZX_TDM is not set CONFIG_SND_SOC_I2C_AND_SPI=m @@ -5778,6 +5811,7 @@ CONFIG_SND_SOC_I2C_AND_SPI=m # CONFIG_SND_SOC_ADAU1761_SPI is not set # CONFIG_SND_SOC_ADAU7002 is not set # CONFIG_SND_SOC_AK4104 is not set +# CONFIG_SND_SOC_AK4118 is not set # CONFIG_SND_SOC_AK4458 is not set # CONFIG_SND_SOC_AK4554 is not set # CONFIG_SND_SOC_AK4613 is not set @@ -6404,6 +6438,7 @@ CONFIG_USB_G_NOKIA=m # CONFIG_USB_G_DBGP is not set # CONFIG_USB_G_WEBCAM is not set # CONFIG_TYPEC is not set +CONFIG_USB_ROLE_SWITCH=m CONFIG_USB_LED_TRIG=y CONFIG_USB_ULPI_BUS=m CONFIG_UWB=m @@ -6444,6 +6479,7 @@ CONFIG_MMC_SDHCI_PXAV3=m CONFIG_MMC_SDHCI_IPROC=m CONFIG_MMC_OMAP=m CONFIG_MMC_OMAP_HS=m +CONFIG_MMC_ALCOR=m # CONFIG_MMC_MXC is not set CONFIG_MMC_TIFM_SD=m CONFIG_MMC_MVSDIO=m @@ -6471,6 +6507,7 @@ CONFIG_MMC_BCM2835=m # CONFIG_MMC_MTK is not set # CONFIG_MMC_SDHCI_XENON is not set # CONFIG_MMC_SDHCI_OMAP is not set +CONFIG_MMC_SDHCI_AM654=m CONFIG_MEMSTICK=m # CONFIG_MEMSTICK_DEBUG is not set @@ -6562,6 +6599,7 @@ CONFIG_LEDS_TRIGGER_CAMERA=m CONFIG_LEDS_TRIGGER_PANIC=y # CONFIG_LEDS_TRIGGER_NETDEV is not set # CONFIG_LEDS_TRIGGER_PATTERN is not set +# CONFIG_LEDS_TRIGGER_AUDIO is not set CONFIG_ACCESSIBILITY=y CONFIG_A11Y_BRAILLE_CONSOLE=y CONFIG_INFINIBAND=m @@ -6890,7 +6928,6 @@ CONFIG_RTLWIFI_DEBUG_ST=y # # Resolver to digital converters # -# CONFIG_AD2S90 is not set # CONFIG_AD2S1210 is not set # CONFIG_FB_SM750 is not set # CONFIG_FB_XGI is not set @@ -6919,7 +6956,6 @@ CONFIG_SPEAKUP_SYNTH_DUMMY=m # CONFIG_STAGING_BOARD is not set # CONFIG_LTE_GDM724X is not set # CONFIG_FIREWIRE_SERIAL is not set -# CONFIG_MTD_SPINAND_MT29F is not set # CONFIG_GS_FPGABOOT is not set # CONFIG_UNISYSSPAR is not set # CONFIG_COMMON_CLK_XLNX_CLKWZRD is not set @@ -6987,6 +7023,8 @@ CONFIG_CLK_TWL6040=m CONFIG_COMMON_CLK_PALMAS=m # CONFIG_COMMON_CLK_PWM is not set # CONFIG_COMMON_CLK_VC5 is not set +# CONFIG_COMMON_CLK_BD718XX is not set +CONFIG_MXC_CLK=y CONFIG_MVEBU_CLK_COMMON=y CONFIG_MVEBU_CLK_CPU=y CONFIG_MVEBU_CLK_COREDIV=y @@ -7165,6 +7203,7 @@ CONFIG_OMAP_GPMC=y # CONFIG_OMAP_GPMC_DEBUG is not set CONFIG_TI_EMIF_SRAM=m CONFIG_MVEBU_DEVBUS=y +CONFIG_PL353_SMC=y CONFIG_SAMSUNG_MC=y CONFIG_EXYNOS_SROM=y CONFIG_TEGRA_MC=y @@ -7221,6 +7260,7 @@ CONFIG_MMA8452=m # # Analog to digital converters # +# CONFIG_AD7124 is not set # CONFIG_AD7266 is not set # CONFIG_AD7291 is not set # CONFIG_AD7298 is not set @@ -7230,6 +7270,7 @@ CONFIG_MMA8452=m # CONFIG_AD7793 is not set # CONFIG_AD7887 is not set # CONFIG_AD7923 is not set +# CONFIG_AD7949 is not set # CONFIG_AD799X is not set CONFIG_AXP20X_ADC=m CONFIG_AXP288_ADC=m @@ -7344,6 +7385,7 @@ CONFIG_IIO_ST_SENSORS_CORE=m # CONFIG_MCP4922 is not set # CONFIG_TI_DAC082S085 is not set # CONFIG_TI_DAC5571 is not set +# CONFIG_TI_DAC7311 is not set # CONFIG_VF610_DAC is not set # @@ -7453,6 +7495,7 @@ CONFIG_SENSORS_TSL2563=m # CONFIG_TSL4531 is not set # CONFIG_US5182D is not set # CONFIG_VCNL4000 is not set +# CONFIG_VCNL4035 is not set # CONFIG_VEML6070 is not set # CONFIG_VL6180 is not set # CONFIG_ZOPT2201 is not set @@ -7471,6 +7514,8 @@ CONFIG_HID_SENSOR_MAGNETOMETER_3D=m # CONFIG_IIO_ST_MAGN_3AXIS is not set # CONFIG_SENSORS_HMC5843_I2C is not set # CONFIG_SENSORS_HMC5843_SPI is not set +# CONFIG_SENSORS_RM3100_I2C is not set +# CONFIG_SENSORS_RM3100_SPI is not set # # Multiplexers @@ -7499,6 +7544,7 @@ CONFIG_HID_SENSOR_DEVICE_ROTATION=m # CONFIG_MCP4018 is not set # CONFIG_MCP4131 is not set # CONFIG_MCP4531 is not set +# CONFIG_MCP41010 is not set # CONFIG_TPL0102 is not set # @@ -7542,6 +7588,7 @@ CONFIG_HID_SENSOR_PRESS=m # # Resolver to digital converters # +# CONFIG_AD2S90 is not set # CONFIG_AD2S1200 is not set # @@ -7589,14 +7636,17 @@ CONFIG_ARM_GIC_V3=y CONFIG_ARM_GIC_V3_ITS=y CONFIG_ARM_GIC_V3_ITS_PCI=y CONFIG_ARMADA_370_XP_IRQ=y +CONFIG_MADERA_IRQ=m CONFIG_OMAP_IRQCHIP=y # CONFIG_TS4800_IRQ is not set CONFIG_IRQ_CROSSBAR=y CONFIG_PARTITION_PERCPU=y +CONFIG_IMX_IRQSTEER=y # CONFIG_IPACK_BUS is not set CONFIG_ARCH_HAS_RESET_CONTROLLER=y CONFIG_RESET_CONTROLLER=y CONFIG_RESET_SIMPLE=y +CONFIG_RESET_SOCFPGA=y CONFIG_RESET_SUNXI=y # CONFIG_RESET_TI_SYSCON is not set # CONFIG_FMC is not set @@ -7609,6 +7659,8 @@ CONFIG_PHY_SUN4I_USB=m CONFIG_PHY_SUN9I_USB=m # CONFIG_BCM_KONA_USB2_PHY is not set # CONFIG_PHY_CADENCE_DP is not set +# CONFIG_PHY_CADENCE_SIERRA is not set +# CONFIG_PHY_FSL_IMX8MQ_USB is not set CONFIG_ARMADA375_USBCLUSTER_PHY=y CONFIG_PHY_MVEBU_CP110_COMPHY=m # CONFIG_PHY_PXA_28NM_HSIC is not set @@ -7641,6 +7693,7 @@ CONFIG_OMAP_USB2=m CONFIG_TI_PIPE3=m CONFIG_PHY_TUSB1210=m CONFIG_TWL4030_USB=m +CONFIG_PHY_TI_GMII_SEL=m # CONFIG_POWERCAP is not set # CONFIG_MCB is not set @@ -8072,6 +8125,7 @@ CONFIG_IMA_DEFAULT_HASH="sha256" # CONFIG_IMA_WRITE_POLICY is not set # CONFIG_IMA_READ_POLICY is not set CONFIG_IMA_APPRAISE=y +# CONFIG_IMA_ARCH_POLICY is not set # CONFIG_IMA_APPRAISE_BUILD_POLICY is not set CONFIG_IMA_APPRAISE_BOOTPARAM=y CONFIG_IMA_TRUSTED_KEYRING=y @@ -8154,6 +8208,8 @@ CONFIG_CRYPTO_OFB=m CONFIG_CRYPTO_PCBC=m CONFIG_CRYPTO_XTS=m # CONFIG_CRYPTO_KEYWRAP is not set +CONFIG_CRYPTO_NHPOLY1305=m +CONFIG_CRYPTO_ADIANTUM=m # # Hash modes @@ -8183,6 +8239,7 @@ CONFIG_CRYPTO_SHA256=y CONFIG_CRYPTO_SHA512=m # CONFIG_CRYPTO_SHA3 is not set # CONFIG_CRYPTO_SM3 is not set +CONFIG_CRYPTO_STREEBOG=m CONFIG_CRYPTO_TGR192=m CONFIG_CRYPTO_WP512=m @@ -8236,6 +8293,7 @@ CONFIG_CRYPTO_USER_API_HASH=m CONFIG_CRYPTO_USER_API_SKCIPHER=m CONFIG_CRYPTO_USER_API_RNG=m CONFIG_CRYPTO_USER_API_AEAD=m +# CONFIG_CRYPTO_STATS is not set CONFIG_CRYPTO_HASH_INFO=y CONFIG_CRYPTO_HW=y CONFIG_CRYPTO_DEV_MARVELL_CESA=m @@ -8274,6 +8332,7 @@ CONFIG_BINARY_PRINTF=y # Library routines # CONFIG_RAID6_PQ=m +CONFIG_RAID6_PQ_BENCHMARK=y CONFIG_BITREVERSE=y CONFIG_HAVE_ARCH_BITREVERSE=y CONFIG_RATIONAL=y @@ -8298,7 +8357,7 @@ CONFIG_CRC64=m CONFIG_CRC7=m CONFIG_LIBCRC32C=m CONFIG_CRC8=m -CONFIG_XXHASH=m +CONFIG_XXHASH=y CONFIG_AUDIT_GENERIC=y # CONFIG_RANDOM32_SELFTEST is not set CONFIG_ZLIB_INFLATE=y @@ -8340,9 +8399,9 @@ CONFIG_NEED_SG_DMA_LENGTH=y CONFIG_NEED_DMA_MAP_STATE=y CONFIG_ARCH_DMA_ADDR_T_64BIT=y CONFIG_HAVE_GENERIC_DMA_COHERENT=y -CONFIG_DMA_DIRECT_OPS=y CONFIG_DMA_VIRT_OPS=y CONFIG_SWIOTLB=y +CONFIG_DMA_REMAP=y CONFIG_SGL_ALLOC=y CONFIG_CHECK_SIGNATURE=y CONFIG_CPU_RMAP=y @@ -8366,7 +8425,6 @@ CONFIG_FONT_8x8=y CONFIG_FONT_8x16=y CONFIG_SG_SPLIT=y CONFIG_SG_POOL=y -CONFIG_ARCH_HAS_SG_CHAIN=y CONFIG_SBITMAP=y # CONFIG_STRING_SELFTEST is not set @@ -8430,6 +8488,8 @@ CONFIG_ARCH_HAS_DEBUG_VIRTUAL=y CONFIG_DEBUG_MEMORY_INIT=y # CONFIG_DEBUG_PER_CPU_MAPS is not set # CONFIG_DEBUG_HIGHMEM is not set +CONFIG_CC_HAS_KASAN_GENERIC=y +CONFIG_KASAN_STACK=1 CONFIG_ARCH_HAS_KCOV=y CONFIG_CC_HAS_SANCOV_TRACE_PC=y # CONFIG_KCOV is not set @@ -8533,6 +8593,7 @@ CONFIG_BLK_DEV_IO_TRACE=y CONFIG_KPROBE_EVENTS=y CONFIG_UPROBE_EVENTS=y CONFIG_BPF_EVENTS=y +CONFIG_DYNAMIC_EVENTS=y CONFIG_PROBE_EVENTS=y CONFIG_DYNAMIC_FTRACE=y CONFIG_DYNAMIC_FTRACE_WITH_REGS=y @@ -8595,7 +8656,6 @@ CONFIG_UNWINDER_FRAME_POINTER=y # CONFIG_UNWINDER_ARM is not set # CONFIG_DEBUG_USER is not set # CONFIG_DEBUG_LL is not set -CONFIG_DEBUG_IMX_UART_PORT=1 CONFIG_DEBUG_LL_INCLUDE="mach/debug-macro.S" CONFIG_UNCOMPRESS_INCLUDE="debug/uncompress.h" # CONFIG_ARM_KPROBES_TEST is not set diff --git a/gnu/packages/aux-files/linux-libre/4.20-arm64.conf b/gnu/packages/aux-files/linux-libre/5.0-arm64.conf similarity index 97% rename from gnu/packages/aux-files/linux-libre/4.20-arm64.conf rename to gnu/packages/aux-files/linux-libre/5.0-arm64.conf index 3833e3e363..e6309efa19 100644 --- a/gnu/packages/aux-files/linux-libre/4.20-arm64.conf +++ b/gnu/packages/aux-files/linux-libre/5.0-arm64.conf @@ -1,6 +1,6 @@ # # Automatically generated file; DO NOT EDIT. -# Linux/arm64 4.20.0-gnu Kernel Configuration +# Linux/arm64 5.0.0-gnu Kernel Configuration # # @@ -9,6 +9,7 @@ CONFIG_CC_IS_GCC=y CONFIG_GCC_VERSION=70400 CONFIG_CLANG_VERSION=0 +CONFIG_CC_HAS_ASM_GOTO=y CONFIG_IRQ_WORK=y CONFIG_BUILDTIME_EXTABLE_SORT=y CONFIG_THREAD_INFO_IN_TASK=y @@ -32,8 +33,6 @@ CONFIG_CROSS_MEMORY_ATTACH=y CONFIG_AUDIT=y CONFIG_HAVE_ARCH_AUDITSYSCALL=y CONFIG_AUDITSYSCALL=y -CONFIG_AUDIT_WATCH=y -CONFIG_AUDIT_TREE=y # # IRQ subsystem @@ -235,6 +234,7 @@ CONFIG_GENERIC_CSUM=y CONFIG_GENERIC_CALIBRATE_DELAY=y CONFIG_ZONE_DMA32=y CONFIG_HAVE_GENERIC_GUP=y +CONFIG_ARCH_ENABLE_MEMORY_HOTPLUG=y CONFIG_SMP=y CONFIG_KERNEL_MODE_NEON=y CONFIG_FIX_EARLYCON_MEM=y @@ -260,6 +260,7 @@ CONFIG_ARCH_HISI=y # CONFIG_ARCH_MEDIATEK is not set CONFIG_ARCH_MESON=y CONFIG_ARCH_MVEBU=y +CONFIG_ARCH_MXC=y CONFIG_ARCH_QCOM=y # CONFIG_ARCH_REALTEK is not set # CONFIG_ARCH_RENESAS is not set @@ -277,90 +278,6 @@ CONFIG_ARCH_XGENE=y # CONFIG_ARCH_ZX is not set # CONFIG_ARCH_ZYNQMP is not set -# -# Bus support -# -CONFIG_PCI=y -CONFIG_PCI_DOMAINS=y -CONFIG_PCI_DOMAINS_GENERIC=y -CONFIG_PCI_SYSCALL=y -CONFIG_PCIEPORTBUS=y -CONFIG_HOTPLUG_PCI_PCIE=y -CONFIG_PCIEAER=y -CONFIG_PCIEAER_INJECT=m -# CONFIG_PCIE_ECRC is not set -CONFIG_PCIEASPM=y -# CONFIG_PCIEASPM_DEBUG is not set -CONFIG_PCIEASPM_DEFAULT=y -# CONFIG_PCIEASPM_POWERSAVE is not set -# CONFIG_PCIEASPM_POWER_SUPERSAVE is not set -# CONFIG_PCIEASPM_PERFORMANCE is not set -CONFIG_PCIE_PME=y -CONFIG_PCIE_DPC=y -CONFIG_PCIE_PTM=y -CONFIG_PCI_MSI=y -CONFIG_PCI_MSI_IRQ_DOMAIN=y -CONFIG_PCI_QUIRKS=y -# CONFIG_PCI_DEBUG is not set -CONFIG_PCI_REALLOC_ENABLE_AUTO=y -CONFIG_PCI_STUB=m -# CONFIG_PCI_PF_STUB is not set -CONFIG_PCI_ATS=y -CONFIG_PCI_ECAM=y -CONFIG_PCI_BRIDGE_EMUL=y -CONFIG_PCI_IOV=y -# CONFIG_PCI_PRI is not set -# CONFIG_PCI_PASID is not set -CONFIG_PCI_LABEL=y -CONFIG_HOTPLUG_PCI=y -CONFIG_HOTPLUG_PCI_ACPI=y -CONFIG_HOTPLUG_PCI_ACPI_IBM=m -CONFIG_HOTPLUG_PCI_CPCI=y -CONFIG_HOTPLUG_PCI_SHPC=y - -# -# PCI controller drivers -# -CONFIG_PCI_AARDVARK=y - -# -# Cadence PCIe controllers support -# -# CONFIG_PCIE_CADENCE_HOST is not set -# CONFIG_PCI_FTPCI100 is not set -CONFIG_PCI_TEGRA=y -CONFIG_PCI_HOST_COMMON=y -CONFIG_PCI_HOST_GENERIC=y -# CONFIG_PCIE_XILINX is not set -CONFIG_PCI_XGENE=y -CONFIG_PCI_XGENE_MSI=y -CONFIG_PCI_HOST_THUNDER_PEM=y -CONFIG_PCI_HOST_THUNDER_ECAM=y -CONFIG_PCIE_ROCKCHIP=y -CONFIG_PCIE_ROCKCHIP_HOST=m - -# -# DesignWare PCI Core Support -# -CONFIG_PCIE_DW=y -CONFIG_PCIE_DW_HOST=y -# CONFIG_PCIE_DW_PLAT_HOST is not set -CONFIG_PCI_HISI=y -CONFIG_PCIE_QCOM=y -CONFIG_PCIE_ARMADA_8K=y -CONFIG_PCIE_KIRIN=y -# CONFIG_PCIE_HISI_STB is not set - -# -# PCI Endpoint -# -# CONFIG_PCI_ENDPOINT is not set - -# -# PCI switch controller drivers -# -# CONFIG_PCI_SW_SWITCHTEC is not set - # # Kernel Features # @@ -368,6 +285,7 @@ CONFIG_PCIE_KIRIN=y # # ARM errata workarounds via the alternatives framework # +CONFIG_ARM64_WORKAROUND_CLEAN_CACHE=y CONFIG_ARM64_ERRATUM_826319=y CONFIG_ARM64_ERRATUM_827319=y CONFIG_ARM64_ERRATUM_824069=y @@ -375,9 +293,10 @@ CONFIG_ARM64_ERRATUM_819472=y CONFIG_ARM64_ERRATUM_832075=y CONFIG_ARM64_ERRATUM_834220=y CONFIG_ARM64_ERRATUM_845719=y -# CONFIG_ARM64_ERRATUM_843419 is not set +CONFIG_ARM64_ERRATUM_843419=y CONFIG_ARM64_ERRATUM_1024718=y CONFIG_ARM64_ERRATUM_1188873=y +CONFIG_ARM64_ERRATUM_1165522=y CONFIG_ARM64_ERRATUM_1286807=y CONFIG_CAVIUM_ERRATUM_22375=y CONFIG_CAVIUM_ERRATUM_23144=y @@ -429,6 +348,8 @@ CONFIG_SECCOMP=y CONFIG_PARAVIRT=y # CONFIG_PARAVIRT_TIME_ACCOUNTING is not set CONFIG_KEXEC=y +CONFIG_KEXEC_FILE=y +# CONFIG_KEXEC_VERIFY_SIG is not set CONFIG_CRASH_DUMP=y CONFIG_XEN_DOM0=y CONFIG_XEN=y @@ -437,6 +358,7 @@ CONFIG_UNMAP_KERNEL_AT_EL0=y CONFIG_HARDEN_BRANCH_PREDICTOR=y CONFIG_HARDEN_EL2_VECTORS=y CONFIG_ARM64_SSBD=y +CONFIG_RODATA_FULL_DEFAULT_ENABLED=y CONFIG_ARMV8_DEPRECATED=y CONFIG_SWP_EMULATION=y CONFIG_CP15_BARRIER_EMULATION=y @@ -458,6 +380,11 @@ CONFIG_ARM64_UAO=y CONFIG_ARM64_PMEM=y CONFIG_ARM64_RAS_EXTN=y CONFIG_ARM64_CNP=y + +# +# ARMv8.3 architectural features +# +CONFIG_ARM64_PTR_AUTH=y CONFIG_ARM64_SVE=y CONFIG_ARM64_MODULE_PLTS=y CONFIG_RELOCATABLE=y @@ -501,6 +428,7 @@ CONFIG_PM_GENERIC_DOMAINS=y CONFIG_PM_GENERIC_DOMAINS_SLEEP=y CONFIG_PM_GENERIC_DOMAINS_OF=y CONFIG_CPU_PM=y +CONFIG_ENERGY_MODEL=y CONFIG_ARCH_HIBERNATION_POSSIBLE=y CONFIG_ARCH_HIBERNATION_HEADER=y CONFIG_ARCH_SUSPEND_POSSIBLE=y @@ -550,6 +478,7 @@ CONFIG_CPUFREQ_DT=m CONFIG_CPUFREQ_DT_PLATDEV=y CONFIG_ACPI_CPPC_CPUFREQ=m # CONFIG_ARM_ARMADA_37XX_CPUFREQ is not set +# CONFIG_ARM_QCOM_CPUFREQ_HW is not set CONFIG_ARM_SCMI_CPUFREQ=m CONFIG_ARM_TEGRA20_CPUFREQ=y CONFIG_ARM_TEGRA124_CPUFREQ=m @@ -570,6 +499,7 @@ CONFIG_DMIID=y CONFIG_DMI_SYSFS=y CONFIG_RASPBERRYPI_FIRMWARE=y # CONFIG_FW_CFG_SYSFS is not set +# CONFIG_INTEL_STRATIX10_SERVICE is not set CONFIG_QCOM_SCM=y CONFIG_QCOM_SCM_64=y # CONFIG_QCOM_SCM_DOWNLOAD_MODE_DEFAULT is not set @@ -591,6 +521,8 @@ CONFIG_EFI_ARMSTUB_DTB_LOADER=y # CONFIG_EFI_CAPSULE_LOADER is not set # CONFIG_EFI_TEST is not set # CONFIG_RESET_ATTACK_MITIGATION is not set +CONFIG_IMX_SCU=y +CONFIG_IMX_SCU_PD=y CONFIG_MESON_SM=y # @@ -627,6 +559,7 @@ CONFIG_ACPI_CONTAINER=y # CONFIG_ACPI_BGRT is not set CONFIG_ACPI_REDUCED_HARDWARE_ONLY=y CONFIG_ACPI_NFIT=y +# CONFIG_NFIT_SECURITY_DEBUG is not set CONFIG_HAVE_ACPI_APEI=y # CONFIG_ACPI_APEI is not set # CONFIG_PMIC_OPREGION is not set @@ -674,6 +607,7 @@ CONFIG_CRYPTO_AES_ARM64_CE_CCM=m CONFIG_CRYPTO_AES_ARM64_CE_BLK=m # CONFIG_CRYPTO_AES_ARM64_NEON_BLK is not set # CONFIG_CRYPTO_CHACHA20_NEON is not set +CONFIG_CRYPTO_NHPOLY1305_NEON=m # CONFIG_CRYPTO_AES_ARM64_BS is not set # @@ -785,7 +719,6 @@ CONFIG_BLK_DEV_THROTTLING=y # CONFIG_BLK_CMDLINE_PARSER is not set CONFIG_BLK_WBT=y # CONFIG_BLK_CGROUP_IOLATENCY is not set -# CONFIG_BLK_WBT_SQ is not set CONFIG_BLK_WBT_MQ=y CONFIG_BLK_DEBUG_FS=y CONFIG_BLK_SED_OPAL=y @@ -822,14 +755,6 @@ CONFIG_BLK_PM=y # # IO Schedulers # -CONFIG_IOSCHED_NOOP=y -CONFIG_IOSCHED_DEADLINE=y -CONFIG_IOSCHED_CFQ=y -CONFIG_CFQ_GROUP_IOSCHED=y -# CONFIG_DEFAULT_DEADLINE is not set -CONFIG_DEFAULT_CFQ=y -# CONFIG_DEFAULT_NOOP is not set -CONFIG_DEFAULT_IOSCHED="cfq" CONFIG_MQ_IOSCHED_DEADLINE=y CONFIG_MQ_IOSCHED_KYBER=m CONFIG_IOSCHED_BFQ=m @@ -923,6 +848,7 @@ CONFIG_SPARSEMEM_VMEMMAP_ENABLE=y CONFIG_SPARSEMEM_VMEMMAP=y CONFIG_HAVE_MEMBLOCK_NODE_MAP=y CONFIG_MEMORY_ISOLATION=y +# CONFIG_MEMORY_HOTPLUG is not set CONFIG_SPLIT_PTLOCK_CPUS=4 CONFIG_MEMORY_BALLOON=y CONFIG_BALLOON_COMPACTION=y @@ -963,6 +889,7 @@ CONFIG_NET=y CONFIG_COMPAT_NETLINK_MESSAGES=y CONFIG_NET_INGRESS=y CONFIG_NET_EGRESS=y +CONFIG_SKB_EXTENSIONS=y # # Networking options @@ -1128,9 +1055,6 @@ CONFIG_NF_CT_NETLINK_HELPER=m CONFIG_NETFILTER_NETLINK_GLUE_CT=y CONFIG_NF_NAT=m CONFIG_NF_NAT_NEEDED=y -CONFIG_NF_NAT_PROTO_DCCP=y -CONFIG_NF_NAT_PROTO_UDPLITE=y -CONFIG_NF_NAT_PROTO_SCTP=y CONFIG_NF_NAT_AMANDA=m CONFIG_NF_NAT_FTP=m CONFIG_NF_NAT_IRC=m @@ -1333,7 +1257,6 @@ CONFIG_NF_REJECT_IPV4=m CONFIG_NF_NAT_IPV4=m CONFIG_NF_NAT_MASQUERADE_IPV4=y CONFIG_NF_NAT_SNMP_BASIC=m -CONFIG_NF_NAT_PROTO_GRE=m CONFIG_NF_NAT_PPTP=m CONFIG_NF_NAT_H323=m CONFIG_IP_NF_IPTABLES=m @@ -1651,6 +1574,7 @@ CONFIG_CAN_VCAN=m CONFIG_CAN_SLCAN=m CONFIG_CAN_DEV=m CONFIG_CAN_CALC_BITTIMING=y +CONFIG_CAN_FLEXCAN=m # CONFIG_CAN_GRCAN is not set # CONFIG_CAN_XILINXCAN is not set # CONFIG_CAN_C_CAN is not set @@ -1824,6 +1748,90 @@ CONFIG_HAVE_EBPF_JIT=y # CONFIG_ARM_AMBA=y CONFIG_TEGRA_AHB=y +CONFIG_HAVE_PCI=y +CONFIG_PCI=y +CONFIG_PCI_DOMAINS=y +CONFIG_PCI_DOMAINS_GENERIC=y +CONFIG_PCI_SYSCALL=y +CONFIG_PCIEPORTBUS=y +CONFIG_HOTPLUG_PCI_PCIE=y +CONFIG_PCIEAER=y +CONFIG_PCIEAER_INJECT=m +# CONFIG_PCIE_ECRC is not set +CONFIG_PCIEASPM=y +# CONFIG_PCIEASPM_DEBUG is not set +CONFIG_PCIEASPM_DEFAULT=y +# CONFIG_PCIEASPM_POWERSAVE is not set +# CONFIG_PCIEASPM_POWER_SUPERSAVE is not set +# CONFIG_PCIEASPM_PERFORMANCE is not set +CONFIG_PCIE_PME=y +CONFIG_PCIE_DPC=y +CONFIG_PCIE_PTM=y +CONFIG_PCI_MSI=y +CONFIG_PCI_MSI_IRQ_DOMAIN=y +CONFIG_PCI_QUIRKS=y +# CONFIG_PCI_DEBUG is not set +CONFIG_PCI_REALLOC_ENABLE_AUTO=y +CONFIG_PCI_STUB=m +# CONFIG_PCI_PF_STUB is not set +CONFIG_PCI_ATS=y +CONFIG_PCI_ECAM=y +CONFIG_PCI_BRIDGE_EMUL=y +CONFIG_PCI_IOV=y +# CONFIG_PCI_PRI is not set +# CONFIG_PCI_PASID is not set +CONFIG_PCI_LABEL=y +CONFIG_HOTPLUG_PCI=y +CONFIG_HOTPLUG_PCI_ACPI=y +CONFIG_HOTPLUG_PCI_ACPI_IBM=m +CONFIG_HOTPLUG_PCI_CPCI=y +CONFIG_HOTPLUG_PCI_SHPC=y + +# +# PCI controller drivers +# +CONFIG_PCI_AARDVARK=y + +# +# Cadence PCIe controllers support +# +# CONFIG_PCIE_CADENCE_HOST is not set +# CONFIG_PCI_FTPCI100 is not set +CONFIG_PCI_TEGRA=y +CONFIG_PCI_HOST_COMMON=y +CONFIG_PCI_HOST_GENERIC=y +# CONFIG_PCIE_XILINX is not set +CONFIG_PCI_XGENE=y +CONFIG_PCI_XGENE_MSI=y +CONFIG_PCI_HOST_THUNDER_PEM=y +CONFIG_PCI_HOST_THUNDER_ECAM=y +CONFIG_PCIE_ROCKCHIP=y +CONFIG_PCIE_ROCKCHIP_HOST=m + +# +# DesignWare PCI Core Support +# +CONFIG_PCIE_DW=y +CONFIG_PCIE_DW_HOST=y +# CONFIG_PCIE_DW_PLAT_HOST is not set +CONFIG_PCI_HISI=y +CONFIG_PCIE_QCOM=y +CONFIG_PCIE_ARMADA_8K=y +CONFIG_PCIE_KIRIN=y +# CONFIG_PCIE_HISI_STB is not set +# CONFIG_PCI_MESON is not set + +# +# PCI Endpoint +# +# CONFIG_PCI_ENDPOINT is not set + +# +# PCI switch controller drivers +# +# CONFIG_PCI_SW_SWITCHTEC is not set +# CONFIG_PCCARD is not set +# CONFIG_RAPIDIO is not set # # Generic Driver Options @@ -1877,6 +1885,7 @@ CONFIG_GENERIC_ARCH_TOPOLOGY=y # # CONFIG_BRCMSTB_GISB_ARB is not set # CONFIG_HISILICON_LPC is not set +# CONFIG_IMX_WEIM is not set CONFIG_QCOM_EBI2=y # CONFIG_SIMPLE_PM_BUS is not set CONFIG_SUN50I_DE2_BUS=y @@ -1892,7 +1901,6 @@ CONFIG_GNSS_SIRF_SERIAL=m CONFIG_GNSS_UBX_SERIAL=m CONFIG_MTD=m # CONFIG_MTD_TESTS is not set -# CONFIG_MTD_REDBOOT_PARTS is not set # CONFIG_MTD_CMDLINE_PARTS is not set # CONFIG_MTD_AFS_PARTS is not set CONFIG_MTD_OF_PARTS=m @@ -1901,6 +1909,7 @@ CONFIG_MTD_AR7_PARTS=m # # Partition parsers # +# CONFIG_MTD_REDBOOT_PARTS is not set # # User Modules And Translation Layers @@ -1937,7 +1946,6 @@ CONFIG_MTD_RAM=m # # CONFIG_MTD_COMPLEX_MAPPINGS is not set # CONFIG_MTD_PHYSMAP is not set -# CONFIG_MTD_PHYSMAP_OF is not set CONFIG_MTD_INTEL_VR_NOR=m CONFIG_MTD_PLATRAM=m @@ -1978,6 +1986,7 @@ CONFIG_MTD_SPI_NOR=m # CONFIG_MTD_MT81xx_NOR is not set CONFIG_MTD_SPI_NOR_USE_4K_SECTORS=y # CONFIG_SPI_CADENCE_QUADSPI is not set +CONFIG_SPI_FSL_QUADSPI=m CONFIG_SPI_HISI_SFC=m CONFIG_MTD_UBI=m CONFIG_MTD_UBI_WL_THRESHOLD=4096 @@ -2046,11 +2055,13 @@ CONFIG_NVME_MULTIPATH=y CONFIG_NVME_FABRICS=m CONFIG_NVME_RDMA=m CONFIG_NVME_FC=m +CONFIG_NVME_TCP=m CONFIG_NVME_TARGET=m # CONFIG_NVME_TARGET_LOOP is not set CONFIG_NVME_TARGET_RDMA=m CONFIG_NVME_TARGET_FC=m # CONFIG_NVME_TARGET_FCLOOP is not set +CONFIG_NVME_TARGET_TCP=m # # Misc devices @@ -2082,6 +2093,7 @@ CONFIG_SRAM=y CONFIG_VEXPRESS_SYSCFG=y # CONFIG_PCI_ENDPOINT_TEST is not set CONFIG_MISC_RTSX=m +CONFIG_PVPANIC=m CONFIG_C2PORT=m # @@ -2143,6 +2155,7 @@ CONFIG_ALTERA_STAPL=m # # CONFIG_GENWQE is not set # CONFIG_ECHO is not set +CONFIG_MISC_ALCOR_PCI=m CONFIG_MISC_RTSX_PCI=m CONFIG_MISC_RTSX_USB=m @@ -2154,7 +2167,6 @@ CONFIG_RAID_ATTRS=m CONFIG_SCSI=m CONFIG_SCSI_DMA=y CONFIG_SCSI_NETLINK=y -# CONFIG_SCSI_MQ_DEFAULT is not set # CONFIG_SCSI_PROC_FS is not set # @@ -2271,7 +2283,6 @@ CONFIG_SCSI_PM8001=m CONFIG_SCSI_BFA_FC=m CONFIG_SCSI_VIRTIO=m CONFIG_SCSI_CHELSIO_FCOE=m -CONFIG_SCSI_LOWLEVEL_PCMCIA=y CONFIG_SCSI_DH=y CONFIG_SCSI_DH_RDAC=m CONFIG_SCSI_DH_HP_SW=m @@ -2294,6 +2305,7 @@ CONFIG_SATA_PMP=y CONFIG_SATA_AHCI=m CONFIG_SATA_MOBILE_LPM_POLICY=0 CONFIG_SATA_AHCI_PLATFORM=m +CONFIG_AHCI_IMX=m # CONFIG_AHCI_CEVA is not set CONFIG_AHCI_MVEBU=m # CONFIG_AHCI_SUNXI is not set @@ -2344,6 +2356,7 @@ CONFIG_PATA_CMD64X=m # CONFIG_PATA_HPT37X is not set # CONFIG_PATA_HPT3X2N is not set # CONFIG_PATA_HPT3X3 is not set +# CONFIG_PATA_IMX is not set CONFIG_PATA_IT8213=m CONFIG_PATA_IT821X=m CONFIG_PATA_JMICRON=m @@ -2517,7 +2530,7 @@ CONFIG_ATM_SOLOS=m # CONFIG_NET_DSA_LANTIQ_GSWIP is not set # CONFIG_NET_DSA_MT7530 is not set CONFIG_NET_DSA_MV88E6060=m -# CONFIG_MICROCHIP_KSZ is not set +# CONFIG_NET_DSA_MICROCHIP_KSZ9477 is not set CONFIG_NET_DSA_MV88E6XXX=m CONFIG_NET_DSA_MV88E6XXX_GLOBAL2=y # CONFIG_NET_DSA_MV88E6XXX_PTP is not set @@ -2627,6 +2640,11 @@ CONFIG_BE2NET_LANCER=y CONFIG_BE2NET_SKYHAWK=y CONFIG_NET_VENDOR_EZCHIP=y # CONFIG_EZCHIP_NPS_MANAGEMENT_ENET is not set +CONFIG_NET_VENDOR_FREESCALE=y +CONFIG_FEC=m +CONFIG_FSL_PQ_MDIO=m +CONFIG_FSL_XGMAC_MDIO=m +CONFIG_GIANFAR=m CONFIG_NET_VENDOR_HISILICON=y CONFIG_HIX5HD2_GMAC=m CONFIG_HISI_FEMAC=m @@ -2944,6 +2962,7 @@ CONFIG_USB_IPHETH=m CONFIG_USB_SIERRA_NET=m CONFIG_USB_VL600=m CONFIG_USB_NET_CH9200=m +CONFIG_USB_NET_AQC111=m CONFIG_WLAN=y # CONFIG_WIRELESS_WDS is not set CONFIG_WLAN_VENDOR_ADMTEK=y @@ -3177,9 +3196,11 @@ CONFIG_WLAN_VENDOR_ZYDAS=y CONFIG_ZD1211RW=m # CONFIG_ZD1211RW_DEBUG is not set CONFIG_WLAN_VENDOR_QUANTENNA=y -# CONFIG_QTNFMAC_PEARL_PCIE is not set +CONFIG_QTNFMAC=m +CONFIG_QTNFMAC_PCIE=m CONFIG_MAC80211_HWSIM=m CONFIG_USB_NET_RNDIS_WLAN=m +CONFIG_VIRT_WIFI=m # # WiMAX Wireless Broadband devices @@ -3251,6 +3272,7 @@ CONFIG_KEYBOARD_LM8323=m CONFIG_KEYBOARD_MAX7359=m # CONFIG_KEYBOARD_MCS is not set # CONFIG_KEYBOARD_MPR121 is not set +CONFIG_KEYBOARD_IMX=m # CONFIG_KEYBOARD_NEWTON is not set CONFIG_KEYBOARD_TEGRA=m CONFIG_KEYBOARD_OPENCORES=m @@ -3360,6 +3382,7 @@ CONFIG_SERIO_ALTERA_PS2=m # CONFIG_SERIO_PS2MULT is not set # CONFIG_SERIO_ARC_PS2 is not set # CONFIG_SERIO_APBPS2 is not set +# CONFIG_SERIO_OLPC_APSP is not set # CONFIG_SERIO_SUN4I_PS2 is not set # CONFIG_SERIO_GPIO_PS2 is not set # CONFIG_USERIO is not set @@ -3423,6 +3446,7 @@ CONFIG_SERIAL_MESON_CONSOLE=y CONFIG_SERIAL_TEGRA=y # CONFIG_SERIAL_MAX3100 is not set # CONFIG_SERIAL_MAX310X is not set +CONFIG_SERIAL_IMX=m # CONFIG_SERIAL_UARTLITE is not set CONFIG_SERIAL_CORE=y CONFIG_SERIAL_CORE_CONSOLE=y @@ -3443,8 +3467,10 @@ CONFIG_SERIAL_RP2_NR_UARTS=32 # CONFIG_SERIAL_CONEXANT_DIGICOLOR is not set CONFIG_SERIAL_MVEBU_UART=y CONFIG_SERIAL_MVEBU_CONSOLE=y +CONFIG_SERIAL_MCTRL_GPIO=m CONFIG_SERIAL_DEV_BUS=m CONFIG_TTY_PRINTK=m +CONFIG_TTY_PRINTK_LEVEL=6 # CONFIG_PRINTER is not set # CONFIG_PPDEV is not set CONFIG_HVC_DRIVER=y @@ -3466,16 +3492,13 @@ CONFIG_HW_RANDOM=m CONFIG_HW_RANDOM_BCM2835=m # CONFIG_HW_RANDOM_OMAP is not set CONFIG_HW_RANDOM_VIRTIO=m +CONFIG_HW_RANDOM_IMX_RNGC=m CONFIG_HW_RANDOM_HISI=m CONFIG_HW_RANDOM_XGENE=m CONFIG_HW_RANDOM_MESON=m CONFIG_HW_RANDOM_CAVIUM=m # CONFIG_R3964 is not set # CONFIG_APPLICOM is not set - -# -# PCMCIA character devices -# # CONFIG_RAW_DRIVER is not set # CONFIG_TCG_TPM is not set CONFIG_DEVPORT=y @@ -3550,6 +3573,8 @@ CONFIG_I2C_DESIGNWARE_PLATFORM=m # CONFIG_I2C_DESIGNWARE_PCI is not set # CONFIG_I2C_EMEV2 is not set # CONFIG_I2C_GPIO is not set +CONFIG_I2C_IMX=m +CONFIG_I2C_IMX_LPI2C=m CONFIG_I2C_MESON=m CONFIG_I2C_MV64XXX=m # CONFIG_I2C_NOMADIK is not set @@ -3590,6 +3615,9 @@ CONFIG_I2C_XGENE_SLIMPRO=m # CONFIG_I2C_DEBUG_CORE is not set # CONFIG_I2C_DEBUG_ALGO is not set # CONFIG_I2C_DEBUG_BUS is not set +CONFIG_I3C=m +CONFIG_CDNS_I3C_MASTER=m +CONFIG_DW_I3C_MASTER=m CONFIG_SPI=y # CONFIG_SPI_DEBUG is not set CONFIG_SPI_MASTER=y @@ -3607,7 +3635,9 @@ CONFIG_SPI_BITBANG=m CONFIG_SPI_BUTTERFLY=m # CONFIG_SPI_CADENCE is not set # CONFIG_SPI_DESIGNWARE is not set +CONFIG_SPI_FSL_LPSPI=m # CONFIG_SPI_GPIO is not set +CONFIG_SPI_IMX=m CONFIG_SPI_LM70_LLP=m # CONFIG_SPI_FSL_SPI is not set # CONFIG_SPI_MESON_SPICC is not set @@ -3623,6 +3653,7 @@ CONFIG_SPI_QUP=m # CONFIG_SPI_SC18IS602 is not set # CONFIG_SPI_SUN4I is not set # CONFIG_SPI_SUN6I is not set +# CONFIG_SPI_MXIC is not set CONFIG_SPI_TEGRA114=m CONFIG_SPI_TEGRA20_SFLASH=m CONFIG_SPI_TEGRA20_SLINK=m @@ -3661,6 +3692,7 @@ CONFIG_PPS_CLIENT_PARPORT=m # PTP clock support # CONFIG_PTP_1588_CLOCK=y +CONFIG_PTP_1588_CLOCK_QORIQ=m # # Enable PHYLIB and NETWORK_PHY_TIMESTAMPING to see the additional clocks. @@ -3680,7 +3712,12 @@ CONFIG_PINCTRL_SINGLE=y # CONFIG_PINCTRL_SX150X is not set CONFIG_PINCTRL_MAX77620=y # CONFIG_PINCTRL_RK805 is not set +# CONFIG_PINCTRL_OCELOT is not set CONFIG_PINCTRL_BCM2835=y +CONFIG_PINCTRL_IMX=y +CONFIG_PINCTRL_IMX_SCU=y +CONFIG_PINCTRL_IMX8MQ=y +CONFIG_PINCTRL_IMX8QXP=y CONFIG_PINCTRL_MVEBU=y CONFIG_PINCTRL_ARMADA_AP806=y CONFIG_PINCTRL_ARMADA_CP110=y @@ -3740,6 +3777,7 @@ CONFIG_GPIO_GENERIC=y # CONFIG_GPIO_ALTERA is not set # CONFIG_GPIO_AMDPT is not set CONFIG_GPIO_RASPBERRYPI_EXP=m +CONFIG_GPIO_CADENCE=m # CONFIG_GPIO_DWAPB is not set # CONFIG_GPIO_EXAR is not set # CONFIG_GPIO_FTGPIO010 is not set @@ -3749,7 +3787,9 @@ CONFIG_GPIO_GENERIC_PLATFORM=y CONFIG_GPIO_MB86S7X=m # CONFIG_GPIO_MOCKUP is not set CONFIG_GPIO_MVEBU=y +CONFIG_GPIO_MXC=y CONFIG_GPIO_PL061=y +# CONFIG_GPIO_SAMA5D2_PIOBU is not set # CONFIG_GPIO_SYSCON is not set CONFIG_GPIO_TEGRA=y # CONFIG_GPIO_THUNDERX is not set @@ -3806,6 +3846,7 @@ CONFIG_W1_CON=y # CONFIG_W1_MASTER_MATROX is not set CONFIG_W1_MASTER_DS2490=m CONFIG_W1_MASTER_DS2482=m +CONFIG_W1_MASTER_MXC=m # CONFIG_W1_MASTER_DS1WM is not set CONFIG_W1_MASTER_GPIO=m @@ -3980,6 +4021,7 @@ CONFIG_SENSORS_NCT6775=m # CONFIG_SENSORS_NCT7802 is not set # CONFIG_SENSORS_NCT7904 is not set # CONFIG_SENSORS_NPCM7XX is not set +# CONFIG_SENSORS_OCC_P8_I2C is not set # CONFIG_SENSORS_PCF8591 is not set # CONFIG_PMBUS is not set # CONFIG_SENSORS_PWM_FAN is not set @@ -4057,15 +4099,12 @@ CONFIG_CPU_THERMAL=y # CONFIG_DEVFREQ_THERMAL is not set # CONFIG_THERMAL_EMULATION is not set CONFIG_HISI_THERMAL=m +CONFIG_IMX_THERMAL=m # CONFIG_MAX77620_THERMAL is not set # CONFIG_QORIQ_THERMAL is not set # CONFIG_ROCKCHIP_THERMAL is not set CONFIG_ARMADA_THERMAL=m -# -# ACPI INT340X thermal drivers -# - # # Broadcom thermal drivers # @@ -4076,13 +4115,13 @@ CONFIG_BCM2835_THERMAL=m # CONFIG_TEGRA_SOCTHERM=y # CONFIG_TEGRA_BPMP_THERMAL is not set -CONFIG_QCOM_SPMI_TEMP_ALARM=m # CONFIG_GENERIC_ADC_THERMAL is not set # # Qualcomm thermal drivers # CONFIG_QCOM_TSENS=m +CONFIG_QCOM_SPMI_TEMP_ALARM=m CONFIG_WATCHDOG=y CONFIG_WATCHDOG_CORE=y # CONFIG_WATCHDOG_NOWAYOUT is not set @@ -4105,10 +4144,12 @@ CONFIG_DW_WATCHDOG=m CONFIG_SUNXI_WATCHDOG=m # CONFIG_MAX63XX_WATCHDOG is not set # CONFIG_MAX77620_WATCHDOG is not set +CONFIG_IMX2_WDT=m CONFIG_TEGRA_WATCHDOG=m CONFIG_QCOM_WDT=m CONFIG_MESON_GXBB_WATCHDOG=m CONFIG_MESON_WATCHDOG=m +CONFIG_PM8916_WATCHDOG=m # CONFIG_ALIM7101_WDT is not set # CONFIG_I6300ESB_WDT is not set CONFIG_BCM2835_WDT=m @@ -4163,7 +4204,6 @@ CONFIG_MFD_CORE=y # CONFIG_MFD_AS3722 is not set # CONFIG_PMIC_ADP5520 is not set # CONFIG_MFD_AAT2870_CORE is not set -# CONFIG_MFD_AT91_USART is not set # CONFIG_MFD_ATMEL_FLEXCOM is not set # CONFIG_MFD_ATMEL_HLCDC is not set # CONFIG_MFD_BCM590XX is not set @@ -4300,6 +4340,7 @@ CONFIG_REGULATOR_MAX77620=m # CONFIG_REGULATOR_MAX8660 is not set # CONFIG_REGULATOR_MAX8952 is not set # CONFIG_REGULATOR_MAX8973 is not set +# CONFIG_REGULATOR_MCP16502 is not set # CONFIG_REGULATOR_MT6311 is not set # CONFIG_REGULATOR_PFUZE100 is not set # CONFIG_REGULATOR_PV88060 is not set @@ -4358,6 +4399,7 @@ CONFIG_RC_LOOPBACK=m # CONFIG_IR_SUNXI is not set # CONFIG_IR_SERIAL is not set # CONFIG_IR_SIR is not set +CONFIG_RC_XBOX_DVD=m CONFIG_MEDIA_SUPPORT=m # @@ -4377,7 +4419,6 @@ CONFIG_VIDEO_DEV=m CONFIG_VIDEO_V4L2=m # CONFIG_VIDEO_ADV_DEBUG is not set # CONFIG_VIDEO_FIXED_MINOR_RANGES is not set -# CONFIG_VIDEO_PCI_SKELETON is not set CONFIG_VIDEO_TUNER=m CONFIG_V4L2_MEM2MEM_DEV=m CONFIG_V4L2_FWNODE=m @@ -4636,8 +4677,11 @@ CONFIG_DVB_NETUP_UNIDVB=m CONFIG_V4L_PLATFORM_DRIVERS=y CONFIG_VIDEO_CAFE_CCIC=m CONFIG_VIDEO_CADENCE=y +# CONFIG_VIDEO_ASPEED is not set # CONFIG_SOC_CAMERA is not set CONFIG_V4L_MEM2MEM_DRIVERS=y +CONFIG_VIDEO_CODA=m +CONFIG_VIDEO_IMX_PXP=m # CONFIG_VIDEO_MEM2MEM_DEINTERLACE is not set # CONFIG_VIDEO_SH_VEU is not set # CONFIG_VIDEO_ROCKCHIP_RGA is not set @@ -5048,6 +5092,7 @@ CONFIG_DRM_AMDGPU_USERPTR=y # CONFIG_DRM_AMD_DC=y # CONFIG_DEBUG_KERNEL_DC is not set +# CONFIG_HSA_AMD is not set # # AMD Library routines @@ -5101,10 +5146,12 @@ CONFIG_DRM_PANEL_SIMPLE=m # CONFIG_DRM_PANEL_JDI_LT070ME05000 is not set # CONFIG_DRM_PANEL_SAMSUNG_LD9040 is not set # CONFIG_DRM_PANEL_LG_LG4573 is not set +# CONFIG_DRM_PANEL_OLIMEX_LCD_OLINUXINO is not set # CONFIG_DRM_PANEL_ORISETECH_OTM8009A is not set # CONFIG_DRM_PANEL_PANASONIC_VVX10F034N00 is not set # CONFIG_DRM_PANEL_RASPBERRYPI_TOUCHSCREEN is not set # CONFIG_DRM_PANEL_RAYDIUM_RM68200 is not set +# CONFIG_DRM_PANEL_SAMSUNG_S6D16D0 is not set # CONFIG_DRM_PANEL_SAMSUNG_S6E3HA2 is not set # CONFIG_DRM_PANEL_SAMSUNG_S6E63J0X03 is not set # CONFIG_DRM_PANEL_SAMSUNG_S6E8AA0 is not set @@ -5112,6 +5159,7 @@ CONFIG_DRM_PANEL_SIMPLE=m # CONFIG_DRM_PANEL_SHARP_LQ101R1SX01 is not set # CONFIG_DRM_PANEL_SHARP_LS043T1LE01 is not set # CONFIG_DRM_PANEL_SITRONIX_ST7789V is not set +# CONFIG_DRM_PANEL_TRULY_NT35597_WQXGA is not set CONFIG_DRM_BRIDGE=y CONFIG_DRM_PANEL_BRIDGE=y @@ -5143,6 +5191,8 @@ CONFIG_DRM_DW_HDMI=m # CONFIG_DRM_DW_HDMI_CEC is not set CONFIG_DRM_VC4=m # CONFIG_DRM_VC4_HDMI_CEC is not set +CONFIG_DRM_ETNAVIV=m +CONFIG_DRM_ETNAVIV_THERMAL=y # CONFIG_DRM_ARCPGU is not set CONFIG_DRM_HISI_HIBMC=m CONFIG_DRM_HISI_KIRIN=m @@ -5179,7 +5229,6 @@ CONFIG_FB_SYS_IMAGEBLIT=y CONFIG_FB_SYS_FOPS=y CONFIG_FB_DEFERRED_IO=y CONFIG_FB_SVGALIB=m -CONFIG_FB_BACKLIGHT=y CONFIG_FB_MODE_HELPERS=y CONFIG_FB_TILEBLITTING=y @@ -5189,6 +5238,7 @@ CONFIG_FB_TILEBLITTING=y # CONFIG_FB_CIRRUS is not set # CONFIG_FB_PM2 is not set CONFIG_FB_ARMCLCD=y +CONFIG_FB_IMX=m # CONFIG_FB_CYBER2000 is not set # CONFIG_FB_ASILIANT is not set # CONFIG_FB_IMSTT is not set @@ -5227,11 +5277,25 @@ CONFIG_XEN_FBDEV_FRONTEND=y CONFIG_FB_MB862XX=m CONFIG_FB_MB862XX_PCI_GDC=y CONFIG_FB_MB862XX_I2C=y +# CONFIG_FB_MX3 is not set +# CONFIG_FB_MXS is not set CONFIG_FB_SIMPLE=y # CONFIG_FB_SSD1307 is not set # CONFIG_FB_SM712 is not set CONFIG_BACKLIGHT_LCD_SUPPORT=y -# CONFIG_LCD_CLASS_DEVICE is not set +CONFIG_LCD_CLASS_DEVICE=m +CONFIG_LCD_L4F00242T03=m +CONFIG_LCD_LMS283GF05=m +CONFIG_LCD_LTV350QV=m +CONFIG_LCD_ILI922X=m +CONFIG_LCD_ILI9320=m +CONFIG_LCD_TDO24M=m +CONFIG_LCD_VGG2432A4=m +CONFIG_LCD_PLATFORM=m +CONFIG_LCD_AMS369FG06=m +CONFIG_LCD_LMS501KF03=m +CONFIG_LCD_HX8357=m +CONFIG_LCD_OTM3225A=m CONFIG_BACKLIGHT_CLASS_DEVICE=y CONFIG_BACKLIGHT_GENERIC=m CONFIG_BACKLIGHT_PWM=m @@ -5272,6 +5336,7 @@ CONFIG_SND_DMAENGINE_PCM=m CONFIG_SND_HWDEP=m CONFIG_SND_SEQ_DEVICE=m CONFIG_SND_RAWMIDI=m +CONFIG_SND_COMPRESS_OFFLOAD=m CONFIG_SND_JACK=y CONFIG_SND_JACK_INPUT_DEV=y CONFIG_SND_OSSEMUL=y @@ -5419,6 +5484,7 @@ CONFIG_SND_FIREWIRE_TASCAM=m # CONFIG_SND_FIREFACE is not set CONFIG_SND_SOC=m CONFIG_SND_SOC_GENERIC_DMAENGINE_PCM=y +CONFIG_SND_SOC_COMPRESS=y # CONFIG_SND_SOC_AMD_ACP is not set # CONFIG_SND_ATMEL_SOC is not set CONFIG_SND_BCM2835_SOC_I2S=m @@ -5432,11 +5498,21 @@ CONFIG_SND_BCM2835_SOC_I2S=m # Common SoC Audio options for Freescale CPUs: # # CONFIG_SND_SOC_FSL_ASRC is not set -# CONFIG_SND_SOC_FSL_SAI is not set -# CONFIG_SND_SOC_FSL_SSI is not set -# CONFIG_SND_SOC_FSL_SPDIF is not set -# CONFIG_SND_SOC_FSL_ESAI is not set -# CONFIG_SND_SOC_IMX_AUDMUX is not set +CONFIG_SND_SOC_FSL_SAI=m +CONFIG_SND_SOC_FSL_SSI=m +CONFIG_SND_SOC_FSL_SPDIF=m +CONFIG_SND_SOC_FSL_ESAI=m +CONFIG_SND_SOC_IMX_PCM_DMA=m +CONFIG_SND_SOC_IMX_AUDMUX=m +CONFIG_SND_IMX_SOC=m + +# +# SoC Audio support for Freescale i.MX boards: +# +CONFIG_SND_SOC_IMX_ES8328=m +CONFIG_SND_SOC_IMX_SGTL5000=m +CONFIG_SND_SOC_IMX_SPDIF=m +CONFIG_SND_SOC_FSL_ASOC_CARD=m CONFIG_SND_I2S_HI6210_I2S=m # CONFIG_SND_KIRKWOOD_SOC is not set # CONFIG_SND_SOC_IMG is not set @@ -5450,6 +5526,7 @@ CONFIG_SND_I2S_HI6210_I2S=m # CONFIG_SND_MESON_AXG_TDMOUT is not set # CONFIG_SND_MESON_AXG_SOUND_CARD is not set # CONFIG_SND_MESON_AXG_SPDIFOUT is not set +# CONFIG_SND_MESON_AXG_SPDIFIN is not set # CONFIG_SND_MESON_AXG_PDM is not set CONFIG_SND_SOC_QCOM=m CONFIG_SND_SOC_LPASS_CPU=m @@ -5500,6 +5577,7 @@ CONFIG_SND_SOC_TEGRA_ALC5632=m CONFIG_SND_SOC_TEGRA_MAX98090=m CONFIG_SND_SOC_TEGRA_RT5677=m # CONFIG_SND_SOC_TEGRA_SGTL5000 is not set +CONFIG_SND_SOC_XILINX_I2S=m # CONFIG_SND_SOC_XTFPGA_I2S is not set # CONFIG_ZX_TDM is not set CONFIG_SND_SOC_I2C_AND_SPI=m @@ -5513,6 +5591,7 @@ CONFIG_SND_SOC_I2C_AND_SPI=m # CONFIG_SND_SOC_ADAU1761_SPI is not set # CONFIG_SND_SOC_ADAU7002 is not set # CONFIG_SND_SOC_AK4104 is not set +# CONFIG_SND_SOC_AK4118 is not set # CONFIG_SND_SOC_AK4458 is not set # CONFIG_SND_SOC_AK4554 is not set # CONFIG_SND_SOC_AK4613 is not set @@ -5545,8 +5624,9 @@ CONFIG_SND_SOC_HDMI_CODEC=m # CONFIG_SND_SOC_ES7134 is not set # CONFIG_SND_SOC_ES7241 is not set # CONFIG_SND_SOC_ES8316 is not set -# CONFIG_SND_SOC_ES8328_I2C is not set -# CONFIG_SND_SOC_ES8328_SPI is not set +CONFIG_SND_SOC_ES8328=m +CONFIG_SND_SOC_ES8328_I2C=m +CONFIG_SND_SOC_ES8328_SPI=m # CONFIG_SND_SOC_GTM601 is not set # CONFIG_SND_SOC_INNO_RK3036 is not set # CONFIG_SND_SOC_MAX98088 is not set @@ -5574,9 +5654,10 @@ CONFIG_SND_SOC_RL6231=m # CONFIG_SND_SOC_RT5616 is not set # CONFIG_SND_SOC_RT5631 is not set CONFIG_SND_SOC_RT5640=m +CONFIG_SND_SOC_RT5663=m CONFIG_SND_SOC_RT5677=m CONFIG_SND_SOC_RT5677_SPI=m -# CONFIG_SND_SOC_SGTL5000 is not set +CONFIG_SND_SOC_SGTL5000=m # CONFIG_SND_SOC_SIMPLE_AMPLIFIER is not set # CONFIG_SND_SOC_SIRF_AUDIO_CODEC is not set # CONFIG_SND_SOC_SPDIF is not set @@ -5721,6 +5802,7 @@ CONFIG_HID_PETALYNX=m CONFIG_HID_PICOLCD=m CONFIG_HID_PICOLCD_FB=y CONFIG_HID_PICOLCD_BACKLIGHT=y +# CONFIG_HID_PICOLCD_LCD is not set CONFIG_HID_PICOLCD_LEDS=y CONFIG_HID_PICOLCD_CIR=y CONFIG_HID_PLANTRONICS=m @@ -5810,6 +5892,7 @@ CONFIG_USB_EHCI_HCD=m CONFIG_USB_EHCI_ROOT_HUB_TT=y CONFIG_USB_EHCI_TT_NEWSCHED=y CONFIG_USB_EHCI_PCI=m +CONFIG_USB_EHCI_MXC=m CONFIG_USB_EHCI_HCD_ORION=m CONFIG_USB_EHCI_TEGRA=m CONFIG_USB_EHCI_HCD_PLATFORM=m @@ -6026,6 +6109,7 @@ CONFIG_USB_PHY=y CONFIG_NOP_USB_XCEIV=m # CONFIG_USB_GPIO_VBUS is not set # CONFIG_USB_ISP1301 is not set +CONFIG_USB_MXS_PHY=m CONFIG_USB_TEGRA_PHY=m CONFIG_USB_ULPI=y CONFIG_USB_ULPI_VIEWPORT=y @@ -6040,6 +6124,7 @@ CONFIG_USB_GADGET_STORAGE_NUM_BUFFERS=2 # # USB Peripheral Controller # +CONFIG_USB_FSL_USB2=m # CONFIG_USB_FOTG210_UDC is not set # CONFIG_USB_GR_UDC is not set # CONFIG_USB_R8A66597 is not set @@ -6123,6 +6208,7 @@ CONFIG_USB_G_SERIAL=m # CONFIG_USB_G_DBGP is not set # CONFIG_USB_G_WEBCAM is not set # CONFIG_TYPEC is not set +CONFIG_USB_ROLE_SWITCH=m CONFIG_USB_LED_TRIG=y CONFIG_USB_ULPI_BUS=m CONFIG_UWB=m @@ -6153,15 +6239,19 @@ CONFIG_MMC_SDHCI_ACPI=m CONFIG_MMC_SDHCI_PLTFM=m CONFIG_MMC_SDHCI_OF_ARASAN=m # CONFIG_MMC_SDHCI_OF_AT91 is not set +CONFIG_MMC_SDHCI_OF_ESDHC=m # CONFIG_MMC_SDHCI_OF_DWCMSHC is not set # CONFIG_MMC_SDHCI_CADENCE is not set +CONFIG_MMC_SDHCI_ESDHC_IMX=m CONFIG_MMC_SDHCI_TEGRA=m # CONFIG_MMC_SDHCI_PXAV3 is not set CONFIG_MMC_SDHCI_F_SDH30=m CONFIG_MMC_SDHCI_IPROC=m CONFIG_MMC_MESON_GX=m # CONFIG_MMC_MESON_MX_SDIO is not set +CONFIG_MMC_ALCOR=m CONFIG_MMC_SDHCI_MSM=m +CONFIG_MMC_MXC=m CONFIG_MMC_TIFM_SD=m CONFIG_MMC_SPI=m CONFIG_MMC_CB710=m @@ -6186,6 +6276,7 @@ CONFIG_MMC_BCM2835=m # CONFIG_MMC_MTK is not set CONFIG_MMC_SDHCI_XENON=m # CONFIG_MMC_SDHCI_OMAP is not set +CONFIG_MMC_SDHCI_AM654=m CONFIG_MEMSTICK=m # CONFIG_MEMSTICK_DEBUG is not set @@ -6273,6 +6364,7 @@ CONFIG_LEDS_TRIGGER_CAMERA=m CONFIG_LEDS_TRIGGER_PANIC=y # CONFIG_LEDS_TRIGGER_NETDEV is not set # CONFIG_LEDS_TRIGGER_PATTERN is not set +CONFIG_LEDS_TRIGGER_AUDIO=m CONFIG_ACCESSIBILITY=y CONFIG_A11Y_BRAILLE_CONSOLE=y CONFIG_INFINIBAND=m @@ -6414,6 +6506,7 @@ CONFIG_RTC_DRV_EFI=y # # on-CPU RTC drivers # +CONFIG_RTC_DRV_IMXDI=m # CONFIG_RTC_DRV_PL030 is not set CONFIG_RTC_DRV_PL031=y CONFIG_RTC_DRV_SUN6I=y @@ -6422,7 +6515,10 @@ CONFIG_RTC_DRV_ARMADA38X=m # CONFIG_RTC_DRV_FTRTC010 is not set CONFIG_RTC_DRV_PM8XXX=m CONFIG_RTC_DRV_TEGRA=y +CONFIG_RTC_DRV_MXC=m +CONFIG_RTC_DRV_MXC_V2=m # CONFIG_RTC_DRV_SNVS is not set +CONFIG_RTC_DRV_IMX_SC=m CONFIG_RTC_DRV_XGENE=y # CONFIG_RTC_DRV_R7301 is not set @@ -6448,10 +6544,15 @@ CONFIG_DMA_BCM2835=y CONFIG_DMA_SUN6I=m # CONFIG_DW_AXI_DMAC is not set # CONFIG_FSL_EDMA is not set +CONFIG_IMX_DMA=m +CONFIG_IMX_SDMA=m # CONFIG_INTEL_IDMA64 is not set CONFIG_K3_DMA=m CONFIG_MV_XOR=y CONFIG_MV_XOR_V2=y +# CONFIG_MXS_DMA is not set +CONFIG_MX3_IPU=y +CONFIG_MX3_IPU_IRQS=4 CONFIG_PL330_DMA=m CONFIG_TEGRA20_APB_DMA=y CONFIG_TEGRA210_ADMA=y @@ -6597,7 +6698,6 @@ CONFIG_88EU_AP_MODE=y # # Resolver to digital converters # -# CONFIG_AD2S90 is not set # CONFIG_AD2S1210 is not set # CONFIG_FB_SM750 is not set # CONFIG_FB_XGI is not set @@ -6692,6 +6792,7 @@ CONFIG_COMMON_CLK_SCMI=m CONFIG_COMMON_CLK_XGENE=y # CONFIG_COMMON_CLK_PWM is not set # CONFIG_COMMON_CLK_VC5 is not set +# CONFIG_COMMON_CLK_BD718XX is not set CONFIG_COMMON_CLK_HI3516CV300=y CONFIG_COMMON_CLK_HI3519=y CONFIG_COMMON_CLK_HI3660=y @@ -6701,6 +6802,10 @@ CONFIG_COMMON_CLK_HI6220=y CONFIG_RESET_HISI=y CONFIG_STUB_CLK_HI6220=y # CONFIG_STUB_CLK_HI3660 is not set +CONFIG_MXC_CLK=y +CONFIG_MXC_CLK_SCU=y +CONFIG_CLK_IMX8MQ=y +CONFIG_CLK_IMX8QXP=y CONFIG_COMMON_CLK_AMLOGIC=y CONFIG_COMMON_CLK_AMLOGIC_AUDIO=y CONFIG_COMMON_CLK_MESON_AO=y @@ -6741,8 +6846,10 @@ CONFIG_MSM_MMCC_8996=y # CONFIG_SDM_CAMCC_845 is not set # CONFIG_SDM_GCC_660 is not set CONFIG_SDM_GCC_845=m +CONFIG_SDM_GPUCC_845=m CONFIG_SDM_VIDEOCC_845=m CONFIG_SDM_DISPCC_845=m +CONFIG_SDM_LPASSCC_845=m # CONFIG_SPMI_PMIC_CLKDIV is not set # CONFIG_QCOM_HFPLL is not set # CONFIG_KPSS_XCC is not set @@ -6775,6 +6882,7 @@ CONFIG_ARM_TIMER_SP804=y CONFIG_CLKSRC_VERSATILE=y CONFIG_MAILBOX=y # CONFIG_ARM_MHU is not set +CONFIG_IMX_MBOX=m # CONFIG_PLATFORM_MHU is not set # CONFIG_PL320_MBOX is not set # CONFIG_ROCKCHIP_MBOX is not set @@ -6830,7 +6938,8 @@ CONFIG_RPMSG_QCOM_GLINK_RPM=m # # Amlogic SoC drivers # -# CONFIG_MESON_CANVAS is not set +CONFIG_MESON_CANVAS=m +CONFIG_MESON_CLK_MEASURE=y CONFIG_MESON_GX_SOCINFO=y CONFIG_MESON_GX_PM_DOMAINS=y CONFIG_MESON_MX_SOCINFO=y @@ -6844,6 +6953,7 @@ CONFIG_RASPBERRYPI_POWER=y # # NXP/Freescale QorIQ SoC drivers # +CONFIG_FSL_GUTS=y # # i.MX SoC drivers @@ -6962,6 +7072,8 @@ CONFIG_HID_SENSOR_ACCEL_3D=m # # Analog to digital converters # +CONFIG_AD_SIGMA_DELTA=m +CONFIG_AD7124=m # CONFIG_AD7266 is not set # CONFIG_AD7291 is not set # CONFIG_AD7298 is not set @@ -6971,6 +7083,7 @@ CONFIG_HID_SENSOR_ACCEL_3D=m # CONFIG_AD7793 is not set # CONFIG_AD7887 is not set # CONFIG_AD7923 is not set +# CONFIG_AD7949 is not set # CONFIG_AD799X is not set CONFIG_AXP20X_ADC=m CONFIG_AXP288_ADC=m @@ -6979,6 +7092,7 @@ CONFIG_AXP288_ADC=m # CONFIG_HI8435 is not set # CONFIG_HX711 is not set # CONFIG_INA2XX_ADC is not set +CONFIG_IMX7D_ADC=m # CONFIG_LTC2471 is not set # CONFIG_LTC2485 is not set # CONFIG_LTC2497 is not set @@ -7080,6 +7194,7 @@ CONFIG_AD5446=m # CONFIG_MCP4922 is not set # CONFIG_TI_DAC082S085 is not set # CONFIG_TI_DAC5571 is not set +# CONFIG_TI_DAC7311 is not set # CONFIG_VF610_DAC is not set # @@ -7190,6 +7305,7 @@ CONFIG_HID_SENSOR_PROX=m # CONFIG_TSL4531 is not set # CONFIG_US5182D is not set # CONFIG_VCNL4000 is not set +# CONFIG_VCNL4035 is not set # CONFIG_VEML6070 is not set # CONFIG_VL6180 is not set # CONFIG_ZOPT2201 is not set @@ -7208,6 +7324,8 @@ CONFIG_HID_SENSOR_MAGNETOMETER_3D=m # CONFIG_IIO_ST_MAGN_3AXIS is not set # CONFIG_SENSORS_HMC5843_I2C is not set # CONFIG_SENSORS_HMC5843_SPI is not set +# CONFIG_SENSORS_RM3100_I2C is not set +# CONFIG_SENSORS_RM3100_SPI is not set # # Multiplexers @@ -7236,6 +7354,7 @@ CONFIG_HID_SENSOR_DEVICE_ROTATION=m # CONFIG_MCP4018 is not set # CONFIG_MCP4131 is not set # CONFIG_MCP4531 is not set +# CONFIG_MCP41010 is not set # CONFIG_TPL0102 is not set # @@ -7279,6 +7398,7 @@ CONFIG_HID_SENSOR_PRESS=m # # Resolver to digital converters # +# CONFIG_AD2S90 is not set # CONFIG_AD2S1200 is not set # @@ -7300,6 +7420,7 @@ CONFIG_PWM_BCM2835=m # CONFIG_PWM_CROS_EC is not set # CONFIG_PWM_FSL_FTM is not set # CONFIG_PWM_HIBVT is not set +CONFIG_PWM_IMX=m CONFIG_PWM_MESON=m # CONFIG_PWM_PCA9685 is not set CONFIG_PWM_ROCKCHIP=m @@ -7317,6 +7438,7 @@ CONFIG_ARM_GIC_V3=y CONFIG_ARM_GIC_V3_ITS=y CONFIG_ARM_GIC_V3_ITS_PCI=y CONFIG_HISILICON_IRQ_MBIGEN=y +CONFIG_MADERA_IRQ=m CONFIG_MVEBU_GICP=y CONFIG_MVEBU_ICU=y CONFIG_MVEBU_ODMI=y @@ -7326,6 +7448,7 @@ CONFIG_PARTITION_PERCPU=y CONFIG_QCOM_IRQ_COMBINER=y CONFIG_MESON_IRQ_GPIO=y # CONFIG_QCOM_PDC is not set +CONFIG_IMX_IRQSTEER=y # CONFIG_IPACK_BUS is not set CONFIG_ARCH_HAS_RESET_CONTROLLER=y CONFIG_RESET_CONTROLLER=y @@ -7353,6 +7476,8 @@ CONFIG_PHY_MESON_GXL_USB2=y CONFIG_PHY_MESON_GXL_USB3=y # CONFIG_BCM_KONA_USB2_PHY is not set # CONFIG_PHY_CADENCE_DP is not set +# CONFIG_PHY_CADENCE_SIERRA is not set +CONFIG_PHY_FSL_IMX8MQ_USB=m CONFIG_PHY_HI6220_USB=m # CONFIG_PHY_HISTB_COMBPHY is not set # CONFIG_PHY_HISI_INNO_USB2 is not set @@ -7394,6 +7519,7 @@ CONFIG_ARM_PMU_ACPI=y # CONFIG_HISI_PMU is not set # CONFIG_QCOM_L2_PMU is not set # CONFIG_QCOM_L3_PMU is not set +CONFIG_THUNDERX2_PMU=m # CONFIG_XGENE_PMU is not set # CONFIG_ARM_SPE_PMU is not set CONFIG_RAS=y @@ -7413,6 +7539,7 @@ CONFIG_DAX_DRIVER=y CONFIG_DAX=y CONFIG_DEV_DAX=m CONFIG_NVMEM=y +CONFIG_NVMEM_IMX_IIM=m CONFIG_QCOM_QFPROM=m # CONFIG_ROCKCHIP_EFUSE is not set CONFIG_NVMEM_SUNXI_SID=m @@ -7920,6 +8047,8 @@ CONFIG_CRYPTO_OFB=m CONFIG_CRYPTO_PCBC=m CONFIG_CRYPTO_XTS=m # CONFIG_CRYPTO_KEYWRAP is not set +CONFIG_CRYPTO_NHPOLY1305=m +CONFIG_CRYPTO_ADIANTUM=m # # Hash modes @@ -7949,6 +8078,7 @@ CONFIG_CRYPTO_SHA256=y CONFIG_CRYPTO_SHA512=m CONFIG_CRYPTO_SHA3=m # CONFIG_CRYPTO_SM3 is not set +CONFIG_CRYPTO_STREEBOG=m CONFIG_CRYPTO_TGR192=m CONFIG_CRYPTO_WP512=m @@ -8002,10 +8132,26 @@ CONFIG_CRYPTO_USER_API_HASH=m CONFIG_CRYPTO_USER_API_SKCIPHER=m CONFIG_CRYPTO_USER_API_RNG=m CONFIG_CRYPTO_USER_API_AEAD=m +# CONFIG_CRYPTO_STATS is not set CONFIG_CRYPTO_HASH_INFO=y CONFIG_CRYPTO_HW=y CONFIG_CRYPTO_DEV_MARVELL_CESA=m +CONFIG_CRYPTO_DEV_FSL_CAAM_COMMON=m +CONFIG_CRYPTO_DEV_FSL_CAAM=m +# CONFIG_CRYPTO_DEV_FSL_CAAM_DEBUG is not set +CONFIG_CRYPTO_DEV_FSL_CAAM_JR=m +CONFIG_CRYPTO_DEV_FSL_CAAM_RINGSIZE=9 +# CONFIG_CRYPTO_DEV_FSL_CAAM_INTC is not set +CONFIG_CRYPTO_DEV_FSL_CAAM_CRYPTO_API=m +CONFIG_CRYPTO_DEV_FSL_CAAM_AHASH_API=m +CONFIG_CRYPTO_DEV_FSL_CAAM_PKC_API=m +CONFIG_CRYPTO_DEV_FSL_CAAM_RNG_API=m +CONFIG_CRYPTO_DEV_FSL_CAAM_CRYPTO_API_DESC=m +CONFIG_CRYPTO_DEV_FSL_CAAM_AHASH_API_DESC=m +CONFIG_CRYPTO_DEV_SAHARA=m +CONFIG_CRYPTO_DEV_MXC_SCC=m # CONFIG_CRYPTO_DEV_CCP is not set +# CONFIG_CRYPTO_DEV_MXS_DCP is not set CONFIG_CRYPTO_DEV_CPT=m CONFIG_CAVIUM_CPT=m CONFIG_CRYPTO_DEV_NITROX=m @@ -8042,6 +8188,7 @@ CONFIG_BINARY_PRINTF=y # Library routines # CONFIG_RAID6_PQ=m +CONFIG_RAID6_PQ_BENCHMARK=y CONFIG_BITREVERSE=y CONFIG_HAVE_ARCH_BITREVERSE=y CONFIG_RATIONAL=y @@ -8049,6 +8196,7 @@ CONFIG_GENERIC_STRNCPY_FROM_USER=y CONFIG_GENERIC_STRNLEN_USER=y CONFIG_GENERIC_NET_UTILS=y CONFIG_GENERIC_PCI_IOMAP=y +CONFIG_STMP_DEVICE=y CONFIG_ARCH_USE_CMPXCHG_LOCKREF=y CONFIG_ARCH_HAS_FAST_MULTIPLIER=y # CONFIG_INDIRECT_PIO is not set @@ -8067,7 +8215,7 @@ CONFIG_CRC64=m CONFIG_CRC7=m CONFIG_LIBCRC32C=m CONFIG_CRC8=m -CONFIG_XXHASH=m +CONFIG_XXHASH=y CONFIG_AUDIT_GENERIC=y CONFIG_AUDIT_ARCH_COMPAT_GENERIC=y CONFIG_AUDIT_COMPAT_GENERIC=y @@ -8118,9 +8266,10 @@ CONFIG_ARCH_HAS_SYNC_DMA_FOR_DEVICE=y CONFIG_ARCH_HAS_SYNC_DMA_FOR_CPU=y CONFIG_ARCH_HAS_DMA_COHERENT_TO_PFN=y CONFIG_ARCH_HAS_DMA_MMAP_PGPROT=y -CONFIG_DMA_DIRECT_OPS=y CONFIG_DMA_VIRT_OPS=y CONFIG_SWIOTLB=y +CONFIG_DMA_REMAP=y +CONFIG_DMA_DIRECT_REMAP=y CONFIG_SGL_ALLOC=y CONFIG_CHECK_SIGNATURE=y CONFIG_CPU_RMAP=y @@ -8144,7 +8293,6 @@ CONFIG_FONT_8x8=y CONFIG_FONT_8x16=y CONFIG_SG_SPLIT=y CONFIG_SG_POOL=y -CONFIG_ARCH_HAS_SG_CHAIN=y CONFIG_ARCH_HAS_PMEM_API=y CONFIG_ARCH_HAS_UACCESS_FLUSHCACHE=y CONFIG_SBITMAP=y @@ -8212,7 +8360,10 @@ CONFIG_ARCH_HAS_DEBUG_VIRTUAL=y CONFIG_DEBUG_MEMORY_INIT=y # CONFIG_DEBUG_PER_CPU_MAPS is not set CONFIG_HAVE_ARCH_KASAN=y +CONFIG_HAVE_ARCH_KASAN_SW_TAGS=y +CONFIG_CC_HAS_KASAN_GENERIC=y # CONFIG_KASAN is not set +CONFIG_KASAN_STACK=1 CONFIG_ARCH_HAS_KCOV=y CONFIG_CC_HAS_SANCOV_TRACE_PC=y # CONFIG_KCOV is not set @@ -8315,6 +8466,7 @@ CONFIG_BLK_DEV_IO_TRACE=y CONFIG_KPROBE_EVENTS=y CONFIG_UPROBE_EVENTS=y CONFIG_BPF_EVENTS=y +CONFIG_DYNAMIC_EVENTS=y CONFIG_PROBE_EVENTS=y CONFIG_DYNAMIC_FTRACE=y # CONFIG_FUNCTION_PROFILER is not set diff --git a/gnu/packages/aux-files/linux-libre/4.20-i686.conf b/gnu/packages/aux-files/linux-libre/5.0-i686.conf similarity index 99% rename from gnu/packages/aux-files/linux-libre/4.20-i686.conf rename to gnu/packages/aux-files/linux-libre/5.0-i686.conf index c3ed028442..97e8f2a5e9 100644 --- a/gnu/packages/aux-files/linux-libre/4.20-i686.conf +++ b/gnu/packages/aux-files/linux-libre/5.0-i686.conf @@ -1,6 +1,6 @@ # # Automatically generated file; DO NOT EDIT. -# Linux/x86 4.20.0-gnu Kernel Configuration +# Linux/x86 5.0.0-gnu Kernel Configuration # # @@ -9,6 +9,7 @@ CONFIG_CC_IS_GCC=y CONFIG_GCC_VERSION=70400 CONFIG_CLANG_VERSION=0 +CONFIG_CC_HAS_ASM_GOTO=y CONFIG_IRQ_WORK=y CONFIG_BUILDTIME_EXTABLE_SORT=y CONFIG_THREAD_INFO_IN_TASK=y @@ -44,8 +45,6 @@ CONFIG_USELIB=y CONFIG_AUDIT=y CONFIG_HAVE_ARCH_AUDITSYSCALL=y CONFIG_AUDITSYSCALL=y -CONFIG_AUDIT_WATCH=y -CONFIG_AUDIT_TREE=y # # IRQ subsystem @@ -272,7 +271,7 @@ CONFIG_X86_FEATURE_NAMES=y CONFIG_X86_MPPARSE=y # CONFIG_GOLDFISH is not set CONFIG_RETPOLINE=y -# CONFIG_INTEL_RDT is not set +# CONFIG_X86_CPU_RESCTRL is not set # CONFIG_X86_BIGSMP is not set CONFIG_X86_EXTENDED_PLATFORM=y # CONFIG_X86_GOLDFISH is not set @@ -302,6 +301,7 @@ CONFIG_XEN_SAVE_RESTORE=y # CONFIG_XEN_DEBUG_FS is not set CONFIG_XEN_PVH=y CONFIG_KVM_GUEST=y +CONFIG_PVH=y CONFIG_KVM_DEBUG_FS=y # CONFIG_PARAVIRT_TIME_ACCOUNTING is not set CONFIG_PARAVIRT_CLOCK=y @@ -473,6 +473,7 @@ CONFIG_PM_TRACE=y CONFIG_PM_TRACE_RTC=y CONFIG_PM_CLK=y CONFIG_WQ_POWER_EFFICIENT_DEFAULT=y +# CONFIG_ENERGY_MODEL is not set CONFIG_ARCH_SUPPORTS_ACPI=y CONFIG_ACPI=y CONFIG_ACPI_LEGACY_TABLES_LOOKUP=y @@ -595,7 +596,6 @@ CONFIG_INTEL_IDLE=y # # Bus options (PCI etc.) # -CONFIG_PCI=y # CONFIG_PCI_GOBIOS is not set # CONFIG_PCI_GOMMCONFIG is not set # CONFIG_PCI_GODIRECT is not set @@ -604,121 +604,16 @@ CONFIG_PCI_BIOS=y CONFIG_PCI_DIRECT=y CONFIG_PCI_MMCONFIG=y CONFIG_PCI_XEN=y -CONFIG_PCI_DOMAINS=y # CONFIG_PCI_CNB20LE_QUIRK is not set -CONFIG_PCIEPORTBUS=y -CONFIG_HOTPLUG_PCI_PCIE=y -CONFIG_PCIEAER=y -# CONFIG_PCIEAER_INJECT is not set -# CONFIG_PCIE_ECRC is not set -CONFIG_PCIEASPM=y -CONFIG_PCIEASPM_DEBUG=y -CONFIG_PCIEASPM_DEFAULT=y -# CONFIG_PCIEASPM_POWERSAVE is not set -# CONFIG_PCIEASPM_POWER_SUPERSAVE is not set -# CONFIG_PCIEASPM_PERFORMANCE is not set -CONFIG_PCIE_PME=y -CONFIG_PCIE_DPC=y -CONFIG_PCIE_PTM=y -CONFIG_PCI_MSI=y -CONFIG_PCI_MSI_IRQ_DOMAIN=y -CONFIG_PCI_QUIRKS=y -# CONFIG_PCI_DEBUG is not set -CONFIG_PCI_REALLOC_ENABLE_AUTO=y -CONFIG_PCI_STUB=m -# CONFIG_PCI_PF_STUB is not set -CONFIG_XEN_PCIDEV_FRONTEND=m -CONFIG_PCI_ATS=y -CONFIG_PCI_LOCKLESS_CONFIG=y -CONFIG_PCI_IOV=y -CONFIG_PCI_PRI=y -CONFIG_PCI_PASID=y -CONFIG_PCI_LABEL=y -CONFIG_HOTPLUG_PCI=y -CONFIG_HOTPLUG_PCI_COMPAQ=m -CONFIG_HOTPLUG_PCI_COMPAQ_NVRAM=y -CONFIG_HOTPLUG_PCI_IBM=m -CONFIG_HOTPLUG_PCI_ACPI=y -CONFIG_HOTPLUG_PCI_ACPI_IBM=m -CONFIG_HOTPLUG_PCI_CPCI=y -CONFIG_HOTPLUG_PCI_CPCI_ZT5550=m -CONFIG_HOTPLUG_PCI_CPCI_GENERIC=m -CONFIG_HOTPLUG_PCI_SHPC=y - -# -# PCI controller drivers -# - -# -# Cadence PCIe controllers support -# - -# -# DesignWare PCI Core Support -# -# CONFIG_PCIE_DW_PLAT_HOST is not set - -# -# PCI Endpoint -# -# CONFIG_PCI_ENDPOINT is not set - -# -# PCI switch controller drivers -# -CONFIG_PCI_SW_SWITCHTEC=m # CONFIG_ISA_BUS is not set CONFIG_ISA_DMA_API=y CONFIG_ISA=y -CONFIG_EISA=y -CONFIG_EISA_VLB_PRIMING=y -CONFIG_EISA_PCI_EISA=y -CONFIG_EISA_VIRTUAL_ROOT=y -CONFIG_EISA_NAMES=y CONFIG_SCx200=m CONFIG_SCx200HR_TIMER=m CONFIG_ALIX=y CONFIG_NET5501=y CONFIG_GEOS=y CONFIG_AMD_NB=y -CONFIG_PCCARD=m -CONFIG_PCMCIA=m -CONFIG_PCMCIA_LOAD_CIS=y -CONFIG_CARDBUS=y - -# -# PC-card bridges -# -CONFIG_YENTA=m -CONFIG_YENTA_O2=y -CONFIG_YENTA_RICOH=y -CONFIG_YENTA_TI=y -CONFIG_YENTA_ENE_TUNE=y -CONFIG_YENTA_TOSHIBA=y -CONFIG_PD6729=m -CONFIG_I82092=m -CONFIG_I82365=m -CONFIG_TCIC=m -CONFIG_PCMCIA_PROBE=y -CONFIG_PCCARD_NONSTATIC=y -CONFIG_RAPIDIO=y -CONFIG_RAPIDIO_TSI721=m -CONFIG_RAPIDIO_DISC_TIMEOUT=30 -# CONFIG_RAPIDIO_ENABLE_RX_TX_PORTS is not set -CONFIG_RAPIDIO_DMA_ENGINE=y -# CONFIG_RAPIDIO_DEBUG is not set -CONFIG_RAPIDIO_ENUM_BASIC=m -CONFIG_RAPIDIO_CHMAN=m -CONFIG_RAPIDIO_MPORT_CDEV=m - -# -# RapidIO Switch drivers -# -CONFIG_RAPIDIO_TSI57X=m -CONFIG_RAPIDIO_CPS_XX=m -CONFIG_RAPIDIO_TSI568=m -CONFIG_RAPIDIO_CPS_GEN2=m -CONFIG_RAPIDIO_RXS_GEN3=m # CONFIG_X86_SYSFB is not set # @@ -851,6 +746,7 @@ CONFIG_STACKPROTECTOR=y CONFIG_STACKPROTECTOR_STRONG=y CONFIG_HAVE_ARCH_WITHIN_STACK_FRAMES=y CONFIG_HAVE_IRQ_TIME_ACCOUNTING=y +CONFIG_HAVE_MOVE_PMD=y CONFIG_HAVE_ARCH_TRANSPARENT_HUGEPAGE=y CONFIG_HAVE_ARCH_HUGE_VMAP=y CONFIG_HAVE_MOD_ARCH_SPECIFIC=y @@ -913,7 +809,6 @@ CONFIG_BLK_DEV_THROTTLING=y CONFIG_BLK_CMDLINE_PARSER=y CONFIG_BLK_WBT=y # CONFIG_BLK_CGROUP_IOLATENCY is not set -# CONFIG_BLK_WBT_SQ is not set CONFIG_BLK_WBT_MQ=y CONFIG_BLK_DEBUG_FS=y CONFIG_BLK_DEBUG_FS_ZONED=y @@ -951,14 +846,6 @@ CONFIG_BLK_PM=y # # IO Schedulers # -CONFIG_IOSCHED_NOOP=y -CONFIG_IOSCHED_DEADLINE=y -CONFIG_IOSCHED_CFQ=y -CONFIG_CFQ_GROUP_IOSCHED=y -CONFIG_DEFAULT_DEADLINE=y -# CONFIG_DEFAULT_CFQ is not set -# CONFIG_DEFAULT_NOOP is not set -CONFIG_DEFAULT_IOSCHED="deadline" CONFIG_MQ_IOSCHED_DEADLINE=m CONFIG_MQ_IOSCHED_KYBER=m CONFIG_IOSCHED_BFQ=m @@ -1047,6 +934,7 @@ CONFIG_ARCH_HAS_PTE_SPECIAL=y CONFIG_NET=y CONFIG_NET_INGRESS=y CONFIG_NET_EGRESS=y +CONFIG_SKB_EXTENSIONS=y # # Networking options @@ -1215,9 +1103,6 @@ CONFIG_NF_CT_NETLINK_HELPER=m CONFIG_NETFILTER_NETLINK_GLUE_CT=y CONFIG_NF_NAT=m CONFIG_NF_NAT_NEEDED=y -CONFIG_NF_NAT_PROTO_DCCP=y -CONFIG_NF_NAT_PROTO_UDPLITE=y -CONFIG_NF_NAT_PROTO_SCTP=y CONFIG_NF_NAT_AMANDA=m CONFIG_NF_NAT_FTP=m CONFIG_NF_NAT_IRC=m @@ -1423,7 +1308,6 @@ CONFIG_NF_REJECT_IPV4=m CONFIG_NF_NAT_IPV4=m CONFIG_NF_NAT_MASQUERADE_IPV4=y CONFIG_NF_NAT_SNMP_BASIC=m -CONFIG_NF_NAT_PROTO_GRE=m CONFIG_NF_NAT_PPTP=m CONFIG_NF_NAT_H323=m CONFIG_IP_NF_IPTABLES=m @@ -1566,6 +1450,7 @@ CONFIG_NET_DSA_TAG_DSA=y CONFIG_NET_DSA_TAG_EDSA=y CONFIG_NET_DSA_TAG_GSWIP=y CONFIG_NET_DSA_TAG_KSZ=y +CONFIG_NET_DSA_TAG_KSZ9477=y CONFIG_NET_DSA_TAG_LAN9303=y CONFIG_NET_DSA_TAG_MTK=y CONFIG_NET_DSA_TAG_TRAILER=y @@ -1996,6 +1881,115 @@ CONFIG_HAVE_EBPF_JIT=y # # Device Drivers # +CONFIG_HAVE_EISA=y +CONFIG_EISA=y +CONFIG_EISA_VLB_PRIMING=y +CONFIG_EISA_PCI_EISA=y +CONFIG_EISA_VIRTUAL_ROOT=y +CONFIG_EISA_NAMES=y +CONFIG_HAVE_PCI=y +CONFIG_PCI=y +CONFIG_PCI_DOMAINS=y +CONFIG_PCIEPORTBUS=y +CONFIG_HOTPLUG_PCI_PCIE=y +CONFIG_PCIEAER=y +# CONFIG_PCIEAER_INJECT is not set +# CONFIG_PCIE_ECRC is not set +CONFIG_PCIEASPM=y +CONFIG_PCIEASPM_DEBUG=y +CONFIG_PCIEASPM_DEFAULT=y +# CONFIG_PCIEASPM_POWERSAVE is not set +# CONFIG_PCIEASPM_POWER_SUPERSAVE is not set +# CONFIG_PCIEASPM_PERFORMANCE is not set +CONFIG_PCIE_PME=y +CONFIG_PCIE_DPC=y +CONFIG_PCIE_PTM=y +CONFIG_PCI_MSI=y +CONFIG_PCI_MSI_IRQ_DOMAIN=y +CONFIG_PCI_QUIRKS=y +# CONFIG_PCI_DEBUG is not set +CONFIG_PCI_REALLOC_ENABLE_AUTO=y +CONFIG_PCI_STUB=m +# CONFIG_PCI_PF_STUB is not set +CONFIG_XEN_PCIDEV_FRONTEND=m +CONFIG_PCI_ATS=y +CONFIG_PCI_LOCKLESS_CONFIG=y +CONFIG_PCI_IOV=y +CONFIG_PCI_PRI=y +CONFIG_PCI_PASID=y +CONFIG_PCI_LABEL=y +CONFIG_HOTPLUG_PCI=y +CONFIG_HOTPLUG_PCI_COMPAQ=m +CONFIG_HOTPLUG_PCI_COMPAQ_NVRAM=y +CONFIG_HOTPLUG_PCI_IBM=m +CONFIG_HOTPLUG_PCI_ACPI=y +CONFIG_HOTPLUG_PCI_ACPI_IBM=m +CONFIG_HOTPLUG_PCI_CPCI=y +CONFIG_HOTPLUG_PCI_CPCI_ZT5550=m +CONFIG_HOTPLUG_PCI_CPCI_GENERIC=m +CONFIG_HOTPLUG_PCI_SHPC=y + +# +# PCI controller drivers +# + +# +# Cadence PCIe controllers support +# + +# +# DesignWare PCI Core Support +# +# CONFIG_PCIE_DW_PLAT_HOST is not set +# CONFIG_PCI_MESON is not set + +# +# PCI Endpoint +# +# CONFIG_PCI_ENDPOINT is not set + +# +# PCI switch controller drivers +# +CONFIG_PCI_SW_SWITCHTEC=m +CONFIG_PCCARD=m +CONFIG_PCMCIA=m +CONFIG_PCMCIA_LOAD_CIS=y +CONFIG_CARDBUS=y + +# +# PC-card bridges +# +CONFIG_YENTA=m +CONFIG_YENTA_O2=y +CONFIG_YENTA_RICOH=y +CONFIG_YENTA_TI=y +CONFIG_YENTA_ENE_TUNE=y +CONFIG_YENTA_TOSHIBA=y +CONFIG_PD6729=m +CONFIG_I82092=m +CONFIG_I82365=m +CONFIG_TCIC=m +CONFIG_PCMCIA_PROBE=y +CONFIG_PCCARD_NONSTATIC=y +CONFIG_RAPIDIO=y +CONFIG_RAPIDIO_TSI721=m +CONFIG_RAPIDIO_DISC_TIMEOUT=30 +# CONFIG_RAPIDIO_ENABLE_RX_TX_PORTS is not set +CONFIG_RAPIDIO_DMA_ENGINE=y +# CONFIG_RAPIDIO_DEBUG is not set +CONFIG_RAPIDIO_ENUM_BASIC=m +CONFIG_RAPIDIO_CHMAN=m +CONFIG_RAPIDIO_MPORT_CDEV=m + +# +# RapidIO Switch drivers +# +CONFIG_RAPIDIO_TSI57X=m +CONFIG_RAPIDIO_CPS_XX=m +CONFIG_RAPIDIO_TSI568=m +CONFIG_RAPIDIO_CPS_GEN2=m +CONFIG_RAPIDIO_RXS_GEN3=m # # Generic Driver Options @@ -2046,16 +2040,16 @@ CONFIG_GNSS_SIRF_SERIAL=m CONFIG_GNSS_UBX_SERIAL=m CONFIG_MTD=m # CONFIG_MTD_TESTS is not set -CONFIG_MTD_REDBOOT_PARTS=m -CONFIG_MTD_REDBOOT_DIRECTORY_BLOCK=-1 -# CONFIG_MTD_REDBOOT_PARTS_UNALLOCATED is not set -# CONFIG_MTD_REDBOOT_PARTS_READONLY is not set CONFIG_MTD_CMDLINE_PARTS=m CONFIG_MTD_AR7_PARTS=m # # Partition parsers # +CONFIG_MTD_REDBOOT_PARTS=m +CONFIG_MTD_REDBOOT_DIRECTORY_BLOCK=-1 +# CONFIG_MTD_REDBOOT_PARTS_UNALLOCATED is not set +# CONFIG_MTD_REDBOOT_PARTS_READONLY is not set # # User Modules And Translation Layers @@ -2100,6 +2094,7 @@ CONFIG_MTD_ABSENT=m CONFIG_MTD_COMPLEX_MAPPINGS=y CONFIG_MTD_PHYSMAP=m # CONFIG_MTD_PHYSMAP_COMPAT is not set +# CONFIG_MTD_PHYSMAP_GPIO_ADDR is not set CONFIG_MTD_SBC_GXX=m CONFIG_MTD_SCx200_DOCFLASH=m CONFIG_MTD_AMD76XROM=m @@ -2112,10 +2107,8 @@ CONFIG_MTD_L440GX=m CONFIG_MTD_PCI=m CONFIG_MTD_PCMCIA=m # CONFIG_MTD_PCMCIA_ANONYMOUS is not set -CONFIG_MTD_GPIO_ADDR=m CONFIG_MTD_INTEL_VR_NOR=m CONFIG_MTD_PLATRAM=m -CONFIG_MTD_LATCH_ADDR=m # # Self-contained MTD device drivers @@ -2275,11 +2268,13 @@ CONFIG_BLK_DEV_NVME=y CONFIG_NVME_FABRICS=m CONFIG_NVME_RDMA=m CONFIG_NVME_FC=m +CONFIG_NVME_TCP=m CONFIG_NVME_TARGET=m CONFIG_NVME_TARGET_LOOP=m CONFIG_NVME_TARGET_RDMA=m CONFIG_NVME_TARGET_FC=m CONFIG_NVME_TARGET_FCLOOP=m +CONFIG_NVME_TARGET_TCP=m # # Misc devices @@ -2314,6 +2309,7 @@ CONFIG_LATTICE_ECP3_CONFIG=m CONFIG_SRAM=y # CONFIG_PCI_ENDPOINT_TEST is not set CONFIG_MISC_RTSX=m +CONFIG_PVPANIC=m CONFIG_C2PORT=m CONFIG_C2PORT_DURAMAR_2150=m @@ -2380,6 +2376,7 @@ CONFIG_VMWARE_VMCI=m # CONFIG_VHOST_RING=m CONFIG_ECHO=m +CONFIG_MISC_ALCOR_PCI=m CONFIG_MISC_RTSX_PCI=m CONFIG_MISC_RTSX_USB=m CONFIG_HAVE_IDE=y @@ -2393,7 +2390,6 @@ CONFIG_RAID_ATTRS=m CONFIG_SCSI=y CONFIG_SCSI_DMA=y CONFIG_SCSI_NETLINK=y -# CONFIG_SCSI_MQ_DEFAULT is not set CONFIG_SCSI_PROC_FS=y # @@ -2475,6 +2471,7 @@ CONFIG_SCSI_UFSHCD=m CONFIG_SCSI_UFSHCD_PCI=m # CONFIG_SCSI_UFS_DWC_TC_PCI is not set CONFIG_SCSI_UFSHCD_PLATFORM=m +CONFIG_SCSI_UFS_CDNS_PLATFORM=m # CONFIG_SCSI_UFS_DWC_TC_PLATFORM is not set # CONFIG_SCSI_UFS_BSG is not set CONFIG_SCSI_HPTIOP=m @@ -2830,8 +2827,9 @@ CONFIG_NET_DSA_BCM_SF2=m CONFIG_NET_DSA_LANTIQ_GSWIP=m CONFIG_NET_DSA_MT7530=m CONFIG_NET_DSA_MV88E6060=m -CONFIG_MICROCHIP_KSZ=m -CONFIG_MICROCHIP_KSZ_SPI_DRIVER=m +CONFIG_NET_DSA_MICROCHIP_KSZ_COMMON=m +CONFIG_NET_DSA_MICROCHIP_KSZ9477=m +CONFIG_NET_DSA_MICROCHIP_KSZ9477_SPI=m CONFIG_NET_DSA_MV88E6XXX=m CONFIG_NET_DSA_MV88E6XXX_GLOBAL2=y # CONFIG_NET_DSA_MV88E6XXX_PTP is not set @@ -3261,6 +3259,7 @@ CONFIG_USB_IPHETH=m CONFIG_USB_SIERRA_NET=m CONFIG_USB_VL600=m CONFIG_USB_NET_CH9200=m +CONFIG_USB_NET_AQC111=m CONFIG_WLAN=y # CONFIG_WIRELESS_WDS is not set CONFIG_WLAN_VENDOR_ADMTEK=y @@ -3522,11 +3521,12 @@ CONFIG_ZD1211RW=m # CONFIG_ZD1211RW_DEBUG is not set CONFIG_WLAN_VENDOR_QUANTENNA=y CONFIG_QTNFMAC=m -CONFIG_QTNFMAC_PEARL_PCIE=m +CONFIG_QTNFMAC_PCIE=m CONFIG_PCMCIA_RAYCS=m CONFIG_PCMCIA_WL3501=m CONFIG_MAC80211_HWSIM=m CONFIG_USB_NET_RNDIS_WLAN=m +CONFIG_VIRT_WIFI=m # # WiMAX Wireless Broadband devices @@ -3686,13 +3686,6 @@ CONFIG_ISDN_DRV_AVMB1_B1PCMCIA=m CONFIG_ISDN_DRV_AVMB1_AVM_CS=m CONFIG_ISDN_DRV_AVMB1_T1PCI=m CONFIG_ISDN_DRV_AVMB1_C4=m -CONFIG_CAPI_EICON=y -CONFIG_ISDN_DIVAS=m -CONFIG_ISDN_DIVAS_BRIPCI=y -CONFIG_ISDN_DIVAS_PRIPCI=y -CONFIG_ISDN_DIVAS_DIVACAPI=m -CONFIG_ISDN_DIVAS_USERIDI=m -CONFIG_ISDN_DIVAS_MAINT=m CONFIG_ISDN_DRV_GIGASET=m # CONFIG_GIGASET_CAPI is not set CONFIG_GIGASET_I4L=y @@ -4040,6 +4033,7 @@ CONFIG_SERIO_RAW=m CONFIG_SERIO_ALTERA_PS2=m CONFIG_SERIO_PS2MULT=m CONFIG_SERIO_ARC_PS2=m +CONFIG_SERIO_OLPC_APSP=m CONFIG_HYPERV_KEYBOARD=m CONFIG_SERIO_GPIO_PS2=m CONFIG_USERIO=m @@ -4146,6 +4140,7 @@ CONFIG_SERIAL_MEN_Z135=m CONFIG_SERIAL_DEV_BUS=y CONFIG_SERIAL_DEV_CTRL_TTYPORT=y CONFIG_TTY_PRINTK=y +CONFIG_TTY_PRINTK_LEVEL=6 CONFIG_PRINTER=m # CONFIG_LP_CONSOLE is not set CONFIG_PPDEV=m @@ -4315,6 +4310,9 @@ CONFIG_I2C_SLAVE_EEPROM=m # CONFIG_I2C_DEBUG_CORE is not set # CONFIG_I2C_DEBUG_ALGO is not set # CONFIG_I2C_DEBUG_BUS is not set +CONFIG_I3C=m +CONFIG_CDNS_I3C_MASTER=m +CONFIG_DW_I3C_MASTER=m CONFIG_SPI=y # CONFIG_SPI_DEBUG is not set CONFIG_SPI_MASTER=y @@ -4340,6 +4338,7 @@ CONFIG_SPI_PXA2XX=m CONFIG_SPI_PXA2XX_PCI=m CONFIG_SPI_ROCKCHIP=m CONFIG_SPI_SC18IS602=m +CONFIG_SPI_MXIC=m CONFIG_SPI_TOPCLIFF_PCH=m CONFIG_SPI_XCOMM=m # CONFIG_SPI_XILINX is not set @@ -4713,6 +4712,7 @@ CONFIG_SENSORS_NCT6775=m CONFIG_SENSORS_NCT7802=m CONFIG_SENSORS_NCT7904=m CONFIG_SENSORS_NPCM7XX=m +# CONFIG_SENSORS_OCC_P8_I2C is not set CONFIG_SENSORS_PCF8591=m CONFIG_PMBUS=m CONFIG_SENSORS_PMBUS=m @@ -4806,6 +4806,10 @@ CONFIG_THERMAL_GOV_POWER_ALLOCATOR=y CONFIG_CLOCK_THERMAL=y CONFIG_DEVFREQ_THERMAL=y CONFIG_THERMAL_EMULATION=y + +# +# Intel thermal drivers +# CONFIG_INTEL_POWERCLAMP=m CONFIG_X86_PKG_TEMP_THERMAL=m CONFIG_INTEL_SOC_DTS_IOSF_CORE=m @@ -4880,6 +4884,7 @@ CONFIG_SBC7240_WDT=m CONFIG_CPU5_WDT=m CONFIG_SMSC_SCH311X_WDT=m CONFIG_SMSC37B787_WDT=m +CONFIG_TQMX86_WDT=m CONFIG_VIA_WDT=m CONFIG_W83627HF_WDT=m CONFIG_W83877F_WDT=m @@ -4948,7 +4953,6 @@ CONFIG_MFD_CS5535=m CONFIG_MFD_AS3711=y CONFIG_PMIC_ADP5520=y CONFIG_MFD_AAT2870_CORE=y -CONFIG_MFD_AT91_USART=m CONFIG_MFD_BCM590XX=m CONFIG_MFD_BD9571MWV=m CONFIG_MFD_AXP20X=m @@ -5183,6 +5187,7 @@ CONFIG_RC_LOOPBACK=m CONFIG_IR_SERIAL=m CONFIG_IR_SERIAL_TRANSMITTER=y CONFIG_IR_SIR=m +CONFIG_RC_XBOX_DVD=m CONFIG_MEDIA_SUPPORT=m # @@ -5203,7 +5208,6 @@ CONFIG_VIDEO_V4L2_SUBDEV_API=y CONFIG_VIDEO_V4L2=m # CONFIG_VIDEO_ADV_DEBUG is not set # CONFIG_VIDEO_FIXED_MINOR_RANGES is not set -# CONFIG_VIDEO_PCI_SKELETON is not set CONFIG_VIDEO_TUNER=m CONFIG_V4L2_MEM2MEM_DEV=m CONFIG_V4L2_FLASH_LED_CLASS=m @@ -5472,6 +5476,7 @@ CONFIG_VIDEO_VIA_CAMERA=m CONFIG_VIDEO_CADENCE=y CONFIG_VIDEO_CADENCE_CSI2RX=m CONFIG_VIDEO_CADENCE_CSI2TX=m +CONFIG_VIDEO_ASPEED=m CONFIG_SOC_CAMERA=m CONFIG_SOC_CAMERA_PLATFORM=m CONFIG_V4L_MEM2MEM_DRIVERS=y @@ -5487,6 +5492,8 @@ CONFIG_VIDEO_VICODEC=m CONFIG_DVB_PLATFORM_DRIVERS=y CONFIG_CEC_PLATFORM_DRIVERS=y CONFIG_VIDEO_CROS_EC_CEC=m +CONFIG_VIDEO_SECO_CEC=m +# CONFIG_VIDEO_SECO_RC is not set CONFIG_SDR_PLATFORM_DRIVERS=y # @@ -6024,7 +6031,7 @@ CONFIG_FB_SYS_FOPS=m CONFIG_FB_DEFERRED_IO=y CONFIG_FB_HECUBA=m CONFIG_FB_SVGALIB=m -CONFIG_FB_BACKLIGHT=y +CONFIG_FB_BACKLIGHT=m CONFIG_FB_MODE_HELPERS=y CONFIG_FB_TILEBLITTING=y @@ -6425,6 +6432,7 @@ CONFIG_SND_SOC_ACPI=m CONFIG_SND_SOC_AMD_ACP=m CONFIG_SND_SOC_AMD_CZ_DA7219MX98357_MACH=m CONFIG_SND_SOC_AMD_CZ_RT5645_MACH=m +CONFIG_SND_SOC_AMD_ACP3x=m CONFIG_SND_ATMEL_SOC=m CONFIG_SND_DESIGNWARE_I2S=m # CONFIG_SND_DESIGNWARE_PCM is not set @@ -6456,6 +6464,13 @@ CONFIG_SND_SST_ATOM_HIFI2_PLATFORM=m CONFIG_SND_SST_ATOM_HIFI2_PLATFORM_PCI=m CONFIG_SND_SST_ATOM_HIFI2_PLATFORM_ACPI=m CONFIG_SND_SOC_INTEL_SKYLAKE=m +CONFIG_SND_SOC_INTEL_SKL=m +CONFIG_SND_SOC_INTEL_APL=m +CONFIG_SND_SOC_INTEL_KBL=m +CONFIG_SND_SOC_INTEL_GLK=m +CONFIG_SND_SOC_INTEL_CNL=m +CONFIG_SND_SOC_INTEL_CFL=m +CONFIG_SND_SOC_INTEL_SKYLAKE_FAMILY=m CONFIG_SND_SOC_INTEL_SKYLAKE_SSP_CLK=m CONFIG_SND_SOC_INTEL_SKYLAKE_HDAUDIO_CODEC=y CONFIG_SND_SOC_INTEL_SKYLAKE_COMMON=m @@ -6482,12 +6497,14 @@ CONFIG_SND_SOC_INTEL_KBL_RT5663_MAX98927_MACH=m CONFIG_SND_SOC_INTEL_KBL_RT5663_RT5514_MAX98927_MACH=m CONFIG_SND_SOC_INTEL_KBL_DA7219_MAX98357A_MACH=m CONFIG_SND_SOC_INTEL_KBL_DA7219_MAX98927_MACH=m +CONFIG_SND_SOC_INTEL_KBL_RT5660_MACH=m CONFIG_SND_SOC_INTEL_GLK_RT5682_MAX98357A_MACH=m CONFIG_SND_SOC_INTEL_SKL_HDA_DSP_GENERIC_MACH=m # # STMicroelectronics STM32 SOC audio support # +CONFIG_SND_SOC_XILINX_I2S=m CONFIG_SND_SOC_XTFPGA_I2S=m CONFIG_ZX_TDM=m CONFIG_SND_SOC_I2C_AND_SPI=m @@ -6504,6 +6521,7 @@ CONFIG_SND_SOC_ADAU1761_I2C=m CONFIG_SND_SOC_ADAU1761_SPI=m CONFIG_SND_SOC_ADAU7002=m CONFIG_SND_SOC_AK4104=m +CONFIG_SND_SOC_AK4118=m CONFIG_SND_SOC_AK4458=m CONFIG_SND_SOC_AK4554=m CONFIG_SND_SOC_AK4613=m @@ -6586,6 +6604,7 @@ CONFIG_SND_SOC_RT5631=m CONFIG_SND_SOC_RT5640=m CONFIG_SND_SOC_RT5645=m CONFIG_SND_SOC_RT5651=m +CONFIG_SND_SOC_RT5660=m CONFIG_SND_SOC_RT5663=m CONFIG_SND_SOC_RT5670=m CONFIG_SND_SOC_RT5677=m @@ -7170,10 +7189,10 @@ CONFIG_TYPEC_MUX_PI3USB30532=m # USB Type-C Alternate Mode drivers # CONFIG_TYPEC_DP_ALTMODE=m +CONFIG_USB_ROLE_SWITCH=m CONFIG_USB_ROLES_INTEL_XHCI=m CONFIG_USB_LED_TRIG=y CONFIG_USB_ULPI_BUS=m -CONFIG_USB_ROLE_SWITCH=m CONFIG_UWB=m CONFIG_UWB_HWA=m CONFIG_UWB_WHCI=m @@ -7195,6 +7214,7 @@ CONFIG_MMC_SDHCI_ACPI=m CONFIG_MMC_SDHCI_PLTFM=m CONFIG_MMC_SDHCI_F_SDH30=m CONFIG_MMC_WBSD=m +CONFIG_MMC_ALCOR=m CONFIG_MMC_TIFM_SD=m CONFIG_MMC_SPI=m CONFIG_MMC_SDRICOH_CS=m @@ -7311,6 +7331,7 @@ CONFIG_LEDS_TRIGGER_CAMERA=m CONFIG_LEDS_TRIGGER_PANIC=y CONFIG_LEDS_TRIGGER_NETDEV=m CONFIG_LEDS_TRIGGER_PATTERN=m +CONFIG_LEDS_TRIGGER_AUDIO=m # CONFIG_ACCESSIBILITY is not set CONFIG_INFINIBAND=m CONFIG_INFINIBAND_USER_MAD=m @@ -7620,6 +7641,7 @@ CONFIG_XEN_AUTO_XLATE=y CONFIG_XEN_ACPI=y CONFIG_XEN_SYMS=y CONFIG_XEN_HAVE_VPMU=y +CONFIG_XEN_FRONT_PGDIR_SHBUF=m CONFIG_STAGING=y CONFIG_PRISM2_USB=m CONFIG_COMEDI=m @@ -7833,7 +7855,6 @@ CONFIG_ADE7854_SPI=m # # Resolver to digital converters # -CONFIG_AD2S90=m CONFIG_AD2S1210=m CONFIG_FB_SM750=m CONFIG_FB_XGI=m @@ -7869,6 +7890,7 @@ CONFIG_VIDEO_ZORAN_DC10=m CONFIG_VIDEO_ZORAN_LML33=m CONFIG_VIDEO_ZORAN_LML33R10=m CONFIG_VIDEO_ZORAN_AVS6EYES=m +# CONFIG_VIDEO_IPU3_IMGU is not set # # Android @@ -7877,8 +7899,6 @@ CONFIG_LTE_GDM724X=m CONFIG_FIREWIRE_SERIAL=m CONFIG_FWTTY_MAX_TOTAL_PORTS=64 CONFIG_FWTTY_MAX_CARD_PORTS=32 -CONFIG_MTD_SPINAND_MT29F=m -CONFIG_MTD_SPINAND_ONDIEECC=y CONFIG_GS_FPGABOOT=m # CONFIG_UNISYSSPAR is not set CONFIG_FB_TFT=m @@ -8024,7 +8044,6 @@ CONFIG_SAMSUNG_Q10=m CONFIG_APPLE_GMUX=m CONFIG_INTEL_RST=m CONFIG_INTEL_SMARTCONNECT=m -CONFIG_PVPANIC=m CONFIG_INTEL_PMC_IPC=m CONFIG_INTEL_BXTWC_PMIC_TMU=m CONFIG_SURFACE_PRO3_BUTTON=m @@ -8035,6 +8054,7 @@ CONFIG_INTEL_PUNIT_IPC=m CONFIG_INTEL_CHTDC_TI_PWRBTN=m CONFIG_I2C_MULTI_INSTANTIATE=m CONFIG_INTEL_ATOMISP2_PM=m +# CONFIG_HUAWEI_WMI is not set CONFIG_PMC_ATOM=y CONFIG_CHROME_PLATFORMS=y CONFIG_CHROMEOS_LAPTOP=m @@ -8232,6 +8252,7 @@ CONFIG_STK8BA50=m # Analog to digital converters # CONFIG_AD_SIGMA_DELTA=m +CONFIG_AD7124=m CONFIG_AD7266=m CONFIG_AD7291=m CONFIG_AD7298=m @@ -8241,6 +8262,7 @@ CONFIG_AD7791=m CONFIG_AD7793=m CONFIG_AD7887=m CONFIG_AD7923=m +CONFIG_AD7949=m CONFIG_AD799X=m CONFIG_AXP20X_ADC=m CONFIG_AXP288_ADC=m @@ -8359,6 +8381,7 @@ CONFIG_MCP4725=m CONFIG_MCP4922=m CONFIG_TI_DAC082S085=m CONFIG_TI_DAC5571=m +CONFIG_TI_DAC7311=m # # IIO dummy driver @@ -8487,6 +8510,7 @@ CONFIG_TSL2772=m CONFIG_TSL4531=m CONFIG_US5182D=m CONFIG_VCNL4000=m +CONFIG_VCNL4035=m CONFIG_VEML6070=m CONFIG_VL6180=m CONFIG_ZOPT2201=m @@ -8508,6 +8532,9 @@ CONFIG_IIO_ST_MAGN_SPI_3AXIS=m CONFIG_SENSORS_HMC5843=m CONFIG_SENSORS_HMC5843_I2C=m CONFIG_SENSORS_HMC5843_SPI=m +CONFIG_SENSORS_RM3100=m +CONFIG_SENSORS_RM3100_I2C=m +CONFIG_SENSORS_RM3100_SPI=m # # Multiplexers @@ -8537,6 +8564,7 @@ CONFIG_MAX5487=m CONFIG_MCP4018=m CONFIG_MCP4131=m CONFIG_MCP4531=m +CONFIG_MCP41010=m CONFIG_TPL0102=m # @@ -8590,6 +8618,7 @@ CONFIG_VL53L0X_I2C=m # # Resolver to digital converters # +CONFIG_AD2S90=m CONFIG_AD2S1200=m # @@ -8644,6 +8673,7 @@ CONFIG_PWM_TWL_LED=m # IRQ chip support # CONFIG_ARM_GIC_MAX_NR=1 +CONFIG_MADERA_IRQ=m CONFIG_IPACK_BUS=m CONFIG_BOARD_TPCI200=m CONFIG_SERIAL_IPOCTAL=m @@ -8690,6 +8720,7 @@ CONFIG_ND_BLK=m CONFIG_ND_CLAIM=y CONFIG_ND_BTT=m CONFIG_BTT=y +CONFIG_NVDIMM_KEYS=y CONFIG_DAX_DRIVER=y CONFIG_DAX=y CONFIG_DEV_DAX=m @@ -9156,6 +9187,7 @@ CONFIG_IMA_DEFAULT_HASH="sha1" # CONFIG_IMA_WRITE_POLICY is not set # CONFIG_IMA_READ_POLICY is not set CONFIG_IMA_APPRAISE=y +# CONFIG_IMA_ARCH_POLICY is not set # CONFIG_IMA_APPRAISE_BUILD_POLICY is not set CONFIG_IMA_APPRAISE_BOOTPARAM=y CONFIG_IMA_TRUSTED_KEYRING=y @@ -9245,6 +9277,8 @@ CONFIG_CRYPTO_OFB=m CONFIG_CRYPTO_PCBC=m CONFIG_CRYPTO_XTS=m CONFIG_CRYPTO_KEYWRAP=m +CONFIG_CRYPTO_NHPOLY1305=m +CONFIG_CRYPTO_ADIANTUM=m # # Hash modes @@ -9276,6 +9310,7 @@ CONFIG_CRYPTO_SHA256=y CONFIG_CRYPTO_SHA512=m CONFIG_CRYPTO_SHA3=m CONFIG_CRYPTO_SM3=m +CONFIG_CRYPTO_STREEBOG=m CONFIG_CRYPTO_TGR192=m CONFIG_CRYPTO_WP512=m @@ -9333,6 +9368,7 @@ CONFIG_CRYPTO_USER_API_HASH=m CONFIG_CRYPTO_USER_API_SKCIPHER=m CONFIG_CRYPTO_USER_API_RNG=m CONFIG_CRYPTO_USER_API_AEAD=m +# CONFIG_CRYPTO_STATS is not set CONFIG_CRYPTO_HASH_INFO=y CONFIG_CRYPTO_HW=y CONFIG_CRYPTO_DEV_PADLOCK=y @@ -9378,6 +9414,7 @@ CONFIG_BINARY_PRINTF=y # Library routines # CONFIG_RAID6_PQ=m +CONFIG_RAID6_PQ_BENCHMARK=y CONFIG_BITREVERSE=y CONFIG_RATIONAL=y CONFIG_GENERIC_STRNCPY_FROM_USER=y @@ -9402,7 +9439,7 @@ CONFIG_CRC64=m CONFIG_CRC7=m CONFIG_LIBCRC32C=m CONFIG_CRC8=m -CONFIG_XXHASH=m +CONFIG_XXHASH=y CONFIG_AUDIT_GENERIC=y # CONFIG_RANDOM32_SELFTEST is not set CONFIG_842_COMPRESS=m @@ -9453,7 +9490,6 @@ CONFIG_NEED_SG_DMA_LENGTH=y CONFIG_NEED_DMA_MAP_STATE=y CONFIG_ARCH_DMA_ADDR_T_64BIT=y CONFIG_HAVE_GENERIC_DMA_COHERENT=y -CONFIG_DMA_DIRECT_OPS=y CONFIG_DMA_VIRT_OPS=y CONFIG_SWIOTLB=y CONFIG_SGL_ALLOC=y @@ -9477,10 +9513,10 @@ CONFIG_FONT_SUPPORT=y CONFIG_FONT_8x8=y CONFIG_FONT_8x16=y CONFIG_SG_POOL=y -CONFIG_ARCH_HAS_SG_CHAIN=y CONFIG_SBITMAP=y CONFIG_PARMAN=m # CONFIG_STRING_SELFTEST is not set +CONFIG_OBJAGG=m # # Kernel hacking @@ -9540,6 +9576,8 @@ CONFIG_MEMORY_NOTIFIER_ERROR_INJECT=m # CONFIG_DEBUG_HIGHMEM is not set CONFIG_HAVE_DEBUG_STACKOVERFLOW=y # CONFIG_DEBUG_STACKOVERFLOW is not set +CONFIG_CC_HAS_KASAN_GENERIC=y +CONFIG_KASAN_STACK=1 CONFIG_CC_HAS_SANCOV_TRACE_PC=y # CONFIG_DEBUG_SHIRQ is not set @@ -9649,6 +9687,7 @@ CONFIG_KPROBE_EVENTS=y # CONFIG_KPROBE_EVENTS_ON_NOTRACE is not set # CONFIG_UPROBE_EVENTS is not set CONFIG_BPF_EVENTS=y +CONFIG_DYNAMIC_EVENTS=y CONFIG_PROBE_EVENTS=y CONFIG_DYNAMIC_FTRACE=y CONFIG_DYNAMIC_FTRACE_WITH_REGS=y @@ -9701,6 +9740,7 @@ CONFIG_TEST_UDELAY=m CONFIG_TEST_STATIC_KEYS=m # CONFIG_TEST_KMOD is not set # CONFIG_TEST_MEMCAT_P is not set +CONFIG_TEST_OBJAGG=m CONFIG_MEMTEST=y # CONFIG_BUG_ON_DATA_CORRUPTION is not set # CONFIG_SAMPLES is not set diff --git a/gnu/packages/aux-files/linux-libre/4.20-x86_64.conf b/gnu/packages/aux-files/linux-libre/5.0-x86_64.conf similarity index 99% rename from gnu/packages/aux-files/linux-libre/4.20-x86_64.conf rename to gnu/packages/aux-files/linux-libre/5.0-x86_64.conf index 4918e6bdf2..9e1a7eff0e 100644 --- a/gnu/packages/aux-files/linux-libre/4.20-x86_64.conf +++ b/gnu/packages/aux-files/linux-libre/5.0-x86_64.conf @@ -1,6 +1,6 @@ # # Automatically generated file; DO NOT EDIT. -# Linux/x86 4.20.0-gnu Kernel Configuration +# Linux/x86 5.0.0-gnu Kernel Configuration # # @@ -9,6 +9,7 @@ CONFIG_CC_IS_GCC=y CONFIG_GCC_VERSION=70400 CONFIG_CLANG_VERSION=0 +CONFIG_CC_HAS_ASM_GOTO=y CONFIG_IRQ_WORK=y CONFIG_BUILDTIME_EXTABLE_SORT=y CONFIG_THREAD_INFO_IN_TASK=y @@ -44,8 +45,6 @@ CONFIG_USELIB=y CONFIG_AUDIT=y CONFIG_HAVE_ARCH_AUDITSYSCALL=y CONFIG_AUDITSYSCALL=y -CONFIG_AUDIT_WATCH=y -CONFIG_AUDIT_TREE=y # # IRQ subsystem @@ -283,7 +282,7 @@ CONFIG_X86_X2APIC=y CONFIG_X86_MPPARSE=y # CONFIG_GOLDFISH is not set CONFIG_RETPOLINE=y -# CONFIG_INTEL_RDT is not set +# CONFIG_X86_CPU_RESCTRL is not set CONFIG_X86_EXTENDED_PLATFORM=y CONFIG_X86_NUMACHIP=y # CONFIG_X86_VSMP is not set @@ -313,6 +312,7 @@ CONFIG_XEN_SAVE_RESTORE=y # CONFIG_XEN_DEBUG_FS is not set CONFIG_XEN_PVH=y CONFIG_KVM_GUEST=y +CONFIG_PVH=y CONFIG_KVM_DEBUG_FS=y # CONFIG_PARAVIRT_TIME_ACCOUNTING is not set CONFIG_PARAVIRT_CLOCK=y @@ -477,6 +477,7 @@ CONFIG_PM_TRACE=y CONFIG_PM_TRACE_RTC=y CONFIG_PM_CLK=y CONFIG_WQ_POWER_EFFICIENT_DEFAULT=y +# CONFIG_ENERGY_MODEL is not set CONFIG_ARCH_SUPPORTS_ACPI=y CONFIG_ACPI=y CONFIG_ACPI_LEGACY_TABLES_LOOKUP=y @@ -520,6 +521,7 @@ CONFIG_ACPI_HED=y CONFIG_ACPI_BGRT=y # CONFIG_ACPI_REDUCED_HARDWARE_ONLY is not set CONFIG_ACPI_NFIT=m +# CONFIG_NFIT_SECURITY_DEBUG is not set CONFIG_HAVE_ACPI_APEI=y CONFIG_HAVE_ACPI_APEI_NMI=y CONFIG_ACPI_APEI=y @@ -585,112 +587,14 @@ CONFIG_INTEL_IDLE=y # # Bus options (PCI etc.) # -CONFIG_PCI=y CONFIG_PCI_DIRECT=y CONFIG_PCI_MMCONFIG=y CONFIG_PCI_XEN=y -CONFIG_PCI_DOMAINS=y CONFIG_MMCONF_FAM10H=y # CONFIG_PCI_CNB20LE_QUIRK is not set -CONFIG_PCIEPORTBUS=y -CONFIG_HOTPLUG_PCI_PCIE=y -CONFIG_PCIEAER=y -# CONFIG_PCIEAER_INJECT is not set -# CONFIG_PCIE_ECRC is not set -CONFIG_PCIEASPM=y -CONFIG_PCIEASPM_DEBUG=y -CONFIG_PCIEASPM_DEFAULT=y -# CONFIG_PCIEASPM_POWERSAVE is not set -# CONFIG_PCIEASPM_POWER_SUPERSAVE is not set -# CONFIG_PCIEASPM_PERFORMANCE is not set -CONFIG_PCIE_PME=y -CONFIG_PCIE_DPC=y -CONFIG_PCIE_PTM=y -CONFIG_PCI_MSI=y -CONFIG_PCI_MSI_IRQ_DOMAIN=y -CONFIG_PCI_QUIRKS=y -# CONFIG_PCI_DEBUG is not set -CONFIG_PCI_REALLOC_ENABLE_AUTO=y -CONFIG_PCI_STUB=m -# CONFIG_PCI_PF_STUB is not set -CONFIG_XEN_PCIDEV_FRONTEND=m -CONFIG_PCI_ATS=y -CONFIG_PCI_LOCKLESS_CONFIG=y -CONFIG_PCI_IOV=y -CONFIG_PCI_PRI=y -CONFIG_PCI_PASID=y -# CONFIG_PCI_P2PDMA is not set -CONFIG_PCI_LABEL=y -CONFIG_PCI_HYPERV=m -CONFIG_HOTPLUG_PCI=y -CONFIG_HOTPLUG_PCI_ACPI=y -CONFIG_HOTPLUG_PCI_ACPI_IBM=m -CONFIG_HOTPLUG_PCI_CPCI=y -CONFIG_HOTPLUG_PCI_CPCI_ZT5550=m -CONFIG_HOTPLUG_PCI_CPCI_GENERIC=m -CONFIG_HOTPLUG_PCI_SHPC=y - -# -# PCI controller drivers -# - -# -# Cadence PCIe controllers support -# -# CONFIG_VMD is not set - -# -# DesignWare PCI Core Support -# -# CONFIG_PCIE_DW_PLAT_HOST is not set - -# -# PCI Endpoint -# -# CONFIG_PCI_ENDPOINT is not set - -# -# PCI switch controller drivers -# -CONFIG_PCI_SW_SWITCHTEC=m # CONFIG_ISA_BUS is not set CONFIG_ISA_DMA_API=y CONFIG_AMD_NB=y -CONFIG_PCCARD=m -CONFIG_PCMCIA=m -CONFIG_PCMCIA_LOAD_CIS=y -CONFIG_CARDBUS=y - -# -# PC-card bridges -# -CONFIG_YENTA=m -CONFIG_YENTA_O2=y -CONFIG_YENTA_RICOH=y -CONFIG_YENTA_TI=y -CONFIG_YENTA_ENE_TUNE=y -CONFIG_YENTA_TOSHIBA=y -CONFIG_PD6729=m -CONFIG_I82092=m -CONFIG_PCCARD_NONSTATIC=y -CONFIG_RAPIDIO=y -CONFIG_RAPIDIO_TSI721=m -CONFIG_RAPIDIO_DISC_TIMEOUT=30 -# CONFIG_RAPIDIO_ENABLE_RX_TX_PORTS is not set -CONFIG_RAPIDIO_DMA_ENGINE=y -# CONFIG_RAPIDIO_DEBUG is not set -CONFIG_RAPIDIO_ENUM_BASIC=m -CONFIG_RAPIDIO_CHMAN=m -CONFIG_RAPIDIO_MPORT_CDEV=m - -# -# RapidIO Switch drivers -# -CONFIG_RAPIDIO_TSI57X=m -CONFIG_RAPIDIO_CPS_XX=m -CONFIG_RAPIDIO_TSI568=m -CONFIG_RAPIDIO_CPS_GEN2=m -CONFIG_RAPIDIO_RXS_GEN3=m # CONFIG_X86_SYSFB is not set # @@ -833,6 +737,7 @@ CONFIG_HAVE_ARCH_WITHIN_STACK_FRAMES=y CONFIG_HAVE_CONTEXT_TRACKING=y CONFIG_HAVE_VIRT_CPU_ACCOUNTING_GEN=y CONFIG_HAVE_IRQ_TIME_ACCOUNTING=y +CONFIG_HAVE_MOVE_PMD=y CONFIG_HAVE_ARCH_TRANSPARENT_HUGEPAGE=y CONFIG_HAVE_ARCH_TRANSPARENT_HUGEPAGE_PUD=y CONFIG_HAVE_ARCH_HUGE_VMAP=y @@ -904,7 +809,6 @@ CONFIG_BLK_DEV_THROTTLING=y CONFIG_BLK_CMDLINE_PARSER=y CONFIG_BLK_WBT=y # CONFIG_BLK_CGROUP_IOLATENCY is not set -# CONFIG_BLK_WBT_SQ is not set CONFIG_BLK_WBT_MQ=y CONFIG_BLK_DEBUG_FS=y CONFIG_BLK_DEBUG_FS_ZONED=y @@ -943,14 +847,6 @@ CONFIG_BLK_PM=y # # IO Schedulers # -CONFIG_IOSCHED_NOOP=y -CONFIG_IOSCHED_DEADLINE=y -CONFIG_IOSCHED_CFQ=y -CONFIG_CFQ_GROUP_IOSCHED=y -CONFIG_DEFAULT_DEADLINE=y -# CONFIG_DEFAULT_CFQ is not set -# CONFIG_DEFAULT_NOOP is not set -CONFIG_DEFAULT_IOSCHED="deadline" CONFIG_MQ_IOSCHED_DEADLINE=m CONFIG_MQ_IOSCHED_KYBER=m CONFIG_IOSCHED_BFQ=m @@ -1058,6 +954,7 @@ CONFIG_NET=y CONFIG_COMPAT_NETLINK_MESSAGES=y CONFIG_NET_INGRESS=y CONFIG_NET_EGRESS=y +CONFIG_SKB_EXTENSIONS=y # # Networking options @@ -1226,9 +1123,6 @@ CONFIG_NF_CT_NETLINK_HELPER=m CONFIG_NETFILTER_NETLINK_GLUE_CT=y CONFIG_NF_NAT=m CONFIG_NF_NAT_NEEDED=y -CONFIG_NF_NAT_PROTO_DCCP=y -CONFIG_NF_NAT_PROTO_UDPLITE=y -CONFIG_NF_NAT_PROTO_SCTP=y CONFIG_NF_NAT_AMANDA=m CONFIG_NF_NAT_FTP=m CONFIG_NF_NAT_IRC=m @@ -1434,7 +1328,6 @@ CONFIG_NF_REJECT_IPV4=m CONFIG_NF_NAT_IPV4=m CONFIG_NF_NAT_MASQUERADE_IPV4=y CONFIG_NF_NAT_SNMP_BASIC=m -CONFIG_NF_NAT_PROTO_GRE=m CONFIG_NF_NAT_PPTP=m CONFIG_NF_NAT_H323=m CONFIG_IP_NF_IPTABLES=m @@ -1577,6 +1470,7 @@ CONFIG_NET_DSA_TAG_DSA=y CONFIG_NET_DSA_TAG_EDSA=y CONFIG_NET_DSA_TAG_GSWIP=y CONFIG_NET_DSA_TAG_KSZ=y +CONFIG_NET_DSA_TAG_KSZ9477=y CONFIG_NET_DSA_TAG_LAN9303=y CONFIG_NET_DSA_TAG_MTK=y CONFIG_NET_DSA_TAG_TRAILER=y @@ -1997,6 +1891,108 @@ CONFIG_HAVE_EBPF_JIT=y # # Device Drivers # +CONFIG_HAVE_EISA=y +# CONFIG_EISA is not set +CONFIG_HAVE_PCI=y +CONFIG_PCI=y +CONFIG_PCI_DOMAINS=y +CONFIG_PCIEPORTBUS=y +CONFIG_HOTPLUG_PCI_PCIE=y +CONFIG_PCIEAER=y +# CONFIG_PCIEAER_INJECT is not set +# CONFIG_PCIE_ECRC is not set +CONFIG_PCIEASPM=y +CONFIG_PCIEASPM_DEBUG=y +CONFIG_PCIEASPM_DEFAULT=y +# CONFIG_PCIEASPM_POWERSAVE is not set +# CONFIG_PCIEASPM_POWER_SUPERSAVE is not set +# CONFIG_PCIEASPM_PERFORMANCE is not set +CONFIG_PCIE_PME=y +CONFIG_PCIE_DPC=y +CONFIG_PCIE_PTM=y +CONFIG_PCI_MSI=y +CONFIG_PCI_MSI_IRQ_DOMAIN=y +CONFIG_PCI_QUIRKS=y +# CONFIG_PCI_DEBUG is not set +CONFIG_PCI_REALLOC_ENABLE_AUTO=y +CONFIG_PCI_STUB=m +# CONFIG_PCI_PF_STUB is not set +CONFIG_XEN_PCIDEV_FRONTEND=m +CONFIG_PCI_ATS=y +CONFIG_PCI_LOCKLESS_CONFIG=y +CONFIG_PCI_IOV=y +CONFIG_PCI_PRI=y +CONFIG_PCI_PASID=y +# CONFIG_PCI_P2PDMA is not set +CONFIG_PCI_LABEL=y +CONFIG_PCI_HYPERV=m +CONFIG_HOTPLUG_PCI=y +CONFIG_HOTPLUG_PCI_ACPI=y +CONFIG_HOTPLUG_PCI_ACPI_IBM=m +CONFIG_HOTPLUG_PCI_CPCI=y +CONFIG_HOTPLUG_PCI_CPCI_ZT5550=m +CONFIG_HOTPLUG_PCI_CPCI_GENERIC=m +CONFIG_HOTPLUG_PCI_SHPC=y + +# +# PCI controller drivers +# + +# +# Cadence PCIe controllers support +# +# CONFIG_VMD is not set + +# +# DesignWare PCI Core Support +# +# CONFIG_PCIE_DW_PLAT_HOST is not set +# CONFIG_PCI_MESON is not set + +# +# PCI Endpoint +# +# CONFIG_PCI_ENDPOINT is not set + +# +# PCI switch controller drivers +# +CONFIG_PCI_SW_SWITCHTEC=m +CONFIG_PCCARD=m +CONFIG_PCMCIA=m +CONFIG_PCMCIA_LOAD_CIS=y +CONFIG_CARDBUS=y + +# +# PC-card bridges +# +CONFIG_YENTA=m +CONFIG_YENTA_O2=y +CONFIG_YENTA_RICOH=y +CONFIG_YENTA_TI=y +CONFIG_YENTA_ENE_TUNE=y +CONFIG_YENTA_TOSHIBA=y +CONFIG_PD6729=m +CONFIG_I82092=m +CONFIG_PCCARD_NONSTATIC=y +CONFIG_RAPIDIO=y +CONFIG_RAPIDIO_TSI721=m +CONFIG_RAPIDIO_DISC_TIMEOUT=30 +# CONFIG_RAPIDIO_ENABLE_RX_TX_PORTS is not set +CONFIG_RAPIDIO_DMA_ENGINE=y +# CONFIG_RAPIDIO_DEBUG is not set +CONFIG_RAPIDIO_ENUM_BASIC=m +CONFIG_RAPIDIO_CHMAN=m +CONFIG_RAPIDIO_MPORT_CDEV=m + +# +# RapidIO Switch drivers +# +CONFIG_RAPIDIO_TSI57X=m +CONFIG_RAPIDIO_CPS_XX=m +CONFIG_RAPIDIO_TSI568=m +CONFIG_RAPIDIO_CPS_GEN2=m +CONFIG_RAPIDIO_RXS_GEN3=m # # Generic Driver Options @@ -2047,16 +2043,16 @@ CONFIG_GNSS_SIRF_SERIAL=m CONFIG_GNSS_UBX_SERIAL=m CONFIG_MTD=m # CONFIG_MTD_TESTS is not set -CONFIG_MTD_REDBOOT_PARTS=m -CONFIG_MTD_REDBOOT_DIRECTORY_BLOCK=-1 -# CONFIG_MTD_REDBOOT_PARTS_UNALLOCATED is not set -# CONFIG_MTD_REDBOOT_PARTS_READONLY is not set CONFIG_MTD_CMDLINE_PARTS=m CONFIG_MTD_AR7_PARTS=m # # Partition parsers # +CONFIG_MTD_REDBOOT_PARTS=m +CONFIG_MTD_REDBOOT_DIRECTORY_BLOCK=-1 +# CONFIG_MTD_REDBOOT_PARTS_UNALLOCATED is not set +# CONFIG_MTD_REDBOOT_PARTS_READONLY is not set # # User Modules And Translation Layers @@ -2101,6 +2097,7 @@ CONFIG_MTD_ABSENT=m CONFIG_MTD_COMPLEX_MAPPINGS=y CONFIG_MTD_PHYSMAP=m # CONFIG_MTD_PHYSMAP_COMPAT is not set +# CONFIG_MTD_PHYSMAP_GPIO_ADDR is not set CONFIG_MTD_SBC_GXX=m CONFIG_MTD_AMD76XROM=m CONFIG_MTD_ICHXROM=m @@ -2112,10 +2109,8 @@ CONFIG_MTD_L440GX=m CONFIG_MTD_PCI=m CONFIG_MTD_PCMCIA=m # CONFIG_MTD_PCMCIA_ANONYMOUS is not set -CONFIG_MTD_GPIO_ADDR=m CONFIG_MTD_INTEL_VR_NOR=m CONFIG_MTD_PLATRAM=m -CONFIG_MTD_LATCH_ADDR=m # # Self-contained MTD device drivers @@ -2271,11 +2266,13 @@ CONFIG_BLK_DEV_NVME=y CONFIG_NVME_FABRICS=m CONFIG_NVME_RDMA=m CONFIG_NVME_FC=m +CONFIG_NVME_TCP=m CONFIG_NVME_TARGET=m CONFIG_NVME_TARGET_LOOP=m CONFIG_NVME_TARGET_RDMA=m CONFIG_NVME_TARGET_FC=m CONFIG_NVME_TARGET_FCLOOP=m +CONFIG_NVME_TARGET_TCP=m # # Misc devices @@ -2307,6 +2304,7 @@ CONFIG_LATTICE_ECP3_CONFIG=m CONFIG_SRAM=y # CONFIG_PCI_ENDPOINT_TEST is not set CONFIG_MISC_RTSX=m +CONFIG_PVPANIC=m CONFIG_C2PORT=m CONFIG_C2PORT_DURAMAR_2150=m @@ -2383,6 +2381,7 @@ CONFIG_VHOST_RING=m CONFIG_GENWQE=m CONFIG_GENWQE_PLATFORM_ERROR_RECOVERY=0 CONFIG_ECHO=m +CONFIG_MISC_ALCOR_PCI=m CONFIG_MISC_RTSX_PCI=m CONFIG_MISC_RTSX_USB=m CONFIG_HAVE_IDE=y @@ -2396,7 +2395,6 @@ CONFIG_RAID_ATTRS=m CONFIG_SCSI=y CONFIG_SCSI_DMA=y CONFIG_SCSI_NETLINK=y -# CONFIG_SCSI_MQ_DEFAULT is not set CONFIG_SCSI_PROC_FS=y # @@ -2475,6 +2473,7 @@ CONFIG_SCSI_UFSHCD=m CONFIG_SCSI_UFSHCD_PCI=m # CONFIG_SCSI_UFS_DWC_TC_PCI is not set CONFIG_SCSI_UFSHCD_PLATFORM=m +CONFIG_SCSI_UFS_CDNS_PLATFORM=m # CONFIG_SCSI_UFS_DWC_TC_PLATFORM is not set # CONFIG_SCSI_UFS_BSG is not set CONFIG_SCSI_HPTIOP=m @@ -2816,8 +2815,9 @@ CONFIG_NET_DSA_BCM_SF2=m CONFIG_NET_DSA_LANTIQ_GSWIP=m CONFIG_NET_DSA_MT7530=m CONFIG_NET_DSA_MV88E6060=m -CONFIG_MICROCHIP_KSZ=m -CONFIG_MICROCHIP_KSZ_SPI_DRIVER=m +CONFIG_NET_DSA_MICROCHIP_KSZ_COMMON=m +CONFIG_NET_DSA_MICROCHIP_KSZ9477=m +CONFIG_NET_DSA_MICROCHIP_KSZ9477_SPI=m CONFIG_NET_DSA_MV88E6XXX=m CONFIG_NET_DSA_MV88E6XXX_GLOBAL2=y # CONFIG_NET_DSA_MV88E6XXX_PTP is not set @@ -3249,6 +3249,7 @@ CONFIG_USB_IPHETH=m CONFIG_USB_SIERRA_NET=m CONFIG_USB_VL600=m CONFIG_USB_NET_CH9200=m +CONFIG_USB_NET_AQC111=m CONFIG_WLAN=y # CONFIG_WIRELESS_WDS is not set CONFIG_WLAN_VENDOR_ADMTEK=y @@ -3510,11 +3511,12 @@ CONFIG_ZD1211RW=m # CONFIG_ZD1211RW_DEBUG is not set CONFIG_WLAN_VENDOR_QUANTENNA=y CONFIG_QTNFMAC=m -CONFIG_QTNFMAC_PEARL_PCIE=m +CONFIG_QTNFMAC_PCIE=m CONFIG_PCMCIA_RAYCS=m CONFIG_PCMCIA_WL3501=m CONFIG_MAC80211_HWSIM=m CONFIG_USB_NET_RNDIS_WLAN=m +CONFIG_VIRT_WIFI=m # # WiMAX Wireless Broadband devices @@ -3656,13 +3658,6 @@ CONFIG_ISDN_DRV_AVMB1_B1PCMCIA=m CONFIG_ISDN_DRV_AVMB1_AVM_CS=m CONFIG_ISDN_DRV_AVMB1_T1PCI=m CONFIG_ISDN_DRV_AVMB1_C4=m -CONFIG_CAPI_EICON=y -CONFIG_ISDN_DIVAS=m -CONFIG_ISDN_DIVAS_BRIPCI=y -CONFIG_ISDN_DIVAS_PRIPCI=y -CONFIG_ISDN_DIVAS_DIVACAPI=m -CONFIG_ISDN_DIVAS_USERIDI=m -CONFIG_ISDN_DIVAS_MAINT=m CONFIG_ISDN_DRV_GIGASET=m # CONFIG_GIGASET_CAPI is not set CONFIG_GIGASET_I4L=y @@ -4005,6 +4000,7 @@ CONFIG_SERIO_RAW=m CONFIG_SERIO_ALTERA_PS2=m CONFIG_SERIO_PS2MULT=m CONFIG_SERIO_ARC_PS2=m +# CONFIG_SERIO_OLPC_APSP is not set CONFIG_HYPERV_KEYBOARD=m CONFIG_SERIO_GPIO_PS2=m CONFIG_USERIO=m @@ -4104,6 +4100,7 @@ CONFIG_SERIAL_MEN_Z135=m CONFIG_SERIAL_DEV_BUS=y CONFIG_SERIAL_DEV_CTRL_TTYPORT=y CONFIG_TTY_PRINTK=y +CONFIG_TTY_PRINTK_LEVEL=6 CONFIG_PRINTER=m # CONFIG_LP_CONSOLE is not set CONFIG_PPDEV=m @@ -4265,6 +4262,9 @@ CONFIG_I2C_SLAVE_EEPROM=m # CONFIG_I2C_DEBUG_CORE is not set # CONFIG_I2C_DEBUG_ALGO is not set # CONFIG_I2C_DEBUG_BUS is not set +CONFIG_I3C=m +CONFIG_CDNS_I3C_MASTER=m +CONFIG_DW_I3C_MASTER=m CONFIG_SPI=y # CONFIG_SPI_DEBUG is not set CONFIG_SPI_MASTER=y @@ -4290,6 +4290,7 @@ CONFIG_SPI_PXA2XX=m CONFIG_SPI_PXA2XX_PCI=m CONFIG_SPI_ROCKCHIP=m CONFIG_SPI_SC18IS602=m +CONFIG_SPI_MXIC=m CONFIG_SPI_XCOMM=m # CONFIG_SPI_XILINX is not set CONFIG_SPI_ZYNQMP_GQSPI=m @@ -4654,6 +4655,7 @@ CONFIG_SENSORS_NCT6775=m CONFIG_SENSORS_NCT7802=m CONFIG_SENSORS_NCT7904=m CONFIG_SENSORS_NPCM7XX=m +# CONFIG_SENSORS_OCC_P8_I2C is not set CONFIG_SENSORS_PCF8591=m CONFIG_PMBUS=m CONFIG_SENSORS_PMBUS=m @@ -4747,6 +4749,10 @@ CONFIG_THERMAL_GOV_POWER_ALLOCATOR=y CONFIG_CLOCK_THERMAL=y CONFIG_DEVFREQ_THERMAL=y CONFIG_THERMAL_EMULATION=y + +# +# Intel thermal drivers +# CONFIG_INTEL_POWERCLAMP=m CONFIG_X86_PKG_TEMP_THERMAL=m CONFIG_INTEL_SOC_DTS_IOSF_CORE=m @@ -4816,6 +4822,7 @@ CONFIG_60XX_WDT=m CONFIG_CPU5_WDT=m CONFIG_SMSC_SCH311X_WDT=m CONFIG_SMSC37B787_WDT=m +CONFIG_TQMX86_WDT=m CONFIG_VIA_WDT=m CONFIG_W83627HF_WDT=m CONFIG_W83877F_WDT=m @@ -4876,7 +4883,6 @@ CONFIG_MFD_CORE=y CONFIG_MFD_AS3711=y CONFIG_PMIC_ADP5520=y CONFIG_MFD_AAT2870_CORE=y -CONFIG_MFD_AT91_USART=m CONFIG_MFD_BCM590XX=m CONFIG_MFD_BD9571MWV=m CONFIG_MFD_AXP20X=m @@ -5109,6 +5115,7 @@ CONFIG_RC_LOOPBACK=m CONFIG_IR_SERIAL=m CONFIG_IR_SERIAL_TRANSMITTER=y CONFIG_IR_SIR=m +CONFIG_RC_XBOX_DVD=m CONFIG_MEDIA_SUPPORT=m # @@ -5129,7 +5136,6 @@ CONFIG_VIDEO_V4L2_SUBDEV_API=y CONFIG_VIDEO_V4L2=m # CONFIG_VIDEO_ADV_DEBUG is not set # CONFIG_VIDEO_FIXED_MINOR_RANGES is not set -# CONFIG_VIDEO_PCI_SKELETON is not set CONFIG_VIDEO_TUNER=m CONFIG_V4L2_MEM2MEM_DEV=m CONFIG_V4L2_FLASH_LED_CLASS=m @@ -5398,6 +5404,7 @@ CONFIG_VIDEO_VIA_CAMERA=m CONFIG_VIDEO_CADENCE=y CONFIG_VIDEO_CADENCE_CSI2RX=m CONFIG_VIDEO_CADENCE_CSI2TX=m +CONFIG_VIDEO_ASPEED=m CONFIG_SOC_CAMERA=m CONFIG_SOC_CAMERA_PLATFORM=m CONFIG_V4L_MEM2MEM_DRIVERS=y @@ -5413,6 +5420,8 @@ CONFIG_VIDEO_VICODEC=m CONFIG_DVB_PLATFORM_DRIVERS=y CONFIG_CEC_PLATFORM_DRIVERS=y CONFIG_VIDEO_CROS_EC_CEC=m +CONFIG_VIDEO_SECO_CEC=m +# CONFIG_VIDEO_SECO_RC is not set CONFIG_SDR_PLATFORM_DRIVERS=y # @@ -5930,7 +5939,7 @@ CONFIG_FB_SYS_FOPS=m CONFIG_FB_DEFERRED_IO=y CONFIG_FB_HECUBA=m CONFIG_FB_SVGALIB=m -CONFIG_FB_BACKLIGHT=y +CONFIG_FB_BACKLIGHT=m CONFIG_FB_MODE_HELPERS=y CONFIG_FB_TILEBLITTING=y @@ -6266,6 +6275,7 @@ CONFIG_SND_SOC_ACPI=m CONFIG_SND_SOC_AMD_ACP=m CONFIG_SND_SOC_AMD_CZ_DA7219MX98357_MACH=m CONFIG_SND_SOC_AMD_CZ_RT5645_MACH=m +CONFIG_SND_SOC_AMD_ACP3x=m CONFIG_SND_ATMEL_SOC=m CONFIG_SND_DESIGNWARE_I2S=m # CONFIG_SND_DESIGNWARE_PCM is not set @@ -6297,6 +6307,13 @@ CONFIG_SND_SST_ATOM_HIFI2_PLATFORM=m CONFIG_SND_SST_ATOM_HIFI2_PLATFORM_PCI=m CONFIG_SND_SST_ATOM_HIFI2_PLATFORM_ACPI=m CONFIG_SND_SOC_INTEL_SKYLAKE=m +CONFIG_SND_SOC_INTEL_SKL=m +CONFIG_SND_SOC_INTEL_APL=m +CONFIG_SND_SOC_INTEL_KBL=m +CONFIG_SND_SOC_INTEL_GLK=m +CONFIG_SND_SOC_INTEL_CNL=m +CONFIG_SND_SOC_INTEL_CFL=m +CONFIG_SND_SOC_INTEL_SKYLAKE_FAMILY=m CONFIG_SND_SOC_INTEL_SKYLAKE_SSP_CLK=m CONFIG_SND_SOC_INTEL_SKYLAKE_HDAUDIO_CODEC=y CONFIG_SND_SOC_INTEL_SKYLAKE_COMMON=m @@ -6323,12 +6340,14 @@ CONFIG_SND_SOC_INTEL_KBL_RT5663_MAX98927_MACH=m CONFIG_SND_SOC_INTEL_KBL_RT5663_RT5514_MAX98927_MACH=m CONFIG_SND_SOC_INTEL_KBL_DA7219_MAX98357A_MACH=m CONFIG_SND_SOC_INTEL_KBL_DA7219_MAX98927_MACH=m +CONFIG_SND_SOC_INTEL_KBL_RT5660_MACH=m CONFIG_SND_SOC_INTEL_GLK_RT5682_MAX98357A_MACH=m CONFIG_SND_SOC_INTEL_SKL_HDA_DSP_GENERIC_MACH=m # # STMicroelectronics STM32 SOC audio support # +CONFIG_SND_SOC_XILINX_I2S=m CONFIG_SND_SOC_XTFPGA_I2S=m CONFIG_ZX_TDM=m CONFIG_SND_SOC_I2C_AND_SPI=m @@ -6345,6 +6364,7 @@ CONFIG_SND_SOC_ADAU1761_I2C=m CONFIG_SND_SOC_ADAU1761_SPI=m CONFIG_SND_SOC_ADAU7002=m CONFIG_SND_SOC_AK4104=m +CONFIG_SND_SOC_AK4118=m CONFIG_SND_SOC_AK4458=m CONFIG_SND_SOC_AK4554=m CONFIG_SND_SOC_AK4613=m @@ -6427,6 +6447,7 @@ CONFIG_SND_SOC_RT5631=m CONFIG_SND_SOC_RT5640=m CONFIG_SND_SOC_RT5645=m CONFIG_SND_SOC_RT5651=m +CONFIG_SND_SOC_RT5660=m CONFIG_SND_SOC_RT5663=m CONFIG_SND_SOC_RT5670=m CONFIG_SND_SOC_RT5677=m @@ -7015,10 +7036,10 @@ CONFIG_TYPEC_MUX_PI3USB30532=m # USB Type-C Alternate Mode drivers # CONFIG_TYPEC_DP_ALTMODE=m +CONFIG_USB_ROLE_SWITCH=m CONFIG_USB_ROLES_INTEL_XHCI=m CONFIG_USB_LED_TRIG=y CONFIG_USB_ULPI_BUS=m -CONFIG_USB_ROLE_SWITCH=m CONFIG_UWB=m CONFIG_UWB_HWA=m CONFIG_UWB_WHCI=m @@ -7040,6 +7061,7 @@ CONFIG_MMC_SDHCI_ACPI=m CONFIG_MMC_SDHCI_PLTFM=m CONFIG_MMC_SDHCI_F_SDH30=m CONFIG_MMC_WBSD=m +CONFIG_MMC_ALCOR=m CONFIG_MMC_TIFM_SD=m CONFIG_MMC_SPI=m CONFIG_MMC_SDRICOH_CS=m @@ -7153,6 +7175,7 @@ CONFIG_LEDS_TRIGGER_CAMERA=m CONFIG_LEDS_TRIGGER_PANIC=y CONFIG_LEDS_TRIGGER_NETDEV=m CONFIG_LEDS_TRIGGER_PATTERN=m +CONFIG_LEDS_TRIGGER_AUDIO=m # CONFIG_ACCESSIBILITY is not set CONFIG_INFINIBAND=m CONFIG_INFINIBAND_USER_MAD=m @@ -7471,6 +7494,7 @@ CONFIG_XEN_AUTO_XLATE=y CONFIG_XEN_ACPI=y CONFIG_XEN_SYMS=y CONFIG_XEN_HAVE_VPMU=y +CONFIG_XEN_FRONT_PGDIR_SHBUF=m CONFIG_STAGING=y CONFIG_PRISM2_USB=m CONFIG_COMEDI=m @@ -7683,7 +7707,6 @@ CONFIG_ADE7854_SPI=m # # Resolver to digital converters # -CONFIG_AD2S90=m CONFIG_AD2S1210=m CONFIG_FB_SM750=m CONFIG_FB_XGI=m @@ -7715,6 +7738,7 @@ CONFIG_VIDEO_ZORAN_DC10=m CONFIG_VIDEO_ZORAN_LML33=m CONFIG_VIDEO_ZORAN_LML33R10=m CONFIG_VIDEO_ZORAN_AVS6EYES=m +CONFIG_VIDEO_IPU3_IMGU=m # # Android @@ -7723,8 +7747,6 @@ CONFIG_LTE_GDM724X=m CONFIG_FIREWIRE_SERIAL=m CONFIG_FWTTY_MAX_TOTAL_PORTS=64 CONFIG_FWTTY_MAX_CARD_PORTS=32 -CONFIG_MTD_SPINAND_MT29F=m -CONFIG_MTD_SPINAND_ONDIEECC=y CONFIG_GS_FPGABOOT=m CONFIG_UNISYSSPAR=y CONFIG_UNISYS_VISORNIC=m @@ -7870,7 +7892,6 @@ CONFIG_SAMSUNG_Q10=m CONFIG_APPLE_GMUX=m CONFIG_INTEL_RST=m CONFIG_INTEL_SMARTCONNECT=m -CONFIG_PVPANIC=m CONFIG_INTEL_PMC_IPC=m CONFIG_INTEL_BXTWC_PMIC_TMU=m CONFIG_SURFACE_PRO3_BUTTON=m @@ -7883,6 +7904,7 @@ CONFIG_INTEL_TELEMETRY=m CONFIG_INTEL_CHTDC_TI_PWRBTN=m CONFIG_I2C_MULTI_INSTANTIATE=m CONFIG_INTEL_ATOMISP2_PM=m +CONFIG_HUAWEI_WMI=m CONFIG_PMC_ATOM=y CONFIG_CHROME_PLATFORMS=y CONFIG_CHROMEOS_LAPTOP=m @@ -8081,6 +8103,7 @@ CONFIG_STK8BA50=m # Analog to digital converters # CONFIG_AD_SIGMA_DELTA=m +CONFIG_AD7124=m CONFIG_AD7266=m CONFIG_AD7291=m CONFIG_AD7298=m @@ -8090,6 +8113,7 @@ CONFIG_AD7791=m CONFIG_AD7793=m CONFIG_AD7887=m CONFIG_AD7923=m +CONFIG_AD7949=m CONFIG_AD799X=m CONFIG_AXP20X_ADC=m CONFIG_AXP288_ADC=m @@ -8208,6 +8232,7 @@ CONFIG_MCP4725=m CONFIG_MCP4922=m CONFIG_TI_DAC082S085=m CONFIG_TI_DAC5571=m +CONFIG_TI_DAC7311=m # # IIO dummy driver @@ -8336,6 +8361,7 @@ CONFIG_TSL2772=m CONFIG_TSL4531=m CONFIG_US5182D=m CONFIG_VCNL4000=m +CONFIG_VCNL4035=m CONFIG_VEML6070=m CONFIG_VL6180=m CONFIG_ZOPT2201=m @@ -8357,6 +8383,9 @@ CONFIG_IIO_ST_MAGN_SPI_3AXIS=m CONFIG_SENSORS_HMC5843=m CONFIG_SENSORS_HMC5843_I2C=m CONFIG_SENSORS_HMC5843_SPI=m +CONFIG_SENSORS_RM3100=m +CONFIG_SENSORS_RM3100_I2C=m +CONFIG_SENSORS_RM3100_SPI=m # # Multiplexers @@ -8386,6 +8415,7 @@ CONFIG_MAX5487=m CONFIG_MCP4018=m CONFIG_MCP4131=m CONFIG_MCP4531=m +CONFIG_MCP41010=m CONFIG_TPL0102=m # @@ -8439,6 +8469,7 @@ CONFIG_VL53L0X_I2C=m # # Resolver to digital converters # +CONFIG_AD2S90=m CONFIG_AD2S1200=m # @@ -8495,6 +8526,7 @@ CONFIG_PWM_TWL_LED=m # IRQ chip support # CONFIG_ARM_GIC_MAX_NR=1 +CONFIG_MADERA_IRQ=m CONFIG_IPACK_BUS=m CONFIG_BOARD_TPCI200=m CONFIG_SERIAL_IPOCTAL=m @@ -8545,6 +8577,7 @@ CONFIG_BTT=y CONFIG_ND_PFN=m CONFIG_NVDIMM_PFN=y CONFIG_NVDIMM_DAX=y +CONFIG_NVDIMM_KEYS=y CONFIG_DAX_DRIVER=y CONFIG_DAX=y CONFIG_DEV_DAX=m @@ -9018,6 +9051,7 @@ CONFIG_IMA_DEFAULT_HASH="sha1" # CONFIG_IMA_WRITE_POLICY is not set # CONFIG_IMA_READ_POLICY is not set CONFIG_IMA_APPRAISE=y +# CONFIG_IMA_ARCH_POLICY is not set # CONFIG_IMA_APPRAISE_BUILD_POLICY is not set CONFIG_IMA_APPRAISE_BOOTPARAM=y CONFIG_IMA_TRUSTED_KEYRING=y @@ -9115,6 +9149,10 @@ CONFIG_CRYPTO_OFB=m CONFIG_CRYPTO_PCBC=m CONFIG_CRYPTO_XTS=m CONFIG_CRYPTO_KEYWRAP=m +CONFIG_CRYPTO_NHPOLY1305=m +CONFIG_CRYPTO_NHPOLY1305_SSE2=m +CONFIG_CRYPTO_NHPOLY1305_AVX2=m +CONFIG_CRYPTO_ADIANTUM=m # # Hash modes @@ -9151,6 +9189,7 @@ CONFIG_CRYPTO_SHA256=y CONFIG_CRYPTO_SHA512=y CONFIG_CRYPTO_SHA3=m CONFIG_CRYPTO_SM3=m +CONFIG_CRYPTO_STREEBOG=m CONFIG_CRYPTO_TGR192=m CONFIG_CRYPTO_WP512=m CONFIG_CRYPTO_GHASH_CLMUL_NI_INTEL=m @@ -9221,6 +9260,7 @@ CONFIG_CRYPTO_USER_API_HASH=m CONFIG_CRYPTO_USER_API_SKCIPHER=m CONFIG_CRYPTO_USER_API_RNG=m CONFIG_CRYPTO_USER_API_AEAD=m +# CONFIG_CRYPTO_STATS is not set CONFIG_CRYPTO_HASH_INFO=y CONFIG_CRYPTO_HW=y CONFIG_CRYPTO_DEV_PADLOCK=y @@ -9268,6 +9308,7 @@ CONFIG_BINARY_PRINTF=y # Library routines # CONFIG_RAID6_PQ=m +CONFIG_RAID6_PQ_BENCHMARK=y CONFIG_BITREVERSE=y CONFIG_RATIONAL=y CONFIG_GENERIC_STRNCPY_FROM_USER=y @@ -9293,7 +9334,7 @@ CONFIG_CRC64=m CONFIG_CRC7=m CONFIG_LIBCRC32C=m CONFIG_CRC8=m -CONFIG_XXHASH=m +CONFIG_XXHASH=y # CONFIG_RANDOM32_SELFTEST is not set CONFIG_842_COMPRESS=m CONFIG_842_DECOMPRESS=m @@ -9342,7 +9383,6 @@ CONFIG_HAS_DMA=y CONFIG_NEED_SG_DMA_LENGTH=y CONFIG_NEED_DMA_MAP_STATE=y CONFIG_ARCH_DMA_ADDR_T_64BIT=y -CONFIG_DMA_DIRECT_OPS=y CONFIG_DMA_VIRT_OPS=y CONFIG_SWIOTLB=y CONFIG_SGL_ALLOC=y @@ -9367,13 +9407,13 @@ CONFIG_FONT_SUPPORT=y CONFIG_FONT_8x8=y CONFIG_FONT_8x16=y CONFIG_SG_POOL=y -CONFIG_ARCH_HAS_SG_CHAIN=y CONFIG_ARCH_HAS_PMEM_API=y CONFIG_ARCH_HAS_UACCESS_FLUSHCACHE=y CONFIG_ARCH_HAS_UACCESS_MCSAFE=y CONFIG_SBITMAP=y CONFIG_PARMAN=m # CONFIG_STRING_SELFTEST is not set +CONFIG_OBJAGG=m # # Kernel hacking @@ -9434,7 +9474,9 @@ CONFIG_MEMORY_NOTIFIER_ERROR_INJECT=m CONFIG_HAVE_DEBUG_STACKOVERFLOW=y # CONFIG_DEBUG_STACKOVERFLOW is not set CONFIG_HAVE_ARCH_KASAN=y +CONFIG_CC_HAS_KASAN_GENERIC=y # CONFIG_KASAN is not set +CONFIG_KASAN_STACK=1 CONFIG_ARCH_HAS_KCOV=y CONFIG_CC_HAS_SANCOV_TRACE_PC=y # CONFIG_KCOV is not set @@ -9547,6 +9589,7 @@ CONFIG_KPROBE_EVENTS=y # CONFIG_KPROBE_EVENTS_ON_NOTRACE is not set # CONFIG_UPROBE_EVENTS is not set CONFIG_BPF_EVENTS=y +CONFIG_DYNAMIC_EVENTS=y CONFIG_PROBE_EVENTS=y CONFIG_DYNAMIC_FTRACE=y CONFIG_DYNAMIC_FTRACE_WITH_REGS=y @@ -9599,6 +9642,7 @@ CONFIG_TEST_UDELAY=m CONFIG_TEST_STATIC_KEYS=m # CONFIG_TEST_KMOD is not set # CONFIG_TEST_MEMCAT_P is not set +CONFIG_TEST_OBJAGG=m CONFIG_MEMTEST=y # CONFIG_BUG_ON_DATA_CORRUPTION is not set # CONFIG_SAMPLES is not set diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index bc9bf154b4..931680a047 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -414,10 +414,10 @@ for ARCH and optionally VARIANT, or #f if there is no such configuration." It has been modified to remove all non-free binary blobs.") (license license:gpl2))) -(define %linux-libre-version "4.20.13") -(define %linux-libre-hash "00rqdsqyz0csdblcmifyhkgzvsmnqsh090i6h30146rsf3707xad") +(define %linux-libre-version "5.0") +(define %linux-libre-hash "18gs0kl5xvbmh725m7crg6iyqw3p8qq421aql7z0nlk035fh5xbx") -(define %linux-libre-4.20-patches +(define %linux-libre-5.0-patches (list %boot-logo-patch %linux-libre-arm-export-__sync_icache_dcache-patch)) @@ -425,7 +425,7 @@ It has been modified to remove all non-free binary blobs.") (make-linux-libre %linux-libre-version %linux-libre-hash '("x86_64-linux" "i686-linux" "armhf-linux" "aarch64-linux") - #:patches %linux-libre-4.20-patches + #:patches %linux-libre-5.0-patches #:configuration-file kernel-config)) (define %linux-libre-4.19-version "4.19.27") @@ -467,7 +467,7 @@ It has been modified to remove all non-free binary blobs.") (make-linux-libre %linux-libre-version %linux-libre-hash '("armhf-linux") - #:patches %linux-libre-4.20-patches + #:patches %linux-libre-5.0-patches #:defconfig "multi_v7_defconfig" #:extra-version "arm-generic")) @@ -490,7 +490,7 @@ It has been modified to remove all non-free binary blobs.") (make-linux-libre %linux-libre-version %linux-libre-hash '("armhf-linux") - #:patches %linux-libre-4.20-patches + #:patches %linux-libre-5.0-patches #:defconfig "omap2plus_defconfig" #:extra-version "arm-omap2plus")) From a4678c6ba18d8dbd79d931f80426eebf61be7ebe Mon Sep 17 00:00:00 2001 From: Caleb Ristvedt Date: Wed, 30 Jan 2019 17:03:38 -0600 Subject: [PATCH 036/194] database: Make 'register-items' transactional. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * guix/store/database.scm (SQLITE_BUSY, register-output-sql): New variables. (add-references): Don't try finalizing after each use, only after all the uses (otherwise a finalized statement would be used if #:cache? was #f). (call-with-transaction): New procedure. (register-items): Use call-with-transaction to prevent broken intermediate states from being visible. * .dir-locals.el (call-with-transaction): indent it. Signed-off-by: Ludovic Courtès --- .dir-locals.el | 1 + guix/store/database.scm | 52 +++++++++++++++++++++++++++++++---------- 2 files changed, 41 insertions(+), 12 deletions(-) diff --git a/.dir-locals.el b/.dir-locals.el index 593c767d2b..550e06ef09 100644 --- a/.dir-locals.el +++ b/.dir-locals.el @@ -79,6 +79,7 @@ (eval . (put 'with-extensions 'scheme-indent-function 1)) (eval . (put 'with-database 'scheme-indent-function 2)) + (eval . (put 'call-with-transaction 'scheme-indent-function 2)) (eval . (put 'call-with-container 'scheme-indent-function 1)) (eval . (put 'container-excursion 'scheme-indent-function 1)) diff --git a/guix/store/database.scm b/guix/store/database.scm index 4791f49865..88d05dc42e 100644 --- a/guix/store/database.scm +++ b/guix/store/database.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2017 Caleb Ristvedt +;;; Copyright © 2017, 2019 Caleb Ristvedt ;;; Copyright © 2018 Ludovic Courtès ;;; ;;; This file is part of GNU Guix. @@ -96,6 +96,31 @@ create it and initialize it as a new database." (lambda () (sqlite-close db))))) +;; XXX: missing in guile-sqlite3@0.1.0 +(define SQLITE_BUSY 5) + +(define (call-with-transaction db proc) + "Start a transaction with DB (make as many attempts as necessary) and run +PROC. If PROC exits abnormally, abort the transaction, otherwise commit the +transaction after it finishes." + (catch 'sqlite-error + (lambda () + ;; We use begin immediate here so that if we need to retry, we + ;; figure that out immediately rather than because some SQLITE_BUSY + ;; exception gets thrown partway through PROC - in which case the + ;; part already executed (which may contain side-effects!) would be + ;; executed again for every retry. + (sqlite-exec db "begin immediate;") + (let ((result (proc))) + (sqlite-exec db "commit;") + result)) + (lambda (key who error description) + (if (= error SQLITE_BUSY) + (call-with-transaction db proc) + (begin + (sqlite-exec db "rollback;") + (throw 'sqlite-error who error description)))))) + (define %default-database-file ;; Default location of the store database. (string-append %store-database-directory "/db.sqlite")) @@ -172,9 +197,9 @@ ids of items referred to." (sqlite-bind-arguments stmt #:referrer referrer #:reference reference) (sqlite-fold cons '() stmt) ;execute it - (sqlite-finalize stmt) (last-insert-row-id db)) - references))) + references) + (sqlite-finalize stmt))) (define* (sqlite-register db #:key path (references '()) deriver hash nar-size time) @@ -305,6 +330,7 @@ Write a progress report to LOG-PORT." (define real-file-name (string-append store-dir "/" (basename (store-info-item item)))) + ;; When TO-REGISTER is already registered, skip it. This makes a ;; significant differences when 'register-closures' is called ;; consecutively for overlapping closures such as 'system' and 'bootcfg'. @@ -325,12 +351,14 @@ Write a progress report to LOG-PORT." (mkdir-p db-dir) (parameterize ((sql-schema schema)) (with-database (string-append db-dir "/db.sqlite") db - (let* ((prefix (format #f "registering ~a items" (length items))) - (progress (progress-reporter/bar (length items) - prefix log-port))) - (call-with-progress-reporter progress - (lambda (report) - (for-each (lambda (item) - (register db item) - (report)) - items))))))) + (call-with-transaction db + (lambda () + (let* ((prefix (format #f "registering ~a items" (length items))) + (progress (progress-reporter/bar (length items) + prefix log-port))) + (call-with-progress-reporter progress + (lambda (report) + (for-each (lambda (item) + (register db item) + (report)) + items))))))))) From 2cb658a9a7c491ee8ea13da9682170e40deb25ed Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ludovic=20Court=C3=A8s?= Date: Wed, 6 Mar 2019 23:48:41 +0100 Subject: [PATCH 037/194] describe: Add 'package-provenance'. * guix/scripts/package.scm (package-provenance): Move to... * guix/describe.scm (package-provenance): ... here. --- guix/describe.scm | 43 ++++++++++++++++++++++++++++++++++++++-- guix/scripts/package.scm | 36 +-------------------------------- 2 files changed, 42 insertions(+), 37 deletions(-) diff --git a/guix/describe.scm b/guix/describe.scm index 670db63ce7..c31199c9cd 100644 --- a/guix/describe.scm +++ b/guix/describe.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2018 Ludovic Courtès +;;; Copyright © 2018, 2019 Ludovic Courtès ;;; ;;; This file is part of GNU Guix. ;;; @@ -19,11 +19,16 @@ (define-module (guix describe) #:use-module (guix memoization) #:use-module (guix profiles) + #:use-module (guix packages) + #:use-module ((guix utils) #:select (location-file)) + #:use-module ((guix store) #:select (%store-prefix)) #:use-module (srfi srfi-1) #:use-module (ice-9 match) #:export (current-profile current-profile-entries - package-path-entries)) + package-path-entries + + package-provenance)) ;;; Commentary: ;;; @@ -73,3 +78,37 @@ process lives in, when applicable." "/share/guile/site/" (effective-version)))) (current-profile-entries)))) + +(define (package-provenance package) + "Return the provenance of PACKAGE as an sexp for use as the 'provenance' +property of manifest entries, or #f if it could not be determined." + (define (entry-source entry) + (match (assq 'source + (manifest-entry-properties entry)) + (('source value) value) + (_ #f))) + + (match (and=> (package-location package) location-file) + (#f #f) + (file + (let ((file (if (string-prefix? "/" file) + file + (search-path %load-path file)))) + (and file + (string-prefix? (%store-prefix) file) + + ;; Always store information about the 'guix' channel and + ;; optionally about the specific channel FILE comes from. + (or (let ((main (and=> (find (lambda (entry) + (string=? "guix" + (manifest-entry-name entry))) + (current-profile-entries)) + entry-source)) + (extra (any (lambda (entry) + (let ((item (manifest-entry-item entry))) + (and (string-prefix? item file) + (entry-source entry)))) + (current-profile-entries)))) + (and main + `(,main + ,@(if extra (list extra) '())))))))))) diff --git a/guix/scripts/package.scm b/guix/scripts/package.scm index 0e70315708..efff511299 100644 --- a/guix/scripts/package.scm +++ b/guix/scripts/package.scm @@ -36,7 +36,7 @@ #:use-module (guix config) #:use-module (guix scripts) #:use-module (guix scripts build) - #:autoload (guix describe) (current-profile-entries) + #:autoload (guix describe) (package-provenance) #:use-module ((guix build utils) #:select (directory-exists? mkdir-p)) #:use-module (ice-9 format) @@ -552,40 +552,6 @@ upgrading, #f otherwise." (output "out") ;XXX: wild guess (item item)))) -(define (package-provenance package) - "Return the provenance of PACKAGE as an sexp for use as the 'provenance' -property of manifest entries, or #f if it could not be determined." - (define (entry-source entry) - (match (assq 'source - (manifest-entry-properties entry)) - (('source value) value) - (_ #f))) - - (match (and=> (package-location package) location-file) - (#f #f) - (file - (let ((file (if (string-prefix? "/" file) - file - (search-path %load-path file)))) - (and file - (string-prefix? (%store-prefix) file) - - ;; Always store information about the 'guix' channel and - ;; optionally about the specific channel FILE comes from. - (or (let ((main (and=> (find (lambda (entry) - (string=? "guix" - (manifest-entry-name entry))) - (current-profile-entries)) - entry-source)) - (extra (any (lambda (entry) - (let ((item (manifest-entry-item entry))) - (and (string-prefix? item file) - (entry-source entry)))) - (current-profile-entries)))) - (and main - `(,main - ,@(if extra (list extra) '())))))))))) - (define (package->manifest-entry* package output) "Like 'package->manifest-entry', but attach PACKAGE provenance meta-data to the resulting manifest entry." From d40ec4a0d00df08ec4f866467080235f5a9fea87 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ludovic=20Court=C3=A8s?= Date: Wed, 6 Mar 2019 23:53:08 +0100 Subject: [PATCH 038/194] pack: Add '--save-provenance'. * guix/scripts/pack.scm (show-help, %options): Add '--save-provenance'. (guix-pack)[manifest-from-args]: Honor it. * doc/guix.texi (Invoking guix pack): Document it. --- doc/guix.texi | 17 +++++++++++++++++ guix/scripts/pack.scm | 27 ++++++++++++++++++++++++++- 2 files changed, 43 insertions(+), 1 deletion(-) diff --git a/doc/guix.texi b/doc/guix.texi index 1b77881eb6..0f325fb542 100644 --- a/doc/guix.texi +++ b/doc/guix.texi @@ -4777,6 +4777,23 @@ symlink target. For instance, @code{-S /opt/gnu/bin=bin} creates a @file{/opt/gnu/bin} symlink pointing to the @file{bin} sub-directory of the profile. +@item --save-provenance +Save provenance information for the packages passed on the command line. +Provenance information includes the URL and commit of the channels in use +(@pxref{Channels}). + +Provenance information is saved in the +@file{/gnu/store/@dots{}-profile/manifest} file in the pack, along with the +usual package metadata---the name and version of each package, their +propagated inputs, and so on. It is useful information to the recipient of +the pack, who then knows how the pack was (supposedly) obtained. + +This option is not enabled by default because, like timestamps, provenance +information contributes nothing to the build process. In other words, there +is an infinity of channel URLs and commit IDs that can lead to the same pack. +Recording such ``silent'' metadata in the output thus potentially breaks the +source-to-binary bitwise reproducibility property. + @item --localstatedir @itemx --profile-name=@var{name} Include the ``local state directory'', @file{/var/guix}, in the resulting diff --git a/guix/scripts/pack.scm b/guix/scripts/pack.scm index 86e15d9bab..e2ecddfbfc 100644 --- a/guix/scripts/pack.scm +++ b/guix/scripts/pack.scm @@ -32,6 +32,7 @@ #:use-module (guix modules) #:use-module (guix packages) #:use-module (guix profiles) + #:use-module (guix describe) #:use-module (guix derivations) #:use-module (guix search-paths) #:use-module (guix build-system gnu) @@ -678,6 +679,9 @@ please email '~a'~%") (x (leave (G_ "~a: invalid symlink specification~%") arg))))) + (option '("save-provenance") #f #f + (lambda (opt name arg result) + (alist-cons 'save-provenance? #t result))) (option '("localstatedir") #f #f (lambda (opt name arg result) (alist-cons 'localstatedir? #t result))) @@ -725,6 +729,8 @@ Create a bundle of PACKAGE.\n")) -S, --symlink=SPEC create symlinks to the profile according to SPEC")) (display (G_ " -m, --manifest=FILE create a pack with the manifest from FILE")) + (display (G_ " + --save-provenance save provenance information")) (display (G_ " --localstatedir include /var/guix in the resulting pack")) (display (G_ " @@ -772,13 +778,32 @@ Create a bundle of PACKAGE.\n")) (list (transform store package) "out"))) (filter-map maybe-package-argument opts))) (manifest-file (assoc-ref opts 'manifest))) + (define properties + (if (assoc-ref opts 'save-provenance?) + (lambda (package) + (match (package-provenance package) + (#f + (warning (G_ "could not determine provenance of package ~a~%") + (package-full-name package)) + '()) + (sexp + `((provenance . ,sexp))))) + (const '()))) + (cond ((and manifest-file (not (null? packages))) (leave (G_ "both a manifest and a package list were given~%"))) (manifest-file (let ((user-module (make-user-module '((guix profiles) (gnu))))) (load* manifest-file user-module))) - (else (packages->manifest packages))))) + (else + (manifest + (map (match-lambda + ((package output) + (package->manifest-entry package output + #:properties + (properties package)))) + packages)))))) (with-error-handling (with-store store From abe6e670d356b8333b41c7359c0ab25a58fe736b Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Thu, 7 Mar 2019 01:34:18 +0100 Subject: [PATCH 039/194] gnu: sane-backends-minimal: Fix USB support. * gnu/packages/scanner.scm (sane-backends-minimal)[inputs]: Replace libusb-compat with libusb. [arguments]: Disable tests that require USB access. --- gnu/packages/scanner.scm | 26 +++++++++++++++++--------- 1 file changed, 17 insertions(+), 9 deletions(-) diff --git a/gnu/packages/scanner.scm b/gnu/packages/scanner.scm index d030d8ade5..462727bc59 100644 --- a/gnu/packages/scanner.scm +++ b/gnu/packages/scanner.scm @@ -2,7 +2,7 @@ ;;; Copyright © 2014 John Darrington ;;; Copyright © 2015 Andy Wingo ;;; Copyright © 2016 Andy Patterson -;;; Copyright © 2017 Tobias Geerinckx-Rice +;;; Copyright © 2017, 2019 Tobias Geerinckx-Rice ;;; Copyright © 2018 Efraim Flashner ;;; ;;; This file is part of GNU Guix. @@ -55,7 +55,7 @@ (native-inputs `(("pkg-config" ,pkg-config))) (inputs - `(("libusb-compat" ,libusb-compat))) + `(("libusb" ,libusb))) (arguments `(#:phases (modify-phases %standard-phases @@ -63,19 +63,27 @@ (lambda _ (setenv "BACKENDS" " ") #t)) - ;; Disable unmaintained tests that that fail with errors resembling: - ;; - ;; < # by sane-desc 3.5 from sane-backends 1.0.24git on Jul 31 2013 - ;; --- - ;; > # by sane-desc 3.5 from sane-backends 1.0.27 on 1970-01-01# - ;; FAIL: sane-desc -m usermap -s ./data - (add-before 'configure 'disable-failing-tests + (add-after 'unpack 'disable-failing-tests (lambda _ + ;; Disable unmaintained tests that that fail with errors resembling: + ;; + ;; < # by sane-desc 3.5 from sane-backends 1.0.24git on Jul 31 2013 + ;; --- + ;; > # by sane-desc 3.5 from sane-backends 1.0.27 on 1970-01-01# + ;; FAIL: sane-desc -m usermap -s ./data (for-each (lambda (pattern) (substitute* "testsuite/tools/Makefile.in" (((string-append " " pattern " ")) " "))) (list "usermap" "db" "udev" "udev\\+acl" "udev\\+hwdb" "hwdb")) + + ;; Disable tests that try to connect to actual USB hardware & fail + ;; with the following error when no USB access is allowed at all: + ;; + ;; sanei_usb_test: sanei_usb_test.c:849: main: Assertion + ;; `test_init (1)' failed. + (substitute* "testsuite/sanei/Makefile.in" + (("sanei_usb_test\\$\\(EXEEXT\\) ") "")) #t)) (add-after 'install 'install-udev-rules (lambda* (#:key outputs #:allow-other-keys) From 2702aa913648b308a4fdac0b2b27b722894265ed Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?G=C3=A1bor=20Boskovits?= Date: Thu, 7 Mar 2019 09:45:01 +0100 Subject: [PATCH 040/194] gnu: unibilium: Update to 2.0.0. * gnu/packages/terminal.scm (unibilium): Update to 2.0.0. [native-inputs]: Add perl. --- gnu/packages/terminals.scm | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/gnu/packages/terminals.scm b/gnu/packages/terminals.scm index 59cbe7cec7..b3979d8a41 100644 --- a/gnu/packages/terminals.scm +++ b/gnu/packages/terminals.scm @@ -410,7 +410,7 @@ has no notion of what's interesing, but it's very good at that notifying part.") (define-public unibilium (package (name "unibilium") - (version "1.2.1") + (version "2.0.0") (source (origin (method git-fetch) @@ -420,7 +420,7 @@ has no notion of what's interesing, but it's very good at that notifying part.") (file-name (git-file-name name version)) (sha256 (base32 - "11mbfijdrvbmdlmxs8j4vij78ki0vna89yg3r9n9g1i6j45hiq2r")))) + "1wa9a32wzqnxqh1jh554afj13dzjr6mw2wzqzw8d08nza9pg2ra2")))) (build-system gnu-build-system) (arguments `(#:make-flags @@ -433,7 +433,8 @@ has no notion of what's interesing, but it's very good at that notifying part.") (modify-phases %standard-phases (delete 'configure)))) (native-inputs - `(("libtool" ,libtool))) + `(("libtool" ,libtool) + ("perl" ,perl))) (home-page "https://github.com/mauke/unibilium") (synopsis "Terminfo parsing library") (description "Unibilium is a basic C terminfo library. It doesn't depend From 0a10abf73e7bb1d5f751229c709903a0f66574d2 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?G=C3=A1bor=20Boskovits?= Date: Wed, 6 Mar 2019 21:51:57 +0100 Subject: [PATCH 041/194] gnu: neovim: Fix #34616. This fixes a segmentation fault in neovim, where an error return value is passed in as a pointer. * gnu/packages/vim.scm (neovim)[arguments](phases): Add 'patch-tic phase. --- gnu/packages/vim.scm | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/gnu/packages/vim.scm b/gnu/packages/vim.scm index 5e1e9b852c..a6f4395f53 100644 --- a/gnu/packages/vim.scm +++ b/gnu/packages/vim.scm @@ -693,6 +693,12 @@ are detected, the user is notified."))) #:configure-flags '("-DPREFER_LUA:BOOL=YES") #:phases (modify-phases %standard-phases + ;; TODO: remove 'patch-tic on update + ;; see: https://github.com/neovim/neovim/issues/9687 + (add-after 'unpack 'patch-tic + (lambda _ + (substitute* "src/nvim/tui/tui.c" + (("value != NULL") "value != NULL && value != (char *)-1")))) (add-after 'unpack 'set-lua-paths (lambda* (#:key inputs #:allow-other-keys) (let* ((lua-version "5.2") From ccf24467305c2deeafd804276d7455327d09867b Mon Sep 17 00:00:00 2001 From: Kei Kebreau Date: Wed, 6 Mar 2019 22:03:04 -0500 Subject: [PATCH 042/194] gnu: minetest: Update to 5.0.0. * gnu/packages/games.scm (minetest-data, minetest): Update to 5.0.0. --- gnu/packages/games.scm | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 8e0ef76165..3752c6e022 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -1709,7 +1709,7 @@ match, cannon keep, and grave-itation pit.") (define minetest-data (package (name "minetest-data") - (version "0.4.17") + (version "5.0.0") (source (origin (method git-fetch) (uri (git-reference @@ -1718,7 +1718,7 @@ match, cannon keep, and grave-itation pit.") (file-name (git-file-name name version)) (sha256 (base32 - "1g8iw2pya32ifljbdx6z6rpcinmzm81i9minhi2bi1d500ailn7s")))) + "186i1pna2f3fwa2001y8mw5131h0sndhfdxzfqq2gnr1m83sjm0w")))) (build-system trivial-build-system) (native-inputs `(("source" ,source))) @@ -1743,7 +1743,7 @@ match, cannon keep, and grave-itation pit.") (define-public minetest (package (name "minetest") - (version "0.4.17.1") + (version "5.0.0") (source (origin (method git-fetch) (uri (git-reference @@ -1752,7 +1752,7 @@ match, cannon keep, and grave-itation pit.") (file-name (git-file-name name version)) (sha256 (base32 - "19sfblgh9mchkgw32n7gdvm7a8a9jxsl9cdlgmxn9bk9m939a2sg")) + "1b8n8nzlvmld1hl3zgs1xg4jbc1nsf1m2bn7fi794vdr06s6n911")) (modules '((guix build utils))) (snippet '(begin From 9cb4bda22297777dde64d1ca4aad1bb1f42076f3 Mon Sep 17 00:00:00 2001 From: Rutger Helling Date: Thu, 7 Mar 2019 12:05:38 +0100 Subject: [PATCH 043/194] gnu: nftables: Update to 0.9.0. * gnu/packages/linux.scm (nftables): Update to 0.9.0. [arguments]: Add "--disable-man-doc" configure flag. --- gnu/packages/linux.scm | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index 931680a047..7788fcf4da 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -24,7 +24,7 @@ ;;; Copyright © 2017 Gábor Boskovits ;;; Copyright © 2017 Mathieu Othacehe ;;; Copyright © 2017 Clément Lassieur -;;; Copyright © 2017, 2018 Rutger Helling +;;; Copyright © 2017, 2018, 2019 Rutger Helling ;;; Copyright © 2017 nee ;;; Copyright © 2017 Dave Love ;;; Copyright © 2018 Pierre-Antoine Rouby @@ -4442,7 +4442,7 @@ used by nftables.") (define-public nftables (package (name "nftables") - (version "0.8.1") + (version "0.9.0") (source (origin (method url-fetch) @@ -4450,8 +4450,10 @@ used by nftables.") "/files/nftables-" version ".tar.bz2")) (sha256 (base32 - "1i1gfy8l7qyhc5vlrpp63s0n5kybmc9pi4dywiq8rmkhrrnddsla")))) + "14bygs6vg2v448cw5r4pxqi8an29hw0m9vab8hpmgjmrzjsq30dd")))) (build-system gnu-build-system) + (arguments `(#:configure-flags + '("--disable-man-doc"))) ; FIXME: Needs docbook2x. (inputs `(("bison" ,bison) ("flex" ,flex) ("gmp" ,gmp) From 9fd6ad3e3557a8efeadf182af60e32c77b62b2af Mon Sep 17 00:00:00 2001 From: Rutger Helling Date: Thu, 7 Mar 2019 12:21:37 +0100 Subject: [PATCH 044/194] gnu: wireguard: Update to 0.0.20190227. * gnu/packages/vpn.scm (wireguard): Update to 0.0.20190227. [arguments]: Disable tests. --- gnu/packages/vpn.scm | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/gnu/packages/vpn.scm b/gnu/packages/vpn.scm index f15b111a92..6475a738d4 100644 --- a/gnu/packages/vpn.scm +++ b/gnu/packages/vpn.scm @@ -9,6 +9,7 @@ ;;; Copyright © 2018 Pierre Langlois ;;; Copyright © 2018 Meiyo Peng ;;; Copyright © 2019 Leo Famulari +;;; Copyright © 2019 Rutger Helling ;;; ;;; This file is part of GNU Guix. ;;; @@ -454,19 +455,20 @@ The peer-to-peer VPN implements a Layer 2 (Ethernet) network between the peers (define-public wireguard (package (name "wireguard") - (version "0.0.20190123") + (version "0.0.20190227") (source (origin (method url-fetch) (uri (string-append "https://git.zx2c4.com/WireGuard/snapshot/" "WireGuard-" version ".tar.xz")) (sha256 (base32 - "16yzzy4i0z2zslmyr3kppkvkrxryzwdil6v270w9w5mg65v3rlgd")))) + "0ybzycpjjidyiz88kkh67abvp3y30f34252dwpgf3ncj4vyjdnzw")))) (build-system gnu-build-system) (outputs '("out" ; The WireGuard userspace tools "kernel-patch")) ; A patch to build Linux with WireGuard support (arguments - `(#:make-flags + `(#:tests? #f ; No tests available. + #:make-flags (list "CC=gcc" "WITH_BASHCOMPLETION=yes" ;; Build and install the helper script wg-quick(8). From 237ee6f2b26ebb15a55dccd32f0feba25848e84c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 13:21:02 +0100 Subject: [PATCH 045/194] gnu: python2-fastlmm: Disable tests. * gnu/packages/machine-learning.scm (python2-fastlmm)[arguments]: Disable tests. --- gnu/packages/machine-learning.scm | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 34bcd82ad7..039e5a0a49 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -885,7 +885,8 @@ interactive learning.") "1q8c34rpmwkfy3r4d5172pzdkpfryj561897z9r3x22gq7813x1m")))) (build-system python-build-system) (arguments - `(#:python ,python-2)) ; only Python 2.7 is supported + `(#:tests? #f ; some test files are missing + #:python ,python-2)) ; only Python 2.7 is supported (propagated-inputs `(("python2-numpy" ,python2-numpy) ("python2-scipy" ,python2-scipy) From 3b296475bf6a54fc973cb11695427fee9ec3dcab Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 13:24:23 +0100 Subject: [PATCH 046/194] gnu: cd-hit: Support longer sequences. * gnu/packages/bioinformatics.scm (cd-hit)[arguments]: Pass MAX_SEQ to make flags. --- gnu/packages/bioinformatics.scm | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c0e4628a64..2a7d334b19 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1770,7 +1770,9 @@ high-throughput sequencing data – with an emphasis on simplicity.") `(#:tests? #f ; there are no tests #:make-flags ;; Executables are copied directly to the PREFIX. - (list (string-append "PREFIX=" (assoc-ref %outputs "out") "/bin")) + (list (string-append "PREFIX=" (assoc-ref %outputs "out") "/bin") + ;; Support longer sequences (e.g. Pacbio sequences) + "MAX_SEQ=60000000") #:phases (modify-phases %standard-phases ;; No "configure" script From 3189fad217e257fb9bef3e632a3f7b36ae05748a Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 13:39:45 +0100 Subject: [PATCH 047/194] gnu: neovim: Let build phase return #T. * gnu/packages/vim.scm (neovim)[arguments]: Return #T from "patch-tic" phase. --- gnu/packages/vim.scm | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/gnu/packages/vim.scm b/gnu/packages/vim.scm index a6f4395f53..6a98f0a5a4 100644 --- a/gnu/packages/vim.scm +++ b/gnu/packages/vim.scm @@ -698,7 +698,8 @@ are detected, the user is notified."))) (add-after 'unpack 'patch-tic (lambda _ (substitute* "src/nvim/tui/tui.c" - (("value != NULL") "value != NULL && value != (char *)-1")))) + (("value != NULL") "value != NULL && value != (char *)-1")) + #t)) (add-after 'unpack 'set-lua-paths (lambda* (#:key inputs #:allow-other-keys) (let* ((lua-version "5.2") From 1e1142d8cbcc81a804d7355fbf82abc3b2e6dca5 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Fri, 12 Oct 2018 01:04:33 +0200 Subject: [PATCH 048/194] gnu: Add nullmailer. * gnu/packages/mail.scm (nullmailer): New public variable. --- gnu/packages/mail.scm | 82 +++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 82 insertions(+) diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm index 90bd79ae3c..cdfb72c85a 100644 --- a/gnu/packages/mail.scm +++ b/gnu/packages/mail.scm @@ -46,6 +46,7 @@ (define-module (gnu packages mail) #:use-module (gnu packages) + #:use-module (gnu packages admin) #:use-module (gnu packages aspell) #:use-module (gnu packages autotools) #:use-module (gnu packages backup) @@ -225,6 +226,87 @@ software.") ;; Libraries are under LGPLv3+, and programs under GPLv3+. (list gpl3+ lgpl3+)))) +(define-public nullmailer + (package + (name "nullmailer") + (version "2.2") + (source + (origin + (method url-fetch) + (uri (list + (string-append "https://untroubled.org/nullmailer/" + "nullmailer-" version ".tar.gz") + ;; Previous releases are moved to this subdirectory. + (string-append "https://untroubled.org/nullmailer/archive/" + "nullmailer-" version ".tar.gz"))) + (sha256 + (base32 "0md8cf90fl2yf3zh9njjy42a673v4j4ygyq95xg7fzkygdigm1lq")))) + (build-system gnu-build-system) + (arguments + `(#:configure-flags + (list "--enable-tls" + "--localstatedir=/var" + "--sysconfdir=/etc") + #:phases + (modify-phases %standard-phases + (add-before 'check 'patch-test-FHS-file-names + (lambda _ + (with-directory-excursion "test" + (substitute* (list "functions.in" + "tests/send") + ;; Fix some shebangs later generated on the fly. + (("/bin/sh") (which "bash")))) + #t)) + (add-before 'check 'pass-PATH-to-tests + ;; ‘runtest’ launches each test through ‘env -’, clearing $PATH. The + ;; tests then source ‘functions’, which first demands a working $PATH + ;; only to clobber it later. Pass our $PATH to the test environment + ;; and don't touch it after that. + (lambda _ + (with-directory-excursion "test" + (substitute* "runtests" + (("env - bash") + (string-append "env - PATH=\"" (getenv "PATH") "\" bash"))) + (substitute* "functions.in" + (("export PATH=.*") ""))) + #t)) + (add-before 'check 'delete-failing-tests + (lambda _ + (with-directory-excursion "test/tests" + (for-each delete-file + (list + ;; XXX ‘nullmailer-inject: nullmailer-queue failed: 15’ + "inject/queue" + ;; XXX These require the not-yet-packaged tcpserver. + "protocols" "smtp-auth"))) + #t)) + (add-before 'install 'skip-install-data-local + ;; Don't attempt to install run-time files outside of the store. + (lambda _ + (substitute* "Makefile" + ((" install-data-local") "")) + #t))))) + (native-inputs + ;; For tests. + `(("daemontools" ,daemontools))) ; for svc + (inputs + `(("gnutls" ,gnutls))) + (home-page "https://untroubled.org/nullmailer/") + (synopsis "Simple relay-only mail transfer agent") + (description + "Nullmailer is a simple replacement @acronym{MTA, Mail Transfer Agent} for +hosts that receive no local mail and only relay mail to a fixed set of smart +relays. It's useful for systems such as Web servers that must be able to send +email notifications, without having to run a full-blown MTA such as sendmail +or qmail. + +Nullmailer is designed to be simple to configure, easy to extend, and secure. +It requires little ongoing administration. The included @command{sendmail} +emulator front-end should allow most (if not all) sendmail-compatible programs +to run without any changes.") + (license (list lgpl2.1+ ; lib/cli++/ (but some files lack headers) + gpl2+)))) ; everything else + (define-public fetchmail (package (name "fetchmail") From b60e9fb82fd45d48eeeff9a8abc38a6a1a8ab981 Mon Sep 17 00:00:00 2001 From: Pierre Neidhardt Date: Thu, 7 Mar 2019 17:12:46 +0100 Subject: [PATCH 049/194] gnu: fuseiso: Fix typo in description. * gnu/packages/linux.scm (fuseiso)[description]: Fix typo. --- gnu/packages/linux.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index 7788fcf4da..3b7a769fac 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -3276,8 +3276,8 @@ write access to exFAT devices.") (synopsis "Mount ISO file system images") (description "FuseISO is a FUSE module to mount ISO filesystem images (.iso, .nrg, -.bin, .mdf and .img files). It currently support plain ISO9660 Level 1 and 2, -Rock Ridge, Joliet, and zisofs.") +.bin, .mdf and .img files). It supports plain ISO9660 Level 1 and 2, Rock +Ridge, Joliet, and zisofs.") (license license:gpl2))) (define-public gpm From f6f67b87c08fe7b901db834c714aceaef2b62b60 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ludovic=20Court=C3=A8s?= Date: Sun, 3 Mar 2019 11:46:43 +0100 Subject: [PATCH 050/194] system: Add (gnu system accounts). The (gnu system accounts) module is meant to be used both on the build- and on the host-side. * gnu/system/shadow.scm : Call 'default-shell'. (, ): Move to... * gnu/system/accounts.scm: ... here. New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add system/accounts.scm. --- gnu/local.mk | 1 + gnu/system/accounts.scm | 81 +++++++++++++++++++++++++++++++++++++++++ gnu/system/shadow.scm | 72 +++++++++++++----------------------- 3 files changed, 107 insertions(+), 47 deletions(-) create mode 100644 gnu/system/accounts.scm diff --git a/gnu/local.mk b/gnu/local.mk index 29fb31bf2d..d6d9209830 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -532,6 +532,7 @@ GNU_SYSTEM_MODULES = \ %D%/services/xorg.scm \ \ %D%/system.scm \ + %D%/system/accounts.scm \ %D%/system/file-systems.scm \ %D%/system/install.scm \ %D%/system/linux-container.scm \ diff --git a/gnu/system/accounts.scm b/gnu/system/accounts.scm new file mode 100644 index 0000000000..36ee62e851 --- /dev/null +++ b/gnu/system/accounts.scm @@ -0,0 +1,81 @@ +;;; GNU Guix --- Functional package management for GNU +;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès +;;; +;;; This file is part of GNU Guix. +;;; +;;; GNU Guix is free software; you can redistribute it and/or modify it +;;; under the terms of the GNU General Public License as published by +;;; the Free Software Foundation; either version 3 of the License, or (at +;;; your option) any later version. +;;; +;;; GNU Guix is distributed in the hope that it will be useful, but +;;; WITHOUT ANY WARRANTY; without even the implied warranty of +;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;;; GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with GNU Guix. If not, see . + +(define-module (gnu system accounts) + #:use-module (guix records) + #:export (user-account + user-account? + user-account-name + user-account-password + user-account-uid + user-account-group + user-account-supplementary-groups + user-account-comment + user-account-home-directory + user-account-create-home-directory? + user-account-shell + user-account-system? + + user-group + user-group? + user-group-name + user-group-password + user-group-id + user-group-system? + + default-shell)) + + +;;; Commentary: +;;; +;;; Data structures representing user accounts and user groups. This is meant +;;; to be used both on the host side and at run time--e.g., in activation +;;; snippets. +;;; +;;; Code: + +(define default-shell + ;; Default shell for user accounts (a string or string-valued gexp). + (make-parameter "/bin/sh")) + +(define-record-type* + user-account make-user-account + user-account? + (name user-account-name) + (password user-account-password (default #f)) + (uid user-account-uid (default #f)) + (group user-account-group) ; number | string + (supplementary-groups user-account-supplementary-groups + (default '())) ; list of strings + (comment user-account-comment (default "")) + (home-directory user-account-home-directory) + (create-home-directory? user-account-create-home-directory? ;Boolean + (default #t)) + (shell user-account-shell ; gexp + (default (default-shell))) + (system? user-account-system? ; Boolean + (default #f))) + +(define-record-type* + user-group make-user-group + user-group? + (name user-group-name) + (password user-group-password (default #f)) + (id user-group-id (default #f)) + (system? user-group-system? ; Boolean + (default #f))) diff --git a/gnu/system/shadow.scm b/gnu/system/shadow.scm index 63f544cec9..a9a4afd414 100644 --- a/gnu/system/shadow.scm +++ b/gnu/system/shadow.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018 Ludovic Courtès +;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès ;;; Copyright © 2016 Alex Griffin ;;; ;;; This file is part of GNU Guix. @@ -24,6 +24,7 @@ #:use-module (guix modules) #:use-module (guix sets) #:use-module (guix ui) + #:use-module (gnu system accounts) #:use-module (gnu services) #:use-module (gnu services shepherd) #:use-module ((gnu system file-systems) @@ -36,27 +37,29 @@ #:use-module (srfi srfi-26) #:use-module (srfi srfi-34) #:use-module (srfi srfi-35) - #:export (user-account - user-account? - user-account-name - user-account-password - user-account-uid - user-account-group - user-account-supplementary-groups - user-account-comment - user-account-home-directory - user-account-create-home-directory? - user-account-shell - user-account-system? - user-group - user-group? - user-group-name - user-group-password - user-group-id - user-group-system? + ;; Re-export these bindings for backward compatibility. + #:re-export (user-account + user-account? + user-account-name + user-account-password + user-account-uid + user-account-group + user-account-supplementary-groups + user-account-comment + user-account-home-directory + user-account-create-home-directory? + user-account-shell + user-account-system? - default-skeletons + user-group + user-group? + user-group-name + user-group-password + user-group-id + user-group-system?) + + #:export (default-skeletons skeleton-directory %base-groups %base-user-accounts @@ -70,33 +73,8 @@ ;;; ;;; Code: -(define-record-type* - user-account make-user-account - user-account? - (name user-account-name) - (password user-account-password (default #f)) - (uid user-account-uid (default #f)) - (group user-account-group) ; number | string - (supplementary-groups user-account-supplementary-groups - (default '())) ; list of strings - (comment user-account-comment (default "")) - (home-directory user-account-home-directory) - (create-home-directory? user-account-create-home-directory? ;Boolean - (default #t)) - (shell user-account-shell ; gexp - (default (file-append bash "/bin/bash"))) - (system? user-account-system? ; Boolean - (default #f))) - -(define-record-type* - user-group make-user-group - user-group? - (name user-group-name) - (password user-group-password (default #f)) - (id user-group-id (default #f)) - (system? user-group-system? ; Boolean - (default #f))) - +;; Change the default shell used by new records. +(default-shell (file-append bash "/bin/bash")) (define %base-groups ;; Default set of groups. From 6061d01512081c93c53fdd1d4302b36696403061 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ludovic=20Court=C3=A8s?= Date: Sun, 3 Mar 2019 21:57:26 +0100 Subject: [PATCH 051/194] activation: Operate on and records. * gnu/system/accounts.scm (sexp->user-group, sexp->user-account): New procedures. * gnu/system/shadow.scm (account-activation): Call them in the arguments to 'activate-users+groups'. (account-shepherd-service): Likewise. * gnu/build/activation.scm (activate-users+groups): Expect a list of and a list of . Replace uses of 'match' on tuples with calls to record accessors. (activate-user-home): Likewise. --- gnu/build/activation.scm | 118 ++++++++++++++++++++------------------- gnu/system/accounts.scm | 28 ++++++++++ gnu/system/shadow.scm | 22 +++++--- 3 files changed, 103 insertions(+), 65 deletions(-) diff --git a/gnu/build/activation.scm b/gnu/build/activation.scm index d516f5bdc9..e777015980 100644 --- a/gnu/build/activation.scm +++ b/gnu/build/activation.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018 Ludovic Courtès +;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès ;;; Copyright © 2015 Mark H Weaver ;;; ;;; This file is part of GNU Guix. @@ -18,6 +18,7 @@ ;;; along with GNU Guix. If not, see . (define-module (gnu build activation) + #:use-module (gnu system accounts) #:use-module (gnu build linux-boot) #:use-module (guix build utils) #:use-module (ice-9 ftw) @@ -212,37 +213,42 @@ logged in." (apply add-user name group rest))) (define (activate-users+groups users groups) - "Make sure the accounts listed in USERS and the user groups listed in GROUPS -are all available. - -Each item in USERS is a list of all the characteristics of a user account; -each item in GROUPS is a tuple with the group name, group password or #f, and -numeric gid or #f." + "Make sure USERS (a list of user account records) and GROUPS (a list of user +group records) are all available." (define (touch file) (close-port (open-file file "a0b"))) (define activate-user - (match-lambda - ((name uid group supplementary-groups comment home create-home? - shell password system?) - (let ((profile-dir (string-append "/var/guix/profiles/per-user/" - name))) - (ensure-user name group - #:uid uid - #:system? system? - #:supplementary-groups supplementary-groups - #:comment comment - #:home home - #:create-home? create-home? + (lambda (user) + (let ((name (user-account-name user)) + (uid (user-account-uid user)) + (group (user-account-group user)) + (supplementary-groups + (user-account-supplementary-groups user)) + (comment (user-account-comment user)) + (home (user-account-home-directory user)) + (create-home? (user-account-create-home-directory? user)) + (shell (user-account-shell user)) + (password (user-account-password user)) + (system? (user-account-system? user))) + (let ((profile-dir (string-append "/var/guix/profiles/per-user/" + name))) + (ensure-user name group + #:uid uid + #:system? system? + #:supplementary-groups supplementary-groups + #:comment comment + #:home home + #:create-home? create-home? - #:shell shell - #:password password) + #:shell shell + #:password password) - (unless system? - ;; Create the profile directory for the new account. - (let ((pw (getpwnam name))) - (mkdir-p profile-dir) - (chown profile-dir (passwd:uid pw) (passwd:gid pw)))))))) + (unless system? + ;; Create the profile directory for the new account. + (let ((pw (getpwnam name))) + (mkdir-p profile-dir) + (chown profile-dir (passwd:uid pw) (passwd:gid pw)))))))) ;; 'groupadd' aborts if the file doesn't already exist. (touch "/etc/group") @@ -251,18 +257,18 @@ numeric gid or #f." (mkdir-p "/var/lib") ;; Create the root account so we can use 'useradd' and 'groupadd'. - (activate-user (find (match-lambda - ((name (? zero?) _ ...) #t) - (_ #f)) - users)) + (activate-user (find (compose zero? user-account-uid) users)) ;; Then create the groups. - (for-each (match-lambda - ((name password gid system?) - (unless (false-if-exception (getgrnam name)) - (add-group name - #:gid gid #:password password - #:system? system?)))) + (for-each (lambda (group) + (let ((name (user-group-name group)) + (password (user-group-password group)) + (gid (user-group-id group)) + (system? (user-group-system? group))) + (unless (false-if-exception (getgrnam name)) + (add-group name + #:gid gid #:password password + #:system? system?)))) groups) ;; Create the other user accounts. @@ -272,35 +278,33 @@ numeric gid or #f." (for-each delete-user (lset-difference string=? (map passwd:name (current-users)) - (match users - (((names . _) ...) - names)))) + (map user-account-name users))) (for-each delete-group (lset-difference string=? (map group:name (current-groups)) - (match groups - (((names . _) ...) - names))))) + (map user-group-name groups)))) (define (activate-user-home users) "Create and populate the home directory of USERS, a list of tuples, unless they already exist." (define ensure-user-home - (match-lambda - ((name uid group supplementary-groups comment home create-home? - shell password system?) - ;; The home directories of system accounts are created during - ;; activation, not here. - (unless (or (not home) (not create-home?) system? - (directory-exists? home)) - (let* ((pw (getpwnam name)) - (uid (passwd:uid pw)) - (gid (passwd:gid pw))) - (mkdir-p home) - (chown home uid gid) - (chmod home #o700) - (copy-account-skeletons home - #:uid uid #:gid gid)))))) + (lambda (user) + (let ((name (user-account-name user)) + (home (user-account-home-directory user)) + (create-home? (user-account-create-home-directory? user)) + (system? (user-account-system? user))) + ;; The home directories of system accounts are created during + ;; activation, not here. + (unless (or (not home) (not create-home?) system? + (directory-exists? home)) + (let* ((pw (getpwnam name)) + (uid (passwd:uid pw)) + (gid (passwd:gid pw))) + (mkdir-p home) + (chown home uid gid) + (chmod home #o700) + (copy-account-skeletons home + #:uid uid #:gid gid)))))) (for-each ensure-user-home users)) diff --git a/gnu/system/accounts.scm b/gnu/system/accounts.scm index 36ee62e851..eb18fb5e43 100644 --- a/gnu/system/accounts.scm +++ b/gnu/system/accounts.scm @@ -18,6 +18,7 @@ (define-module (gnu system accounts) #:use-module (guix records) + #:use-module (ice-9 match) #:export (user-account user-account? user-account-name @@ -38,6 +39,9 @@ user-group-id user-group-system? + sexp->user-account + sexp->user-group + default-shell)) @@ -79,3 +83,27 @@ (id user-group-id (default #f)) (system? user-group-system? ; Boolean (default #f))) + +(define (sexp->user-group sexp) + "Take SEXP, a tuple as returned by 'user-group->gexp', and turn it into a +user-group record." + (match sexp + ((name password id system?) + (user-group (name name) + (password password) + (id id) + (system? system?))))) + +(define (sexp->user-account sexp) + "Take SEXP, a tuple as returned by 'user-account->gexp', and turn it into a +user-account record." + (match sexp + ((name uid group supplementary-groups comment home-directory + create-home-directory? shell password system?) + (user-account (name name) (uid uid) (group group) + (supplementary-groups supplementary-groups) + (comment comment) + (home-directory home-directory) + (create-home-directory? create-home-directory?) + (shell shell) (password password) + (system? system?))))) diff --git a/gnu/system/shadow.scm b/gnu/system/shadow.scm index a9a4afd414..4e5b6ae5f2 100644 --- a/gnu/system/shadow.scm +++ b/gnu/system/shadow.scm @@ -298,11 +298,14 @@ group." (assert-valid-users/groups accounts groups) ;; Add users and user groups. - #~(begin - (setenv "PATH" - (string-append #$(@ (gnu packages admin) shadow) "/sbin")) - (activate-users+groups (list #$@user-specs) - (list #$@group-specs)))) + (with-imported-modules (source-module-closure '((gnu system accounts))) + #~(begin + (use-modules (gnu system accounts)) + + (setenv "PATH" + (string-append #$(@ (gnu packages admin) shadow) "/sbin")) + (activate-users+groups (map sexp->user-account (list #$@user-specs)) + (map sexp->user-group (list #$@group-specs)))))) (define (account-shepherd-service accounts+groups) "Return a Shepherd service that creates the home directories for the user @@ -322,12 +325,15 @@ accounts among ACCOUNTS+GROUPS." (list (shepherd-service (requirement '(file-systems)) (provision '(user-homes)) - (modules '((gnu build activation))) + (modules '((gnu build activation) + (gnu system accounts))) (start (with-imported-modules (source-module-closure - '((gnu build activation))) + '((gnu build activation) + (gnu system accounts))) #~(lambda () (activate-user-home - (list #$@(map user-account->gexp accounts))) + (map sexp->user-account + (list #$@(map user-account->gexp accounts)))) #f))) ;stop (stop #~(const #f)) (respawn? #f) From ec600e4544729f1aaf46fa5162bba334515d0de5 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ludovic=20Court=C3=A8s?= Date: Sun, 3 Mar 2019 18:42:37 +0100 Subject: [PATCH 052/194] Add (gnu build accounts). * gnu/build/accounts.scm, tests/accounts.scm: New files. * Makefile.am (SCM_TESTS): Add tests/accounts.scm. * gnu/local.mk (GNU_SYSTEM_MODULES): Add build/accounts.scm. --- Makefile.am | 1 + gnu/build/accounts.scm | 561 +++++++++++++++++++++++++++++++++++++++++ gnu/local.mk | 1 + tests/accounts.scm | 309 +++++++++++++++++++++++ 4 files changed, 872 insertions(+) create mode 100644 gnu/build/accounts.scm create mode 100644 tests/accounts.scm diff --git a/Makefile.am b/Makefile.am index 2abafd13e8..cf35770ba7 100644 --- a/Makefile.am +++ b/Makefile.am @@ -392,6 +392,7 @@ SCM_TESTS = \ tests/file-systems.scm \ tests/uuid.scm \ tests/system.scm \ + tests/accounts.scm \ tests/services.scm \ tests/scripts-build.scm \ tests/containers.scm \ diff --git a/gnu/build/accounts.scm b/gnu/build/accounts.scm new file mode 100644 index 0000000000..6b44ab610b --- /dev/null +++ b/gnu/build/accounts.scm @@ -0,0 +1,561 @@ +;;; GNU Guix --- Functional package management for GNU +;;; Copyright © 2019 Ludovic Courtès +;;; +;;; This file is part of GNU Guix. +;;; +;;; GNU Guix is free software; you can redistribute it and/or modify it +;;; under the terms of the GNU General Public License as published by +;;; the Free Software Foundation; either version 3 of the License, or (at +;;; your option) any later version. +;;; +;;; GNU Guix is distributed in the hope that it will be useful, but +;;; WITHOUT ANY WARRANTY; without even the implied warranty of +;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;;; GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with GNU Guix. If not, see . + +(define-module (gnu build accounts) + #:use-module (guix records) + #:use-module (guix combinators) + #:use-module (gnu system accounts) + #:use-module (srfi srfi-1) + #:use-module (srfi srfi-11) + #:use-module (srfi srfi-19) + #:use-module (srfi srfi-26) + #:use-module (ice-9 match) + #:use-module (ice-9 vlist) + #:use-module (ice-9 rdelim) + #:export (password-entry + password-entry? + password-entry-name + password-entry-uid + password-entry-gid + password-entry-real-name + password-entry-directory + password-entry-shell + + shadow-entry + shadow-entry? + shadow-entry-name + shadow-entry-minimum-change-period + shadow-entry-maximum-change-period + shadow-entry-change-warning-time + shadow-entry-maximum-inactivity + shadow-entry-expiration + + group-entry + group-entry? + group-entry-name + group-entry-gid + group-entry-members + + write-group + write-passwd + write-shadow + read-group + read-passwd + read-shadow + + %id-min + %id-max + %system-id-min + %system-id-max + + user+group-databases)) + +;;; Commentary: +;;; +;;; This modules provides functionality equivalent to the C library's +;;; , , and routines, as well as a subset of the +;;; functionality of the Shadow command-line tools. It can parse and write +;;; /etc/passwd, /etc/shadow, and /etc/group. It can also take care of UID +;;; and GID allocation in a way similar to what 'useradd' does. +;;; +;;; The benefit is twofold: less code is involved, and the ID allocation +;;; strategy and state preservation is made explicit. +;;; +;;; Code: + + +;;; +;;; Machinery to define user and group databases. +;;; + +(define-syntax serialize-field + (syntax-rules (serialization) + ((_ entry (field get (serialization ->string string->) _ ...)) + (->string (get entry))) + ((_ entry (field get _ ...)) + (get entry)))) + +(define-syntax deserialize-field + (syntax-rules (serialization) + ((_ str (field get (serialization ->string string->) _ ...)) + (string-> str)) + ((_ str (field get _ ...)) + str))) + +(define-syntax let/fields + (syntax-rules () + ((_ (((name get attributes ...) rest ...) lst) body ...) + (let ((l lst)) + (let ((name (deserialize-field (car l) + (name get attributes ...)))) + (let/fields ((rest ...) (cdr l)) body ...)))) + ((_ (() lst) body ...) + (begin body ...)))) + +(define-syntax define-database-entry + (syntax-rules (serialization) + "Define a record data type, as per 'define-record-type*', with additional +information on how to serialize and deserialize the whole database as well as +each field." + ((_ record make-record record? + (serialization separator entry->string string->entry) + fields ...) + (let-syntax ((field-name + (syntax-rules () + ((_ (name _ (... ...))) name)))) + (define-record-type* record make-record + record? + fields ...) + + (define (entry->string entry) + (string-join (list (serialize-field entry fields) ...) + (string separator))) + + (define (string->entry str) + (let/fields ((fields ...) (string-split str #\:)) + (make-record (field-name fields) ...))))))) + + +(define number->string* + (match-lambda + ((? number? number) (number->string number)) + (_ ""))) + +(define (false-if-string=? false-string) + (lambda (str) + (if (string=? str false-string) + #f + str))) + +(define (string-if-false str) + (lambda (obj) + (if (not obj) str obj))) + +(define (comma-separated->list str) + (string-tokenize str (char-set-complement (char-set #\,)))) + +(define (list->comma-separated lst) + (string-join lst ",")) + + +;;; +;;; Database definitions. +;;; + +(define-database-entry ; + password-entry make-password-entry + password-entry? + (serialization #\: password-entry->string string->password-entry) + + (name password-entry-name) + (password password-entry-password + (serialization (const "x") (const #f)) + (default "x")) + (uid password-entry-uid + (serialization number->string string->number)) + (gid password-entry-gid + (serialization number->string string->number)) + (real-name password-entry-real-name + (default "")) + (directory password-entry-directory) + (shell password-entry-shell + (default "/bin/sh"))) + +(define-database-entry ; + shadow-entry make-shadow-entry + shadow-entry? + (serialization #\: shadow-entry->string string->shadow-entry) + + (name shadow-entry-name) ;string + (password shadow-entry-password ;string | #f + (serialization (string-if-false "!") + (false-if-string=? "!")) + (default #f)) + (last-change shadow-entry-last-change ;days since 1970-01-01 + (serialization number->string* string->number) + (default 0)) + (minimum-change-period shadow-entry-minimum-change-period + (serialization number->string* string->number) + (default #f)) ;days | #f + (maximum-change-period shadow-entry-maximum-change-period + (serialization number->string* string->number) + (default #f)) ;days | #f + (change-warning-time shadow-entry-change-warning-time + (serialization number->string* string->number) + (default #f)) ;days | #f + (maximum-inactivity shadow-entry-maximum-inactivity + (serialization number->string* string->number) + (default #f)) ;days | #f + (expiration shadow-entry-expiration + (serialization number->string* string->number) + (default #f)) ;days since 1970-01-01 | #f + (flags shadow-entry-flags ;"reserved" + (serialization number->string* string->number) + (default #f))) + +(define-database-entry ; + group-entry make-group-entry + group-entry? + (serialization #\: group-entry->string string->group-entry) + + (name group-entry-name) + (password group-entry-password + (serialization (string-if-false "x") + (false-if-string=? "x")) + (default #f)) + (gid group-entry-gid + (serialization number->string string->number)) + (members group-entry-members + (serialization list->comma-separated comma-separated->list) + (default '()))) + +(define (database-writer file mode entry->string) + (lambda* (entries #:optional (file-or-port file)) + "Write ENTRIES to FILE-OR-PORT. When FILE-OR-PORT is a file name, write +to it atomically and set the appropriate permissions." + (define (write-entries port) + (for-each (lambda (entry) + (display (entry->string entry) port) + (newline port)) + entries)) + + (if (port? file-or-port) + (write-entries file-or-port) + (let* ((template (string-append file-or-port ".XXXXXX")) + (port (mkstemp! template))) + (dynamic-wind + (const #t) + (lambda () + (chmod port mode) + (write-entries port) + (rename-file template file-or-port)) + (lambda () + (close-port port) + (when (file-exists? template) + (delete-file template)))))))) + +(define write-passwd + (database-writer "/etc/passwd" #o644 password-entry->string)) +(define write-shadow + (database-writer "/etc/shadow" #o600 shadow-entry->string)) +(define write-group + (database-writer "/etc/group" #o644 group-entry->string)) + +(define (database-reader file string->entry) + (lambda* (#:optional (file-or-port file)) + (define (read-entries port) + (let loop ((entries '())) + (match (read-line port) + ((? eof-object?) + (reverse entries)) + (line + (loop (cons (string->entry line) entries)))))) + + (if (port? file-or-port) + (read-entries file-or-port) + (call-with-input-file file-or-port + read-entries)))) + +(define read-passwd + (database-reader "/etc/passwd" string->password-entry)) +(define read-shadow + (database-reader "/etc/shadow" string->shadow-entry)) +(define read-group + (database-reader "/etc/group" string->group-entry)) + + +;;; +;;; Building databases. +;;; + +(define-record-type* + allocation make-allocation + allocation? + (ids allocation-ids (default vlist-null)) + (next-id allocation-next-id (default %id-min)) + (next-system-id allocation-next-system-id (default %system-id-max))) + +;; Trick to avoid name clashes... +(define-syntax %allocation (identifier-syntax allocation)) + +;; Minimum and maximum UIDs and GIDs (from find_new_uid.c and find_new_gid.c +;; in Shadow.) +(define %id-min 1000) +(define %id-max 60000) + +(define %system-id-min 100) +(define %system-id-max 999) + +(define (system-id? id) + (and (> id %system-id-min) + (<= id %system-id-max))) + +(define (user-id? id) + (and (>= id %id-min) + (< id %id-max))) + +(define* (allocate-id assignment #:key system?) + "Return two values: a newly allocated ID, and an updated record +based on ASSIGNMENT. If SYSTEM? is true, return a system ID." + (define next + ;; Return the next available ID, looping if necessary. + (if system? + (lambda (id) + (let ((next-id (- id 1))) + (if (< next-id %system-id-min) + %system-id-max + next-id))) + (lambda (id) + (let ((next-id (+ id 1))) + (if (>= next-id %id-max) + %id-min + next-id))))) + + (let loop ((id (if system? + (allocation-next-system-id assignment) + (allocation-next-id assignment)))) + (if (vhash-assv id (allocation-ids assignment)) + (loop (next id)) + (let ((taken (vhash-consv id #t (allocation-ids assignment)))) + (values (if system? + (allocation (inherit assignment) + (next-system-id (next id)) + (ids taken)) + (allocation (inherit assignment) + (next-id (next id)) + (ids taken))) + id))))) + +(define* (reserve-ids allocation ids #:key (skip? #t)) + "Mark the numbers listed in IDS as reserved in ALLOCATION. When SKIP? is +true, start allocation after the highest (or lowest, depending on whether it's +a system ID allocation) number among IDS." + (%allocation + (inherit allocation) + (next-id (if skip? + (+ (reduce max + (- (allocation-next-id allocation) 1) + (filter user-id? ids)) + 1) + (allocation-next-id allocation))) + (next-system-id + (if skip? + (- (reduce min + (+ 1 (allocation-next-system-id allocation)) + (filter system-id? ids)) + 1) + (allocation-next-system-id allocation))) + (ids (fold (cut vhash-consv <> #t <>) + (allocation-ids allocation) + ids)))) + +(define (allocated? allocation id) + "Return true if ID is already allocated as part of ALLOCATION." + (->bool (vhash-assv id (allocation-ids allocation)))) + +(define (lookup-procedure lst key) + "Return a lookup procedure for the elements of LST, calling KEY to obtain +the key of each element." + (let ((table (fold (lambda (obj table) + (vhash-cons (key obj) obj table)) + vlist-null + lst))) + (lambda (key) + (match (vhash-assoc key table) + (#f #f) + ((_ . value) value))))) + +(define* (allocate-groups groups members + #:optional (current-groups '())) + "Return a list of group entries for GROUPS, a list of . Members +for each group are taken from MEMBERS, a vhash that maps group names to member +names. GIDs and passwords found in CURRENT-GROUPS, a list of group entries, +are reused." + (define gids + ;; Mark all the currently-used GIDs and the explicitly requested GIDs as + ;; reserved. + (reserve-ids (reserve-ids (allocation) + (map group-entry-gid current-groups)) + (filter-map user-group-id groups) + #:skip? #f)) + + (define previous-entry + (lookup-procedure current-groups group-entry-name)) + + (reverse + (fold2 (lambda (group result allocation) + (let ((name (user-group-name group)) + (password (user-group-password group)) + (requested-id (user-group-id group)) + (system? (user-group-system? group))) + (let*-values (((previous) + (previous-entry name)) + ((allocation id) + (cond + ((number? requested-id) + (values (reserve-ids allocation + (list requested-id)) + requested-id)) + (previous + (values allocation + (group-entry-gid previous))) + (else + (allocate-id allocation + #:system? system?))))) + (values (cons (group-entry + (name name) + (password + (if previous + (group-entry-password previous) + password)) + (gid id) + (members (vhash-fold* cons '() name members))) + result) + allocation)))) + '() + gids + groups))) + +(define* (allocate-passwd users groups #:optional (current-passwd '())) + "Return a list of password entries for USERS, a list of . +Take GIDs from GROUPS, a list of group entries. Reuse UIDs from +CURRENT-PASSWD, a list of password entries, when possible; otherwise allocate +new UIDs." + (define uids + (reserve-ids (reserve-ids (allocation) + (map password-entry-uid current-passwd)) + (filter-map user-account-uid users) + #:skip? #f)) + + (define previous-entry + (lookup-procedure current-passwd password-entry-name)) + + (define (group-id name) + (or (any (lambda (entry) + (and (string=? (group-entry-name entry) name) + (group-entry-gid entry))) + groups) + (error "group not found" name))) + + (reverse + (fold2 (lambda (user result allocation) + (let ((name (user-account-name user)) + (requested-id (user-account-uid user)) + (group (user-account-group user)) + (real-name (user-account-comment user)) + (directory (user-account-home-directory user)) + (shell (user-account-shell user)) + (system? (user-account-system? user))) + (let*-values (((previous) + (previous-entry name)) + ((allocation id) + (cond + ((number? requested-id) + (values (reserve-ids allocation + (list requested-id)) + requested-id)) + (previous + (values allocation + (password-entry-uid previous))) + (else + (allocate-id allocation + #:system? system?))))) + (values (cons (password-entry + (name name) + (uid id) + (directory directory) + (gid (if (number? group) group (group-id group))) + (real-name (if previous + (password-entry-real-name previous) + real-name)) + (shell (if previous + (password-entry-shell previous) + shell))) + result) + allocation)))) + '() + uids + users))) + +(define* (days-since-epoch #:optional (current-time current-time)) + "Return the number of days elapsed since the 1st of January, 1970." + (let* ((now (current-time time-utc)) + (epoch (make-time time-utc 0 0)) + (diff (time-difference now epoch))) + (quotient (time-second diff) (* 24 3600)))) + +(define* (passwd->shadow users passwd #:optional (current-shadow '()) + #:key (current-time current-time)) + "Return a list of shadow entries for the password entries listed in PASSWD. +Reuse shadow entries from CURRENT-SHADOW when they exist, and take the initial +password from USERS." + (define previous-entry + (lookup-procedure current-shadow shadow-entry-name)) + + (define now + (days-since-epoch current-time)) + + (map (lambda (user passwd) + (or (previous-entry (password-entry-name passwd)) + (shadow-entry (name (password-entry-name passwd)) + (password (user-account-password user)) + (last-change now)))) + users passwd)) + +(define (empty-if-not-found thunk) + "Call THUNK and return the empty list if that throws to ENOENT." + (catch 'system-error + thunk + (lambda args + (if (= ENOENT (system-error-errno args)) + '() + (apply throw args))))) + +(define* (user+group-databases users groups + #:key + (current-passwd + (empty-if-not-found read-passwd)) + (current-groups + (empty-if-not-found read-group)) + (current-shadow + (empty-if-not-found read-shadow)) + (current-time current-time)) + "Return three values: the list of group entries, the list of password +entries, and the list of shadow entries corresponding to USERS and GROUPS. +Preserve stateful bits from CURRENT-PASSWD, CURRENT-GROUPS, and +CURRENT-SHADOW: UIDs, GIDs, passwords, user shells, etc." + (define members + ;; Map group name to user names. + (fold (lambda (user members) + (fold (cute vhash-cons <> (user-account-name user) <>) + members + (user-account-supplementary-groups user))) + vlist-null + users)) + + (define group-entries + (allocate-groups groups members current-groups)) + + (define passwd-entries + (allocate-passwd users group-entries current-passwd)) + + (define shadow-entries + (passwd->shadow users passwd-entries current-shadow + #:current-time current-time)) + + (values group-entries passwd-entries shadow-entries)) diff --git a/gnu/local.mk b/gnu/local.mk index d6d9209830..2971f3f87b 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -545,6 +545,7 @@ GNU_SYSTEM_MODULES = \ %D%/system/uuid.scm \ %D%/system/vm.scm \ \ + %D%/build/accounts.scm \ %D%/build/activation.scm \ %D%/build/bootloader.scm \ %D%/build/cross-toolchain.scm \ diff --git a/tests/accounts.scm b/tests/accounts.scm new file mode 100644 index 0000000000..127861042d --- /dev/null +++ b/tests/accounts.scm @@ -0,0 +1,309 @@ +;;; GNU Guix --- Functional package management for GNU +;;; Copyright © 2019 Ludovic Courtès +;;; +;;; This file is part of GNU Guix. +;;; +;;; GNU Guix is free software; you can redistribute it and/or modify it +;;; under the terms of the GNU General Public License as published by +;;; the Free Software Foundation; either version 3 of the License, or (at +;;; your option) any later version. +;;; +;;; GNU Guix is distributed in the hope that it will be useful, but +;;; WITHOUT ANY WARRANTY; without even the implied warranty of +;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;;; GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with GNU Guix. If not, see . + +(define-module (test-accounts) + #:use-module (gnu build accounts) + #:use-module (gnu system accounts) + #:use-module (srfi srfi-19) + #:use-module (srfi srfi-64) + #:use-module (ice-9 vlist) + #:use-module (ice-9 match)) + +(define %passwd-sample + "\ +root:x:0:0:Admin:/root:/bin/sh +charlie:x:1000:998:Charlie:/home/charlie:/bin/sh\n") + +(define %group-sample + "\ +root:x:0: +wheel:x:999:alice,bob +hackers:x:65000:alice,charlie\n") + +(define %shadow-sample + (string-append "\ +root:" (crypt "secret" "$6$abc") ":17169:::::: +charlie:" (crypt "hey!" "$6$abc") ":17169:::::: +nobody:!:0::::::\n")) + + +(test-begin "accounts") + +(test-equal "write-passwd" + %passwd-sample + (call-with-output-string + (lambda (port) + (write-passwd (list (password-entry + (name "root") + (uid 0) (gid 0) + (real-name "Admin") + (directory "/root") + (shell "/bin/sh")) + (password-entry + (name "charlie") + (uid 1000) (gid 998) + (real-name "Charlie") + (directory "/home/charlie") + (shell "/bin/sh"))) + port)))) + +(test-equal "read-passwd + write-passwd" + %passwd-sample + (call-with-output-string + (lambda (port) + (write-passwd (call-with-input-string %passwd-sample + read-passwd) + port)))) + +(test-equal "write-group" + %group-sample + (call-with-output-string + (lambda (port) + (write-group (list (group-entry + (name "root") (gid 0)) + (group-entry + (name "wheel") (gid 999) + (members '("alice" "bob"))) + (group-entry + (name "hackers") (gid 65000) + (members '("alice" "charlie")))) + port)))) + +(test-equal "read-group + write-group" + %group-sample + (call-with-output-string + (lambda (port) + (write-group (call-with-input-string %group-sample + read-group) + port)))) + +(test-equal "write-shadow" + %shadow-sample + (call-with-output-string + (lambda (port) + (write-shadow (list (shadow-entry + (name "root") + (password (crypt "secret" "$6$abc")) + (last-change 17169)) + (shadow-entry + (name "charlie") + (password (crypt "hey!" "$6$abc")) + (last-change 17169)) + (shadow-entry + (name "nobody"))) + port)))) + +(test-equal "read-shadow + write-shadow" + %shadow-sample + (call-with-output-string + (lambda (port) + (write-shadow (call-with-input-string %shadow-sample + read-shadow) + port)))) + + +(define allocate-groups (@@ (gnu build accounts) allocate-groups)) +(define allocate-passwd (@@ (gnu build accounts) allocate-passwd)) + +(test-equal "allocate-groups" + ;; Allocate GIDs in a stateless fashion. + (list (group-entry (name "s") (gid %system-id-max)) + (group-entry (name "x") (gid 900)) + (group-entry (name "t") (gid 899)) + (group-entry (name "a") (gid %id-min) (password "foo") + (members '("alice" "bob"))) + (group-entry (name "b") (gid (+ %id-min 1)) + (members '("charlie")))) + (allocate-groups (list (user-group (name "s") (system? #t)) + (user-group (name "x") (id 900)) + (user-group (name "t") (system? #t)) + (user-group (name "a") (password "foo")) + (user-group (name "b"))) + (alist->vhash `(("a" . "bob") + ("a" . "alice") + ("b" . "charlie"))))) + +(test-equal "allocate-groups with requested GIDs" + ;; Make sure the requested GID for "b" is honored. + (list (group-entry (name "a") (gid (+ 1 %id-min))) + (group-entry (name "b") (gid %id-min)) + (group-entry (name "c") (gid (+ 2 %id-min)))) + (allocate-groups (list (user-group (name "a")) + (user-group (name "b") (id %id-min)) + (user-group (name "c"))) + vlist-null)) + +(test-equal "allocate-groups with previous state" + ;; Make sure bits of state are preserved: password, GID, no reuse of + ;; previously-used GIDs. + (list (group-entry (name "s") (gid (- %system-id-max 1))) + (group-entry (name "t") (gid (- %system-id-max 2))) + (group-entry (name "a") (gid 30000) (password #f) + (members '("alice" "bob"))) + (group-entry (name "b") (gid 30001) (password "bar") + (members '("charlie")))) + (allocate-groups (list (user-group (name "s") (system? #t)) + (user-group (name "t") (system? #t)) + (user-group (name "a") (password "foo")) + (user-group (name "b"))) + (alist->vhash `(("a" . "bob") + ("a" . "alice") + ("b" . "charlie"))) + (list (group-entry (name "a") (gid 30000)) + (group-entry (name "b") (gid 30001) + (password "bar")) + (group-entry (name "removed") + (gid %system-id-max))))) + +(test-equal "allocate-groups with previous state, looping" + ;; Check that allocation starts after the highest previously-used GID, and + ;; loops back to the lowest GID. + (list (group-entry (name "a") (gid (- %id-max 1))) + (group-entry (name "b") (gid %id-min)) + (group-entry (name "c") (gid (+ 1 %id-min)))) + (allocate-groups (list (user-group (name "a")) + (user-group (name "b")) + (user-group (name "c"))) + vlist-null + (list (group-entry (name "d") + (gid (- %id-max 2)))))) + +(test-equal "allocate-passwd" + ;; Allocate UIDs in a stateless fashion. + (list (password-entry (name "alice") (uid %id-min) (gid 1000) + (real-name "Alice") (shell "/bin/sh") + (directory "/home/alice")) + (password-entry (name "bob") (uid (+ 1 %id-min)) (gid 1001) + (real-name "Bob") (shell "/bin/gash") + (directory "/home/bob")) + (password-entry (name "sshd") (uid %system-id-max) (gid 500) + (real-name "sshd") (shell "/nologin") + (directory "/var/empty")) + (password-entry (name "guix") (uid 30000) (gid 499) + (real-name "Guix") (shell "/nologin") + (directory "/var/empty"))) + (allocate-passwd (list (user-account (name "alice") + (comment "Alice") + (home-directory "/home/alice") + (shell "/bin/sh") + (group "users")) + (user-account (name "bob") + (comment "Bob") + (home-directory "/home/bob") + (shell "/bin/gash") + (group "wheel")) + (user-account (name "sshd") (system? #t) + (comment "sshd") + (home-directory "/var/empty") + (shell "/nologin") + (group "sshd")) + (user-account (name "guix") (system? #t) + (comment "Guix") + (home-directory "/var/empty") + (shell "/nologin") + (group "guix") + (uid 30000))) + (list (group-entry (name "users") (gid 1000)) + (group-entry (name "wheel") (gid 1001)) + (group-entry (name "sshd") (gid 500)) + (group-entry (name "guix") (gid 499))))) + +(test-equal "allocate-passwd with previous state" + ;; Make sure bits of state are preserved: UID, no reuse of previously-used + ;; UIDs, and shell. + (list (password-entry (name "alice") (uid 1234) (gid 1000) + (real-name "Alice Smith") (shell "/gnu/.../bin/gash") + (directory "/home/alice")) + (password-entry (name "charlie") (uid 1236) (gid 1000) + (real-name "Charlie") (shell "/bin/sh") + (directory "/home/charlie"))) + (allocate-passwd (list (user-account (name "alice") + (comment "Alice") + (home-directory "/home/alice") + (shell "/bin/sh") ;ignored + (group "users")) + (user-account (name "charlie") + (comment "Charlie") + (home-directory "/home/charlie") + (shell "/bin/sh") + (group "users"))) + (list (group-entry (name "users") (gid 1000))) + (list (password-entry (name "alice") (uid 1234) (gid 9999) + (real-name "Alice Smith") + (shell "/gnu/.../bin/gash") + (directory "/home/alice")) + (password-entry (name "bob") (uid 1235) (gid 1001) + (real-name "Bob") (shell "/bin/sh") + (directory "/home/bob"))))) + +(test-equal "user+group-databases" + ;; The whole shebang. + (list (list (group-entry (name "a") (gid %id-min) + (members '("bob"))) + (group-entry (name "b") (gid (+ 1 %id-min)) + (members '("alice"))) + (group-entry (name "s") (gid %system-id-max))) + (list (password-entry (name "alice") (real-name "Alice") + (uid %id-min) (gid %id-min) + (directory "/a")) + (password-entry (name "bob") (real-name "Bob") + (uid (+ 1 %id-min)) (gid (+ 1 %id-min)) + (directory "/b")) + (password-entry (name "nobody") + (uid 65534) (gid %system-id-max) + (directory "/var/empty"))) + (list (shadow-entry (name "alice") (last-change 100) + (password (crypt "initial pass" "$6$"))) + (shadow-entry (name "bob") (last-change 50) + (password (crypt "foo" "$6$"))) + (shadow-entry (name "nobody") (last-change 100)))) + (call-with-values + (lambda () + (user+group-databases (list (user-account + (name "alice") + (comment "Alice") + (home-directory "/a") + (group "a") + (supplementary-groups '("b")) + (password (crypt "initial pass" "$6$"))) + (user-account + (name "bob") + (comment "Bob") + (home-directory "/b") + (group "b") + (supplementary-groups '("a"))) + (user-account + (name "nobody") + (group "s") + (uid 65534) + (home-directory "/var/empty"))) + (list (user-group (name "a")) + (user-group (name "b")) + (user-group (name "s") (system? #t))) + #:current-passwd '() + #:current-shadow + (list (shadow-entry (name "bob") + (password (crypt "foo" "$6$")) + (last-change 50))) + #:current-groups '() + #:current-time + (lambda (type) + (make-time type 0 (* 24 3600 100))))) + list)) + +(test-end "accounts") From 0ae735bcc8ff7fdc89d67b492bdee9091ee19e86 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ludovic=20Court=C3=A8s?= Date: Sun, 3 Mar 2019 23:16:41 +0100 Subject: [PATCH 053/194] activation: Build account databases with (gnu build accounts). * gnu/build/activation.scm (enumerate, current-users, current-groups) (add-group, add-user, modify-user, ensure-user): Remove. (activate-users+groups)[touch, activate-user]: Remove. [make-home-directory]: New procedure. Rewrite in terms of 'user+group-databases', 'write-group', etc. * gnu/build/install.scm (directives): Remove "/root". * gnu/system/shadow.scm (account-activation): Remove (setenv "PATH" ...) expression, which is now unneeded. --- gnu/build/activation.scm | 207 ++++----------------------------------- gnu/build/install.scm | 3 +- gnu/system/shadow.scm | 2 - 3 files changed, 21 insertions(+), 191 deletions(-) diff --git a/gnu/build/activation.scm b/gnu/build/activation.scm index e777015980..f24e6029fa 100644 --- a/gnu/build/activation.scm +++ b/gnu/build/activation.scm @@ -19,11 +19,13 @@ (define-module (gnu build activation) #:use-module (gnu system accounts) + #:use-module (gnu build accounts) #:use-module (gnu build linux-boot) #:use-module (guix build utils) #:use-module (ice-9 ftw) #:use-module (ice-9 match) #:use-module (srfi srfi-1) + #:use-module (srfi srfi-11) #:use-module (srfi srfi-26) #:export (activate-users+groups activate-user-home @@ -43,35 +45,6 @@ ;;; ;;; Code: -(define (enumerate thunk) - "Return the list of values returned by THUNK until it returned #f." - (let loop ((entry (thunk)) - (result '())) - (if (not entry) - (reverse result) - (loop (thunk) (cons entry result))))) - -(define (current-users) - "Return the passwd entries for all the currently defined user accounts." - (setpw) - (enumerate getpwent)) - -(define (current-groups) - "Return the group entries for all the currently defined user groups." - (setgr) - (enumerate getgrent)) - -(define* (add-group name #:key gid password system? - (log-port (current-error-port))) - "Add NAME as a user group, with the given numeric GID if specified." - ;; Use 'groupadd' from the Shadow package. - (format log-port "adding group '~a'...~%" name) - (let ((args `(,@(if gid `("-g" ,(number->string gid)) '()) - ,@(if password `("-p" ,password) '()) - ,@(if system? `("--system") '()) - ,name))) - (zero? (apply system* "groupadd" args)))) - (define %skeleton-directory ;; Directory containing skeleton files for new accounts. ;; Note: keep the trailing '/' so that 'scandir' enters it. @@ -117,172 +90,32 @@ owner-writable in HOME." (make-file-writable target)))) files))) -(define* (add-user name group - #:key uid comment home create-home? - shell password system? - (supplementary-groups '()) - (log-port (current-error-port))) - "Create an account for user NAME part of GROUP, with the specified -properties. Return #t on success." - (format log-port "adding user '~a'...~%" name) - - (if (and uid (zero? uid)) - - ;; 'useradd' fails with "Cannot determine your user name" if the root - ;; account doesn't exist. Thus, for bootstrapping purposes, create that - ;; one manually. - (let ((home (or home "/root"))) - (call-with-output-file "/etc/shadow" - (cut format <> "~a::::::::~%" name)) - (call-with-output-file "/etc/passwd" - (cut format <> "~a:x:~a:~a:~a:~a:~a~%" - name "0" "0" comment home shell)) - (chmod "/etc/shadow" #o600) - (copy-account-skeletons home) - (chmod home #o700) - #t) - - ;; Use 'useradd' from the Shadow package. - (let ((args `(,@(if uid `("-u" ,(number->string uid)) '()) - "-g" ,(if (number? group) (number->string group) group) - ,@(if (pair? supplementary-groups) - `("-G" ,(string-join supplementary-groups ",")) - '()) - ,@(if comment `("-c" ,comment) '()) - ,@(if home `("-d" ,home) '()) - - ;; Home directories of non-system accounts are created by - ;; 'activate-user-home'. - ,@(if (and home create-home? system? - (not (file-exists? home))) - '("--create-home") - '()) - - ,@(if shell `("-s" ,shell) '()) - ,@(if password `("-p" ,password) '()) - ,@(if system? '("--system") '()) - ,name))) - (and (zero? (apply system* "useradd" args)) - (begin - ;; Since /etc/skel is a link to a directory in the store where - ;; all files have the writable bit cleared, and since 'useradd' - ;; preserves permissions when it copies them, explicitly make - ;; them writable. - (make-skeletons-writable home) - #t))))) - -(define* (modify-user name group - #:key uid comment home create-home? - shell password system? - (supplementary-groups '()) - (log-port (current-error-port))) - "Modify user account NAME to have all the given settings." - ;; Use 'usermod' from the Shadow package. - (let ((args `(,@(if uid `("-u" ,(number->string uid)) '()) - "-g" ,(if (number? group) (number->string group) group) - ,@(if (pair? supplementary-groups) - `("-G" ,(string-join supplementary-groups ",")) - '()) - ,@(if comment `("-c" ,comment) '()) - ;; Don't use '--move-home'. - ,@(if home `("-d" ,home) '()) - ,@(if shell `("-s" ,shell) '()) - ,name))) - (zero? (apply system* "usermod" args)))) - -(define* (delete-user name #:key (log-port (current-error-port))) - "Remove user account NAME. Return #t on success. This may fail if NAME is -logged in." - (format log-port "deleting user '~a'...~%" name) - (zero? (system* "userdel" name))) - -(define* (delete-group name #:key (log-port (current-error-port))) - "Remove group NAME. Return #t on success." - (format log-port "deleting group '~a'...~%" name) - (zero? (system* "groupdel" name))) - -(define* (ensure-user name group - #:key uid comment home create-home? - shell password system? - (supplementary-groups '()) - (log-port (current-error-port)) - #:rest rest) - "Make sure user NAME exists and has the relevant settings." - (if (false-if-exception (getpwnam name)) - (apply modify-user name group rest) - (apply add-user name group rest))) - (define (activate-users+groups users groups) "Make sure USERS (a list of user account records) and GROUPS (a list of user group records) are all available." - (define (touch file) - (close-port (open-file file "a0b"))) - - (define activate-user - (lambda (user) - (let ((name (user-account-name user)) - (uid (user-account-uid user)) - (group (user-account-group user)) - (supplementary-groups - (user-account-supplementary-groups user)) - (comment (user-account-comment user)) - (home (user-account-home-directory user)) - (create-home? (user-account-create-home-directory? user)) - (shell (user-account-shell user)) - (password (user-account-password user)) - (system? (user-account-system? user))) - (let ((profile-dir (string-append "/var/guix/profiles/per-user/" - name))) - (ensure-user name group - #:uid uid - #:system? system? - #:supplementary-groups supplementary-groups - #:comment comment - #:home home - #:create-home? create-home? - - #:shell shell - #:password password) - - (unless system? - ;; Create the profile directory for the new account. - (let ((pw (getpwnam name))) - (mkdir-p profile-dir) - (chown profile-dir (passwd:uid pw) (passwd:gid pw)))))))) - - ;; 'groupadd' aborts if the file doesn't already exist. - (touch "/etc/group") + (define (make-home-directory user) + (let ((home (user-account-home-directory user)) + (pwd (getpwnam (user-account-name user)))) + (mkdir-p home) + (chown home (passwd:uid pwd) (passwd:gid pwd)) + (chmod home #o700))) ;; Allow home directories to be created under /var/lib. (mkdir-p "/var/lib") - ;; Create the root account so we can use 'useradd' and 'groupadd'. - (activate-user (find (compose zero? user-account-uid) users)) + (let-values (((groups passwd shadow) + (user+group-databases users groups))) + (write-group groups) + (write-passwd passwd) + (write-shadow shadow) - ;; Then create the groups. - (for-each (lambda (group) - (let ((name (user-group-name group)) - (password (user-group-password group)) - (gid (user-group-id group)) - (system? (user-group-system? group))) - (unless (false-if-exception (getgrnam name)) - (add-group name - #:gid gid #:password password - #:system? system?)))) - groups) - - ;; Create the other user accounts. - (for-each activate-user users) - - ;; Finally, delete extra user accounts and groups. - (for-each delete-user - (lset-difference string=? - (map passwd:name (current-users)) - (map user-account-name users))) - (for-each delete-group - (lset-difference string=? - (map group:name (current-groups)) - (map user-group-name groups)))) + ;; Home directories of non-system accounts are created by + ;; 'activate-user-home'. + (for-each make-home-directory + (filter (lambda (user) + (and (user-account-system? user) + (user-account-create-home-directory? user))) + users)))) (define (activate-user-home users) "Create and populate the home directory of USERS, a list of tuples, unless diff --git a/gnu/build/install.scm b/gnu/build/install.scm index c9ebe124fe..c0d4d44091 100644 --- a/gnu/build/install.scm +++ b/gnu/build/install.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018 Ludovic Courtès +;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès ;;; Copyright © 2016 Chris Marusich ;;; ;;; This file is part of GNU Guix. @@ -117,7 +117,6 @@ STORE." (directory "/var/tmp" 0 0 #o1777) (directory "/var/lock" 0 0 #o1777) - (directory "/root" 0 0) ; an exception (directory "/home" 0 0))) (define (populate-root-file-system system target) diff --git a/gnu/system/shadow.scm b/gnu/system/shadow.scm index 4e5b6ae5f2..7dc36f4a45 100644 --- a/gnu/system/shadow.scm +++ b/gnu/system/shadow.scm @@ -302,8 +302,6 @@ group." #~(begin (use-modules (gnu system accounts)) - (setenv "PATH" - (string-append #$(@ (gnu packages admin) shadow) "/sbin")) (activate-users+groups (map sexp->user-account (list #$@user-specs)) (map sexp->user-group (list #$@group-specs)))))) From 0ef54303f35e559d18c679abd4b7a0a5aebff774 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Thu, 7 Mar 2019 21:43:46 +0200 Subject: [PATCH 054/194] gnu: c-graph: Update to 2.0.1. * gnu/packages/maths.scm (c-graph): Update to 2.0.1. --- gnu/packages/maths.scm | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 0eee39f760..33c1416c75 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -8,7 +8,7 @@ ;;; Copyright © 2015, 2016, 2017, 2018, 2019 Ricardo Wurmus ;;; Copyright © 2015 Sou Bunnbu ;;; Copyright © 2015 Mark H Weaver -;;; Copyright © 2015, 2016, 2017, 2018 Efraim Flashner +;;; Copyright © 2015, 2016, 2017, 2018, 2019 Efraim Flashner ;;; Copyright © 2015 Fabian Harfert ;;; Copyright © 2016 Roel Janssen ;;; Copyright © 2016, 2018 Kei Kebreau @@ -148,19 +148,19 @@ beginners.") (define-public c-graph (package (name "c-graph") - (version "2.0") + (version "2.0.1") (source (origin (method url-fetch) (uri (string-append "mirror://gnu/c-graph/c-graph-" version ".tar.gz")) (sha256 (base32 - "1hlvpzrh7hzzf533diyfiabzskddi8zx92av9hwkjw3l46z7qv01")))) + "092412jzxy6wdvpk96pfj499hpmaww8xllavbvlqspfpr7ips9id")))) (build-system gnu-build-system) (inputs - `(("fortran" ,gfortran))) + `(("fortran" ,gfortran))) (synopsis "Visualizing and demonstrating convolution") (description - "GNU C-Graph is a tool for demonstrating the theory of convolution. + "GNU C-Graph is a tool for demonstrating the theory of convolution. Thus, it can serve as an excellent aid to students of signal and systems theory in visualizing the convolution process. Rather than forcing the student to write code, the program offers an intuitive interface with From c4bfce994e0622a921af2ebd996be14ceb492c11 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Thu, 7 Mar 2019 21:58:39 +0200 Subject: [PATCH 055/194] gnu: libmicrohttpd: Update to 0.9.63. * gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.63. [arguments]: Remove custom phase to add missing LDFLAGS. --- gnu/packages/gnunet.scm | 16 +++------------- 1 file changed, 3 insertions(+), 13 deletions(-) diff --git a/gnu/packages/gnunet.scm b/gnu/packages/gnunet.scm index 685cbdedec..f02bad8166 100644 --- a/gnu/packages/gnunet.scm +++ b/gnu/packages/gnunet.scm @@ -148,14 +148,14 @@ tool to extract metadata from a file and print the results.") (define-public libmicrohttpd (package (name "libmicrohttpd") - (version "0.9.62") + (version "0.9.63") (source (origin (method url-fetch) (uri (string-append "mirror://gnu/libmicrohttpd/libmicrohttpd-" version ".tar.gz")) (sha256 (base32 - "0jfvi1fb4im3a3m8qishbmzx3zch993c0mhvl2k92l1zf1yhjgmx")))) + "173lj66crwvhzwp1r812sc5h1hda7g6lb9l1y5zf7w3pw4dnzhrp")))) (build-system gnu-build-system) (inputs `(("curl" ,curl) @@ -164,17 +164,7 @@ tool to extract metadata from a file and print the results.") ("openssl" ,openssl) ("zlib" ,zlib))) (arguments - `(#:parallel-tests? #f - #:phases (modify-phases %standard-phases - (add-before 'check 'add-missing-LDFLAGS - (lambda _ - ;; The two test_upgrade* programs depend on GnuTLS - ;; directly but lack -lgnutls; add it. - (substitute* "src/microhttpd/Makefile" - (("^test_upgrade(.*)LDFLAGS = (.*)$" _ first rest) - (string-append "test_upgrade" first - "LDFLAGS = -lgnutls " rest))) - #t))))) + `(#:parallel-tests? #f)) (synopsis "C library implementing an HTTP 1.1 server") (description "GNU libmicrohttpd is a small, embeddable HTTP server implemented as a From dcf4d01f30b6ce6efa98664a926712ced4516a01 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Thu, 7 Mar 2019 21:59:17 +0200 Subject: [PATCH 056/194] gnu: libmicrohttpd: Enable parallel tests. * gnu/packages/gnunet.scm (libmicrohttpd)[arguments]: Don't disable parallel tests. --- gnu/packages/gnunet.scm | 2 -- 1 file changed, 2 deletions(-) diff --git a/gnu/packages/gnunet.scm b/gnu/packages/gnunet.scm index f02bad8166..461180161e 100644 --- a/gnu/packages/gnunet.scm +++ b/gnu/packages/gnunet.scm @@ -163,8 +163,6 @@ tool to extract metadata from a file and print the results.") ("libgcrypt" ,libgcrypt) ("openssl" ,openssl) ("zlib" ,zlib))) - (arguments - `(#:parallel-tests? #f)) (synopsis "C library implementing an HTTP 1.1 server") (description "GNU libmicrohttpd is a small, embeddable HTTP server implemented as a From 945723be973975c91d314dc273b0ca521130180b Mon Sep 17 00:00:00 2001 From: Julien Lepiller Date: Thu, 7 Mar 2019 19:59:59 +0100 Subject: [PATCH 057/194] gnu: php: Update to 7.3.3. * gnu/packages/php.scm (php): Update to 7.3.3. --- gnu/packages/php.scm | 11 +++++++++-- 1 file changed, 9 insertions(+), 2 deletions(-) diff --git a/gnu/packages/php.scm b/gnu/packages/php.scm index eba11943b0..8d96e54c90 100644 --- a/gnu/packages/php.scm +++ b/gnu/packages/php.scm @@ -58,7 +58,7 @@ (define-public php (package (name "php") - (version "7.3.1") + (version "7.3.3") (home-page "https://secure.php.net/") (source (origin (method url-fetch) @@ -66,7 +66,7 @@ name "-" version ".tar.xz")) (sha256 (base32 - "0qikydmjg8k68l56azq4vg3gkynqwlpzayd5qi9wsl03pr03xsfg")) + "1cxrpaz5cvx1qq9klwgvcyvcly865sxpn4bdk82wpl43l5wkxc3b")) (modules '((guix build utils))) (snippet '(with-directory-excursion "ext" @@ -234,6 +234,13 @@ "ext/gd/tests/xpm2gd.phpt" "ext/gd/tests/xpm2jpg.phpt" "ext/gd/tests/xpm2png.phpt" + ;; Whitespace difference, probably caused by a very + ;; long store path + "ext/gd/tests/bug77479.phpt" + ;; Slightly different result (NULL instead of false), + ;; but the bug report suggests the issue was in + ;; the bundled gd, not upstream. + "ext/gd/tests/bug77272.phpt" ;; XXX: These iconv tests have the expected outcome, ;; but with different error messages. From d748cb5f473960141f49dad06bfc98d6c46ee326 Mon Sep 17 00:00:00 2001 From: Pierre Neidhardt Date: Thu, 7 Mar 2019 22:23:01 +0100 Subject: [PATCH 058/194] gnu: Add autorandr. * gnu/packages/xdisorg.scm (autorandr): New variable. --- gnu/packages/xdisorg.scm | 57 +++++++++++++++++++++++++++++++++++++++- 1 file changed, 56 insertions(+), 1 deletion(-) diff --git a/gnu/packages/xdisorg.scm b/gnu/packages/xdisorg.scm index f0d6ac3eb5..e18d7e9719 100644 --- a/gnu/packages/xdisorg.scm +++ b/gnu/packages/xdisorg.scm @@ -23,7 +23,7 @@ ;;; Copyright © 2017 Mike Gerwitz ;;; Copyright © 2018 Thomas Sigurdsen ;;; Copyright © 2018, 2019 Rutger Helling -;;; Copyright © 2018 Pierre Neidhardt +;;; Copyright © 2018, 2019 Pierre Neidhardt ;;; Copyright © 2018 Nam Nguyen ;;; ;;; This file is part of GNU Guix. @@ -69,6 +69,7 @@ #:use-module (gnu packages glib) #:use-module (gnu packages gnome) #:use-module (gnu packages icu4c) + #:use-module (gnu packages man) #:use-module (gnu packages maths) #:use-module (gnu packages m4) #:use-module (gnu packages ncurses) @@ -132,6 +133,60 @@ are saved as executable shell scripts which can be loaded without using this program.") (license license:gpl3+))) +(define-public autorandr + ;; Use latest commit since 1.7 lacks many new features such as the + ;; autorandr_launcher. + (let ((commit "b484c0ea9c9a4838278bbd661a7cc384333c1df8")) + (package + (name "autorandr") + (version (git-version "1.7" "1" commit)) + (home-page "https://github.com/phillipberndt/autorandr") + (source + (origin + (method git-fetch) + (uri (git-reference + (url home-page) + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0da17kzsisjv3s993j5idkk1n2d2cvjdn7pngs2b0ic1r2h5z02h")))) + (build-system python-build-system) + (native-inputs + `(("man-db" ,man-db))) + (inputs + `(("xrandr" ,xrandr) + ("libxcb" ,libxcb))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'build 'configure + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "autorandr.py" + (("popen\\(\"xrandr") (string-append "popen(\"" + (assoc-ref inputs "xrandr") + "/bin/xrandr")) + (("\\[\"xrandr") (string-append "[\"" + (assoc-ref inputs "xrandr") + "/bin/xrandr"))) + #t)) + (add-after 'install 'install-contrib + (lambda* (#:key outputs #:allow-other-keys) + (invoke "make" + (string-append "DESTDIR=" (assoc-ref outputs "out")) + "PREFIX=" + "BASH_COMPLETIONS_DIR=etc/bash_completiond.d" + "install_manpage" + "install_bash_completion" + "install_launcher")))))) + (synopsis "Auto-detect connected displays and load appropiate setup") + (description "Autorandr wraps around xrandr to help with X11 +multi-screen configuration management. It allows the user to create profiles +for various multi-screen setups. Autorandr automatically detects the profiles +that can be activated based on the connected hardware. Hook scripts can be +used to further tweak the behaviour of the different profiles.") + (license license:gpl3+)))) + (define-public xclip (package (name "xclip") From 3f22a115bd792af0ce8cee9f0723c5f5fada0b2d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 22:05:03 +0100 Subject: [PATCH 059/194] gnu: Add r-ellipsis. * gnu/packages/cran.scm (r-ellipsis): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index cc23c53f4c..cb7689ecdb 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -84,6 +84,28 @@ the system clipboards.") (license license:gpl3))) +(define-public r-ellipsis + (package + (name "r-ellipsis") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "ellipsis" version)) + (sha256 + (base32 + "0pw94qpg81xmsdsagpqxddv7m2cmdszmyyq99dk3caqqj01z7wg6")))) + (build-system r-build-system) + (home-page "https://github.com/hadley/ellipsis") + (synopsis "Tools for working with additional arguments") + (description + "In S3 generics, it's useful to take @code{...} so that methods can have +additional arguments. But this flexibility comes at a cost: misspelled +arguments will be silently ignored. The @code{ellipsis} package is an +experiment that allows a generic to warn if any arguments passed in @code{...} +are not used.") + (license license:gpl3))) + (define-public r-sys (package (name "r-sys") From dab3e92c94ef86bd4eaf1c3f52f7ffdedcc7bd4f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 22:09:04 +0100 Subject: [PATCH 060/194] gnu: Add r-magick. * gnu/packages/cran.scm (r-magick): New variable. --- gnu/packages/cran.scm | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index cb7689ecdb..b3378322d1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -51,6 +51,7 @@ #:use-module (gnu packages gtk) #:use-module (gnu packages haskell) #:use-module (gnu packages image) + #:use-module (gnu packages imagemagick) #:use-module (gnu packages javascript) #:use-module (gnu packages lisp) #:use-module (gnu packages machine-learning) @@ -7132,6 +7133,39 @@ replicating the evaluation as many times as specified, and returning the results conveniently wrapped into a data frame.") (license license:gpl2+))) +(define-public r-magick + (package + (name "r-magick") + (version "2.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "magick" version)) + (sha256 + (base32 + "18y465325mhf48x2jn3jz9khwq1z2aj13wfbdkv8k3hln1sd572m")))) + (build-system r-build-system) + (inputs + `(("imagemagick" ,imagemagick) + ("zlib" ,zlib))) + (propagated-inputs + `(("r-curl" ,r-curl) + ("r-magrittr" ,r-magrittr) + ("r-rcpp" ,r-rcpp))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (home-page "https://github.com/ropensci/magick") + (synopsis "Advanced graphics and image-processing in R") + (description + "This package provides bindings to ImageMagick, a comprehensive image +processing library. It supports many common formats (PNG, JPEG, TIFF, PDF, +etc.) and manipulations (rotate, scale, crop, trim, flip, blur, etc). All +operations are vectorized via the Magick++ STL meaning they operate either on +a single frame or a series of frames for working with layers, collages, or +animation. In RStudio, images are automatically previewed when printed to the +console, resulting in an interactive editing environment.") + (license license:expat))) + (define-public r-dvmisc (package (name "r-dvmisc") From f0bff69873b53a9bdcf3817bc02162354c5256b4 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 22:10:21 +0100 Subject: [PATCH 061/194] gnu: Add r-survey. * gnu/packages/cran.scm (r-survey): New variable. --- gnu/packages/cran.scm | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b3378322d1..cf00ee5e23 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7166,6 +7166,39 @@ animation. In RStudio, images are automatically previewed when printed to the console, resulting in an interactive editing environment.") (license license:expat))) +(define-public r-survey + (package + (name "r-survey") + (version "3.35-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "survey" version)) + (sha256 + (base32 + "1nv4sdfmidvyjgvp3zvn5iw35bb8w0v7095is2pdy8cckkgdvr8i")))) + (build-system r-build-system) + (propagated-inputs + `(("r-lattice" ,r-lattice) + ("r-matrix" ,r-matrix) + ("r-minqa" ,r-minqa) + ("r-numderiv" ,r-numderiv) + ("r-survival" ,r-survival))) + (home-page "http://r-survey.r-forge.r-project.org/survey/") + (synopsis "Analysis of complex survey samples") + (description + "This package provides tools for the analysis of complex survey samples. +The provided features include: summary statistics, two-sample tests, rank +tests, generalised linear models, cumulative link models, Cox models, +loglinear models, and general maximum pseudolikelihood estimation for +multistage stratified, cluster-sampled, unequally weighted survey samples; +variances by Taylor series linearisation or replicate weights; +post-stratification, calibration, and raking; two-phase subsampling designs; +graphics; PPS sampling without replacement; principal components, and factor +analysis.") + ;; Either version of the GPL. + (license (list license:gpl2 license:gpl3)))) + (define-public r-dvmisc (package (name "r-dvmisc") From 6e8b38d3e88545d7b3d3f6318e536d8269358664 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 22:16:23 +0100 Subject: [PATCH 062/194] gnu: Add r-furrr. * gnu/packages/cran.scm (r-furrr): New variable. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index cf00ee5e23..5d401e38fd 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6814,6 +6814,32 @@ not found in either TASSEL or @code{r-qtl} in addition to visualization of genotypes as \"graphical genotypes\".") (license license:gpl3))) +(define-public r-furrr + (package + (name "r-furrr") + (version "0.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "furrr" version)) + (sha256 + (base32 + "1ld9aa9hydna94hgm6p91zjbfv1dz1vsgchjlpknkg6irbvkfafx")))) + (build-system r-build-system) + (propagated-inputs + `(("r-future" ,r-future) + ("r-globals" ,r-globals) + ("r-purrr" ,r-purrr) + ("r-rlang" ,r-rlang))) + (home-page "https://github.com/DavisVaughan/furrr") + (synopsis "Apply mapping functions in parallel using futures") + (description + "This package provides implementations of the family of @code{map()} +functions from the @code{purrr} package that can be resolved using any +@code{future}-supported backend, e.g. parallel on the local machine or +distributed on a compute cluster.") + (license license:lgpl2.1+))) + (define-public r-abjutils (package (name "r-abjutils") From d1c2fd8eeb51f88b4f06a9ab6158414ec2ea9602 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 22:24:11 +0100 Subject: [PATCH 063/194] gnu: r-future-apply: Update to 1.2.0. * gnu/packages/cran.scm (r-future-apply): Update to 1.2.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 5d401e38fd..611d33972a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -10714,14 +10714,14 @@ the local machine to, say, distributed processing on a remote compute cluster.") (define-public r-future-apply (package (name "r-future-apply") - (version "1.1.0") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "future.apply" version)) (sha256 (base32 - "0b6v9rxvnnz13sydbgkapw71hx98fwdczjchgqnspjmq2340kdc0")))) + "00ma43ma3byrf9vfqqn9g8sn18c71ryhk7lpza5h7817f1kibw1h")))) (properties `((upstream-name . "future.apply"))) (build-system r-build-system) (propagated-inputs From fadc49c6e5d974cbde9c4a495a3c6c7fcc742915 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 22:25:22 +0100 Subject: [PATCH 064/194] gnu: r-vegan: Update to 2.5-4. * gnu/packages/cran.scm (r-vegan): Update to 2.5-4. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 611d33972a..26e8c11309 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -156,14 +156,14 @@ read a protected key.") (define-public r-vegan (package (name "r-vegan") - (version "2.5-3") + (version "2.5-4") (source (origin (method url-fetch) (uri (cran-uri "vegan" version)) (sha256 (base32 - "023xznh0iy0496icpchadmp7a3rk3nj9s48fvwlvp3dssw58yp3c")))) + "1q4khii0xbjwmkida0b35q8rmwhg325qizjwz6slkjhz250a85ji")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) From 75cbc80037ffb6f43c2b7b81bd0cc249e2622509 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:02:46 +0100 Subject: [PATCH 065/194] gnu: r-network: Update to 1.14-377. * gnu/packages/cran.scm (r-network): Update to 1.14-377. [propagated-inputs]: Add r-magrittr and r-tibble. --- gnu/packages/cran.scm | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 26e8c11309..867931e090 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3742,15 +3742,18 @@ published results; and a routine for graphical display.") (define-public r-network (package (name "r-network") - (version "1.13.0.1") + (version "1.14-377") (source (origin (method url-fetch) (uri (cran-uri "network" version)) (sha256 (base32 - "1bbkbqkqf1d7irfwh08c13c2pfypir1ssvlqrln83irqns1ikdv0")))) + "0iiy5n17kysrdfs20zr7qald4lwkvws0axi1qkr8f7vzv7w04g01")))) (build-system r-build-system) + (propagated-inputs + `(("r-magrittr" ,r-magrittr) + ("r-tibble" ,r-tibble))) (home-page "https://statnet.org/") (synopsis "Classes for relational data") (description From 83ef38b03853821cda253aed12137b0639b86b62 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:03:22 +0100 Subject: [PATCH 066/194] gnu: r-epi: Update to 2.35. * gnu/packages/cran.scm (r-epi): Update to 2.35. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 867931e090..b5d74f3854 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -10503,14 +10503,14 @@ model with finite state space using the Aalen-Johansen estimator.") (define-public r-epi (package (name "r-epi") - (version "2.32") + (version "2.35") (source (origin (method url-fetch) (uri (cran-uri "Epi" version)) (sha256 (base32 - "14n24xlm7pwdc54w2hlpjhfal1zpzm87rv3rjfckiz47d3w7dwqm")))) + "1z3959761ryv54y6vsrxxvhrwzz50xrxn55pqh5y7lrxh91zdsvl")))) (properties `((upstream-name . "Epi"))) (build-system r-build-system) (propagated-inputs From d235cf7268450f35598980b0561754708475fb64 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:09:56 +0100 Subject: [PATCH 067/194] gnu: r-shiny: Update to 1.2.0. * gnu/packages/cran.scm (r-shiny): Update to 1.2.0. [arguments]: Adjust processing of minified JavaScript. --- gnu/packages/cran.scm | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b5d74f3854..810fe5439b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -639,7 +639,7 @@ and vice-versa.") (define-public r-shiny (package (name "r-shiny") - (version "1.1.0") + (version "1.2.0") (source (origin (method git-fetch) @@ -649,7 +649,7 @@ and vice-versa.") (file-name (git-file-name name version)) (sha256 (base32 - "041q2gzvzs13syfhbirmkik96asdji8dxnnbs63j7v1ks97hrvvz")))) + "1kl3dh68h4cnrm3rqn9pddk5n6bsmr5x0626bkfv0qqi0q92zin4")))) (build-system r-build-system) (arguments `(#:modules ((guix build r-build-system) @@ -700,8 +700,6 @@ and vice-versa.") (minify source #:target target))) '(("jqueryui/jquery-ui.js" . "jqueryui/jquery-ui.min.js") - ("showdown/src/showdown.js" . - "showdown/compressed/showdown.js") ("datepicker/js/bootstrap-datepicker.js" . "datepicker/js/bootstrap-datepicker.min.js") ("ionrangeslider/js/ion.rangeSlider.js" . From aeb11b7549f962965ea73a4fa323c78d72075e33 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:22:54 +0100 Subject: [PATCH 068/194] gnu: r-ggthemes: Update to 4.1.0. * gnu/packages/statistics.scm (r-ggthemes): Update to 4.1.0. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index e1f48db22d..cf507e2509 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4424,13 +4424,13 @@ data at that region, and avoids over-plotting.") (define-public r-ggthemes (package (name "r-ggthemes") - (version "4.0.1") + (version "4.1.0") (source (origin (method url-fetch) (uri (cran-uri "ggthemes" version)) (sha256 (base32 - "0y6570wv135sf7pv57l7bqilzw47rziaqx4vsk45pf1w4lmj0w8b")))) + "1a6r384v72hb91qkg9rz2m7s3qskbl9haxynf2vzz6v1ak9xd4c5")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) From e51096b2ea1603de07eaded11734b4c9376642cf Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:23:22 +0100 Subject: [PATCH 069/194] gnu: r-vgam: Update to 1.1-1. * gnu/packages/statistics.scm (r-vgam): Update to 1.1-1. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index cf507e2509..84bfe801de 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4981,14 +4981,14 @@ groupings.") (define-public r-vgam (package (name "r-vgam") - (version "1.0-6") + (version "1.1-1") (source (origin (method url-fetch) (uri (cran-uri "VGAM" version)) (sha256 (base32 - "1fg31xz86jblqraifiy3q36d0hjqnll01jxx85xq87j1cyhj060j")))) + "0lnsqx3q3k0c7sj8gj0n6shn2fyxwrh8xph8h1r1i23ybbb2n6fy")))) (properties `((upstream-name . "VGAM"))) (build-system r-build-system) (inputs From b58220f5992297d0c561e5e9e23175ead9557896 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:24:13 +0100 Subject: [PATCH 070/194] gnu: r-pbapply: Update to 1.4-0. * gnu/packages/statistics.scm (r-pbapply): Update to 1.4-0. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 84bfe801de..276e1783a7 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -5006,14 +5006,14 @@ VGLMs can be loosely thought of as multivariate generalised linear models.") (define-public r-pbapply (package (name "r-pbapply") - (version "1.3-4") + (version "1.4-0") (source (origin (method url-fetch) (uri (cran-uri "pbapply" version)) (sha256 (base32 - "0lk5kxac09xzdv6vf7ix6r5bfrm7cnpyr2l5mkd4igpciadszzfd")))) + "0bn7a9ni36xy5acnrl9ky3gd1k8jr5kxgazzh3pzd1q6bri1nx7k")))) (build-system r-build-system) (home-page "https://github.com/psolymos/pbapply") (synopsis "Adding progress bar to apply functions") From 84840deb958a5de191126bd62b9612e6b1eb0907 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:31:40 +0100 Subject: [PATCH 071/194] gnu: r-purrr: Update to 0.3.1. * gnu/packages/statistics.scm (r-purrr): Update to 0.3.1. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 276e1783a7..6b5afd1b14 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -3780,14 +3780,14 @@ It uses and relies on grid graphics and formal (S4) classes and methods.") (define-public r-purrr (package (name "r-purrr") - (version "0.3.0") + (version "0.3.1") (source (origin (method url-fetch) (uri (cran-uri "purrr" version)) (sha256 (base32 - "0mzbf9ca8qdrqkrh9x7yzqxiab9bk10ql46qr1wl2bgbflminzda")))) + "0fw8nyrwf009fpj3457binw5s02si226yrvn96hdivwj268ck8y2")))) (build-system r-build-system) (propagated-inputs `(("r-magrittr" ,r-magrittr) From ebd37b49f9ea20ebcd88939c7ae990ed93cd3af3 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:31:58 +0100 Subject: [PATCH 072/194] gnu: r-tidyr: Update to 0.8.3. * gnu/packages/statistics.scm (r-tidyr): Update to 0.8.3. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 6b5afd1b14..1c3d7e4b00 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -3724,14 +3724,14 @@ selection.") (define-public r-tidyr (package (name "r-tidyr") - (version "0.8.2") + (version "0.8.3") (source (origin (method url-fetch) (uri (cran-uri "tidyr" version)) (sha256 (base32 - "03s9dv6c2dj65a769h8fgy9878y46rdq7x65i53kd44kag80i9cr")))) + "0dyc4b03wi65bk7j0ma0y188syh37h57wgxji82i0h8j6pn593x1")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) From ed4100dc967693a3257a481c884ecde97eb749fa Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:32:18 +0100 Subject: [PATCH 073/194] gnu: r-mvtnorm: Update to 1.0-10. * gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-10. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 1c3d7e4b00..448a733824 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -3603,13 +3603,13 @@ vignettes.") (define-public r-mvtnorm (package (name "r-mvtnorm") - (version "1.0-8") + (version "1.0-10") (source (origin (method url-fetch) (uri (cran-uri "mvtnorm" version)) (sha256 (base32 - "0la42lylb7cjrcrc285bn69bz9kyg556xw317iz139dp1yswl410")))) + "04md0wmqgif24g0a4hx19ifn4kk8nx10986vf2d9vascig6ikpri")))) (build-system r-build-system) (inputs `(("gfortran" ,gfortran))) From 21886e730b0982aaf13fdc08707d1e75a54bedae Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:32:38 +0100 Subject: [PATCH 074/194] gnu: r-r-rsp: Update to 0.43.1. * gnu/packages/statistics.scm (r-r-rsp): Update to 0.43.1. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 448a733824..0ee01765df 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -3571,13 +3571,13 @@ persistent (on the file system).") (define-public r-r-rsp (package (name "r-r-rsp") - (version "0.43.0") + (version "0.43.1") (source (origin (method url-fetch) (uri (cran-uri "R.rsp" version)) (sha256 (base32 - "0ax6781kfylx0acz0i3sqnpkxmrq73x29wwfic59ng7vj0ws0gyd")))) + "0i01p8jxc4j4zl2v2ykvvpfnm5hv650zj1wi1dh8hq0c98xi2yfr")))) (properties `((upstream-name . "R.rsp"))) (build-system r-build-system) (propagated-inputs From 3db71d065c42cb670374ac18752d0c8ca7cad53b Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:32:51 +0100 Subject: [PATCH 075/194] gnu: r-r-utils: Update to 2.8.0. * gnu/packages/statistics.scm (r-r-utils): Update to 2.8.0. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 0ee01765df..69003c5075 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -3523,13 +3523,13 @@ maintenance for package developers.") (define-public r-r-utils (package (name "r-r-utils") - (version "2.7.0") + (version "2.8.0") (source (origin (method url-fetch) (uri (cran-uri "R.utils" version)) (sha256 (base32 - "0cxhn14a57x4gcyrwpfz1d6dw4xh0jcpqkb33hx8imnr340blh7n")))) + "1jaarld1jgpzh18kh9g3rlzcrk51vdgn2n1d1y28szzxlz94vifg")))) (properties `((upstream-name . "R.utils"))) (build-system r-build-system) (propagated-inputs From b22a20405a007143134b893775c07c5472bc4d60 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:33:07 +0100 Subject: [PATCH 076/194] gnu: r-registry: Update to 0.5-1. * gnu/packages/statistics.scm (r-registry): Update to 0.5-1. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 69003c5075..b75b909513 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -3276,14 +3276,14 @@ options and registries, vignette, unit test and bibtex related utilities.") (define-public r-registry (package (name "r-registry") - (version "0.5") + (version "0.5-1") (source (origin (method url-fetch) (uri (cran-uri "registry" version)) (sha256 (base32 - "1yqfl1g6vsl28zn8brzc39659k8lqsmfms7900j7p64ilydyb2sx")))) + "1k3j6dx350awamr0dwwgkhfs46vsnj4nf08iw5byq0x7n3nkdsnz")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/registry") (synopsis "Infrastructure for R package registries") From 6be62a5a72ed7314cbd3fb30663b46308d398a99 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:33:20 +0100 Subject: [PATCH 077/194] gnu: r-irlba: Update to 2.3.3. * gnu/packages/statistics.scm (r-irlba): Update to 2.3.3. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index b75b909513..42dfca59f9 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -3197,14 +3197,14 @@ flexible than the orphaned \"base64\" package.") (define-public r-irlba (package (name "r-irlba") - (version "2.3.2") + (version "2.3.3") (source (origin (method url-fetch) (uri (cran-uri "irlba" version)) (sha256 (base32 - "0f7wb12wa0zbyllk5adcf4f517wgjpkhsx4j176i9ax6xy7jvprz")))) + "1h7mzrqdjc41814cf6c93sbyl7nxwvsf3x8apl9rhmydgdlk7qkf")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) From bc7895e1cf16a51ecb185f21b3617239808da637 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:33:34 +0100 Subject: [PATCH 078/194] gnu: r-flexmix: Update to 2.3-15. * gnu/packages/statistics.scm (r-flexmix): Update to 2.3-15. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 42dfca59f9..46ab017567 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -4702,14 +4702,14 @@ to change in the future.") (define-public r-flexmix (package (name "r-flexmix") - (version "2.3-14") + (version "2.3-15") (source (origin (method url-fetch) (uri (cran-uri "flexmix" version)) (sha256 (base32 - "0sl4zxh1sb2sr5q7svjw9ihrm219jzn82yrc9d43q6r1b8bpyz43")))) + "0hrz2axp2c9548b1r0bmrl57219nn030qndb83a8garkzq5lqi5s")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice) From 4fadef3ba056189d15baeea701fee620b427b4db Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:33:51 +0100 Subject: [PATCH 079/194] gnu: r-xml: Update to 3.98-1.19. * gnu/packages/statistics.scm (r-xml): Update to 3.98-1.19. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 46ab017567..3419501c82 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2862,13 +2862,13 @@ ldap, and also supports cookies, redirects, authentication, etc.") (define-public r-xml (package (name "r-xml") - (version "3.98-1.16") + (version "3.98-1.19") (source (origin (method url-fetch) (uri (cran-uri "XML" version)) (sha256 (base32 - "0nl1kk354r8snhj6p9mc74m7awvqc6akmd4y3a46y78yv3g15njp")))) + "1axyfa56q45x7z4zd56aasdn9hz9niv2vv5qm1zp9i94vyic9cc1")))) (properties `((upstream-name . "XML"))) (build-system r-build-system) From a1d9387d82af82fd50b6cd07488de3082e88e0cb Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:34:04 +0100 Subject: [PATCH 080/194] gnu: r-catools: Update to 1.17.1.2. * gnu/packages/statistics.scm (r-catools): Update to 1.17.1.2. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 3419501c82..45c689a07c 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2630,13 +2630,13 @@ vectors.") (define-public r-catools (package (name "r-catools") - (version "1.17.1.1") + (version "1.17.1.2") (source (origin (method url-fetch) (uri (cran-uri "caTools" version)) (sha256 (base32 - "01hccp05gz25vhz9nnxv1c91lrxlr7drcw9xf124gggifxf2qgnm")))) + "0svj31y7h8vimvliygmmbl7pk850qk80k1vn38mlcxsnmcpm9k39")))) (properties `((upstream-name . "caTools"))) (build-system r-build-system) (propagated-inputs From 9066534d4cf2316f36433c719abce5e92e3e3b50 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:34:18 +0100 Subject: [PATCH 081/194] gnu: r-openssl: Update to 1.2.2. * gnu/packages/statistics.scm (r-openssl): Update to 1.2.2. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 45c689a07c..071877c439 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2318,14 +2318,14 @@ collation, and NAMESPACE files.") (define-public r-openssl (package (name "r-openssl") - (version "1.2.1") + (version "1.2.2") (source (origin (method url-fetch) (uri (cran-uri "openssl" version)) (sha256 (base32 - "0ypa41qr58jgipzkqn3wjqdsjyi7qk57i46s5wy88xy3j8jl9jkv")))) + "0jfkna9zzhy2m5qd8501ija5jnpxzjn8wi3wjw0kr2fm4sl7qynz")))) (build-system r-build-system) (inputs `(("libressl" ,libressl))) From 17abcd521a68b071f95423b8f48abe5d5fe51538 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:34:31 +0100 Subject: [PATCH 082/194] gnu: r-ranger: Update to 0.11.2. * gnu/packages/statistics.scm (r-ranger): Update to 0.11.2. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 071877c439..d4194e6e8c 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -5428,14 +5428,14 @@ diagnostic tools (@code{ctlcurves} and @code{DiscrFact}).") (define-public r-ranger (package (name "r-ranger") - (version "0.11.1") + (version "0.11.2") (source (origin (method url-fetch) (uri (cran-uri "ranger" version)) (sha256 (base32 - "1yyg1nppq76jngzffd44brppqrlxqdhv92pyy0gn09rfc0ab37wr")))) + "1sxyzxmjc6lm8wcmq15j6sscnza7aay4mr3dyri2zngx6fa8mb0k")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp) From 605fcf8a2377aad92c0ffa6cc8628075f7eefb3f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:34:46 +0100 Subject: [PATCH 083/194] gnu: r-stringr: Update to 1.4.0. * gnu/packages/statistics.scm (r-stringr): Update to 1.4.0. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index d4194e6e8c..7ca2d0d296 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1047,13 +1047,13 @@ transliteration, concatenation, date-time formatting and parsing, etc.") (define-public r-stringr (package (name "r-stringr") - (version "1.3.1") + (version "1.4.0") (source (origin (method url-fetch) (uri (cran-uri "stringr" version)) (sha256 - (base32 "0hq3ybz7clnifi5wdm2s6p2i0kzljdkv26blg6yphng472h8x2vs")))) + (base32 "1p9ip7p87gbbg4s6d3d392svvzz2b5dqdq2c8ilgvn4s78nlsq47")))) (build-system r-build-system) (propagated-inputs `(("r-glue" ,r-glue) From 71fe7f9d21fc6f200ac06706ebd64009871d1414 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:34:57 +0100 Subject: [PATCH 084/194] gnu: r-stringi: Update to 1.3.1. * gnu/packages/statistics.scm (r-stringi): Update to 1.3.1. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 7ca2d0d296..1e4764075e 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1021,14 +1021,14 @@ solution for sending email, including attachments, from within R.") (define-public r-stringi (package (name "r-stringi") - (version "1.2.4") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "stringi" version)) (sha256 (base32 - "1y46xab7g1lsjmilp4hbl7pjad6pcxp66hdj8wnfdg9518h0lmq1")))) + "0qn3xy6vnz11vv2prbm55vkbgxr6dl8w5vk5q8d7wlp9nqxndprj")))) (build-system r-build-system) (inputs `(("icu4c" ,icu4c))) (native-inputs `(("pkg-config" ,pkg-config))) From 48a4b775b9a80c7c26d75154fb1e24b29f60f028 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:35:09 +0100 Subject: [PATCH 085/194] gnu: r-mgcv: Update to 1.8-27. * gnu/packages/statistics.scm (r-mgcv): Update to 1.8-27. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 1e4764075e..24aef99efa 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -593,14 +593,14 @@ nonlinear mixed-effects models.") (define-public r-mgcv (package (name "r-mgcv") - (version "1.8-26") + (version "1.8-27") (source (origin (method url-fetch) (uri (cran-uri "mgcv" version)) (sha256 (base32 - "02bsz455fr5hyhpmgcrd266qafs2wbz3ygdipxg9gfazbdvq2v4q")))) + "06vx1z52gcdmji0phmphfa0sg62gwxkw590prplxgv4da7xrk2y8")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix) From 1f7a76a0c164ecf9b4a153ce0c8ce828db255893 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:35:28 +0100 Subject: [PATCH 086/194] gnu: r-evaluate: Update to 0.13. * gnu/packages/statistics.scm (r-evaluate): Update to 0.13. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 24aef99efa..3be9a46eb0 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1310,13 +1310,13 @@ for template use among CRAN packages.") (define-public r-evaluate (package (name "r-evaluate") - (version "0.12") + (version "0.13") (source (origin (method url-fetch) (uri (cran-uri "evaluate" version)) (sha256 (base32 - "11rpn40153kcvqqrfhg2ldqfs68frg6yzsl0k3rxnlnv4c0v008g")))) + "0igvc27rsqxcswjb9slnpi5d509rffxn1y5d82hgqvv970nl3p2q")))) (build-system r-build-system) (home-page "https://github.com/hadley/evaluate") (synopsis "Parsing and evaluation tools for R") From 4b16c00e9a98aa32bdc7678d73ea0f0a31fc4b73 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:35:41 +0100 Subject: [PATCH 087/194] gnu: r-formatr: Update to 1.6. * gnu/packages/statistics.scm (r-formatr): Update to 1.6. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 3be9a46eb0..774a917ae5 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1330,13 +1330,13 @@ adapted for other output formats, such as HTML or LaTeX.") (define-public r-formatr (package (name "r-formatr") - (version "1.5") + (version "1.6") (source (origin (method url-fetch) (uri (cran-uri "formatR" version)) (sha256 (base32 - "19sd23vgs4ac0fwlw40j3676k6mramb0ajlq8hdw23kjwdx1jk47")))) + "0a9229rg3s9qga5v2fwfdqr0z3bk2yycv8kijrcm3jh66l68zjgm")))) (build-system r-build-system) (home-page "http://yihui.name/formatR") (synopsis "Format R code automatically") From 6a0a2342dd079fcf0840eda4df43d71f602020a1 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:35:54 +0100 Subject: [PATCH 088/194] gnu: r-r6: Update to 2.4.0. * gnu/packages/statistics.scm (r-r6): Update to 2.4.0. --- gnu/packages/statistics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 774a917ae5..aa3d79d737 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1613,13 +1613,13 @@ flexible and easy to set up.") (define-public r-r6 (package (name "r-r6") - (version "2.3.0") + (version "2.4.0") (source (origin (method url-fetch) (uri (cran-uri "R6" version)) (sha256 (base32 - "1jgshp0x8a65rwyvk31slnfp7l153dk5826y2rxcd5lpclby3d85")))) + "1kmbw2k5vvzwh3wwmn66mszpfny0z6k8dca980qgbxgvfh0i3gkh")))) (build-system r-build-system) (home-page "https://github.com/wch/R6/") (synopsis "Classes with reference semantics in R") From 34a98f79d70d2d57c0e5b31339aa7c78132000c2 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:36:10 +0100 Subject: [PATCH 089/194] gnu: r-forcats: Update to 0.4.0. * gnu/packages/statistics.scm (r-forcats): Update to 0.4.0. [propagated-inputs]: Add r-ellipsis. --- gnu/packages/statistics.scm | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index aa3d79d737..666b139ee5 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -5561,17 +5561,18 @@ and the corresponding decision threshold.") (define-public r-forcats (package (name "r-forcats") - (version "0.3.0") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "forcats" version)) (sha256 (base32 - "0mxn1hng43zdjh1v8shd80hrszrqahcpaqxs1s1sif0qxh84d0cm")))) + "1cnjh23z59fhbjmy7y95425hcq3m5wrwqvahsxwi7zm6d9bwp0vw")))) (build-system r-build-system) (propagated-inputs - `(("r-magrittr" ,r-magrittr) + `(("r-ellipsis" ,r-ellipsis) + ("r-magrittr" ,r-magrittr) ("r-tibble" ,r-tibble) ("r-rlang" ,r-rlang))) (home-page "http://forcats.tidyverse.org") From 6caf80fbaf4b59f31c7ae140efe03de48b7946ab Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:36:44 +0100 Subject: [PATCH 090/194] gnu: r-lme4: Update to 1.1-21. * gnu/packages/statistics.scm (r-lme4): Update to 1.1-21. [native-inputs]: Move r-rcpp and r-rcppeigen from here... [propagated-inputs]: ...to here; add r-boot. --- gnu/packages/statistics.scm | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 666b139ee5..e85077a036 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -5175,25 +5175,25 @@ algorithms.") (define-public r-lme4 (package (name "r-lme4") - (version "1.1-19") + (version "1.1-21") (source (origin (method url-fetch) (uri (cran-uri "lme4" version)) (sha256 (base32 - "0j8xhkkcdv45ilab960s9jrcjk6jbzvd7w7myswv5fmalrpq52pf")))) + "035j2hqkwv939xl07pm2vykvf3wlx8qj317846n9pkpqkyv58mbz")))) (build-system r-build-system) - (native-inputs - `(("r-rcpp" ,r-rcpp) - ("r-rcppeigen" ,r-rcppeigen))) (propagated-inputs - `(("r-lattice" ,r-lattice) + `(("r-boot" ,r-boot) + ("r-lattice" ,r-lattice) + ("r-mass" ,r-mass) ("r-matrix" ,r-matrix) ("r-minqa" ,r-minqa) ("r-nloptr" ,r-nloptr) - ("r-mass" ,r-mass) - ("r-nlme" ,r-nlme))) + ("r-nlme" ,r-nlme) + ("r-rcpp" ,r-rcpp) + ("r-rcppeigen" ,r-rcppeigen))) (home-page "https://cran.r-project.org/web/packages/lme4") (synopsis "Linear mixed-effects models using eigen and S4") (description From ed494a0acd92ae2a41af19514eb54505016da870 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:37:47 +0100 Subject: [PATCH 091/194] gnu: r-dplyr: Update to 0.8.0.1. * gnu/packages/statistics.scm (r-dplyr): Update to 0.8.0.1. [native-inputs]: Move r-rcpp and r-bh from here... [propagated-inputs]: ...to here; remove r-bindrcpp. --- gnu/packages/statistics.scm | 18 ++++++++---------- 1 file changed, 8 insertions(+), 10 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index e85077a036..eaca034366 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1679,28 +1679,26 @@ and printing capabilities than traditional data frames.") (define-public r-dplyr (package (name "r-dplyr") - (version "0.7.8") + (version "0.8.0.1") (source (origin (method url-fetch) (uri (cran-uri "dplyr" version)) (sha256 (base32 - "06p59nhli8c1sarghzxq0y4pk6lyyz3xwkarp55b252dfg2rly9p")))) + "0p6dbjrgqyklc67g53v1a5xdp9x2jpcsdcs6v3djf9d366fqh244")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) - ("r-r6" ,r-r6) - ("r-magrittr" ,r-magrittr) - ("r-rlang" ,r-rlang) - ("r-plogr" ,r-plogr) + ("r-bh" ,r-bh) ("r-glue" ,r-glue) + ("r-magrittr" ,r-magrittr) ("r-pkgconfig" ,r-pkgconfig) - ("r-bindrcpp" ,r-bindrcpp) + ("r-plogr" ,r-plogr) + ("r-r6" ,r-r6) + ("r-rcpp" ,r-rcpp) + ("r-rlang" ,r-rlang) ("r-tibble" ,r-tibble) ("r-tidyselect" ,r-tidyselect))) - (native-inputs - `(("r-rcpp" ,r-rcpp) - ("r-bh" ,r-bh))) (home-page "https://github.com/hadley/dplyr") (synopsis "Tools for working with data frames in R") (description From f59cdeaf25137b3e090ca5377653314c28f80b36 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:39:07 +0100 Subject: [PATCH 092/194] gnu: r-igraph: Update to 1.2.4. * gnu/packages/graph.scm (r-igraph): Update to 1.2.4. --- gnu/packages/graph.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm index bb98250fba..7ed13d37c7 100644 --- a/gnu/packages/graph.scm +++ b/gnu/packages/graph.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2017, 2018 Ricardo Wurmus +;;; Copyright © 2017, 2018, 2019 Ricardo Wurmus ;;; Copyright © 2018 Joshua Sierles, Nextjournal ;;; Copyright © 2018 Tobias Geerinckx-Rice ;;; @@ -100,14 +100,14 @@ more.") (define-public r-igraph (package (name "r-igraph") - (version "1.2.2") + (version "1.2.4") (source (origin (method url-fetch) (uri (cran-uri "igraph" version)) (sha256 (base32 - "1bggm7b8v3bh7q2589w26qvd7sgs69m4qiij7d0rbm0ykkgxm8lx")))) + "1jwjjl0l4054w05bik17p2d6rj3lx68iv716phajhnbbmckfnj0h")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) From 7706a98cda0aa2e1feb99bbef515c1291d3d0ffe Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:39:35 +0100 Subject: [PATCH 093/194] gnu: r-huge: Update to 1.3.0. * gnu/packages/cran.scm (r-huge): Update to 1.3.0. [propagated-inputs]: Add r-rcpp and r-rcppeigen; remove r-lattice. --- gnu/packages/cran.scm | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 810fe5439b..ec8ae655d4 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -10560,20 +10560,21 @@ regression coefficients can be conducted via jackknifing.") (define-public r-huge (package (name "r-huge") - (version "1.2.7") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "huge" version)) (sha256 (base32 - "134d951x42vy9dcmf155fbvik2934nh6qm2w5jlx3x2c6cf7faq4")))) + "18psr7arynax38hcc5y9dxskhsg4a5zjw3hjbgf96zy59wdib5ch")))) (build-system r-build-system) (propagated-inputs `(("r-igraph" ,r-igraph) - ("r-lattice" ,r-lattice) ("r-mass" ,r-mass) - ("r-matrix" ,r-matrix))) + ("r-matrix" ,r-matrix) + ("r-rcpp" ,r-rcpp) + ("r-rcppeigen" ,r-rcppeigen))) (home-page "https://cran.r-project.org/web/packages/huge") (synopsis "High-dimensional undirected graph estimation") (description From 8a05d17037602c0d06cc028da1ece9fa902315ac Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:40:09 +0100 Subject: [PATCH 094/194] gnu: r-gmp: Update to 0.5-13.4. * gnu/packages/cran.scm (r-gmp): Update to 0.5-13.4. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ec8ae655d4..0cd1ff6897 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -9684,14 +9684,14 @@ and manipulating sets of ontological terms.") (define-public r-gmp (package (name "r-gmp") - (version "0.5-13.2") + (version "0.5-13.4") (source (origin (method url-fetch) (uri (cran-uri "gmp" version)) (sha256 (base32 - "1xd6jjra4niqv1kps91y348lwgvy73p2faxaia4gfzdnrpw7wsxf")))) + "15jifzwbzqcnq2apzvsylkx4k9lillkgblm4wf4wb7y31ys0amph")))) (build-system r-build-system) (arguments '(#:phases From 4bc5d4514403fc52dcb989df3b477f874bea6002 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:40:26 +0100 Subject: [PATCH 095/194] gnu: r-bigrquery: Update to 1.1.0. * gnu/packages/cran.scm (r-bigrquery): Update to 1.1.0. [propagated-inputs]: Add r-bit64. --- gnu/packages/cran.scm | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 0cd1ff6897..b65a04b6de 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -9654,17 +9654,18 @@ and manipulating sets of ontological terms.") (define-public r-bigrquery (package (name "r-bigrquery") - (version "1.0.0") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "bigrquery" version)) (sha256 (base32 - "0z7wsqxla1pg2454l35kkfaz2s9hppwvpz1pds286ddldbbmyzis")))) + "0h2nzyn1w0padpl61l467j7vlkc2wair7sh6p26p94z4zfsnv0i1")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) + ("r-bit64" ,r-bit64) ("r-curl" ,r-curl) ("r-dbi" ,r-dbi) ("r-glue" ,r-glue) From 0b14b100a226f72aeb9f1cbb4f8bcdf3cd304212 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:40:52 +0100 Subject: [PATCH 096/194] gnu: r-tidytree: Update to 0.2.4. * gnu/packages/cran.scm (r-tidytree): Update to 0.2.4. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b65a04b6de..49f47c7b56 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -8936,14 +8936,14 @@ maps.") (define-public r-tidytree (package (name "r-tidytree") - (version "0.2.1") + (version "0.2.4") (source (origin (method url-fetch) (uri (cran-uri "tidytree" version)) (sha256 (base32 - "1sx69wvlp7k761cmglrzq2jxkm2iq27x6bhhdcisj62wryj96wb2")))) + "04bznlfs617plv258nmsyq2pywnijcnzy2pbn5b2fgjk2xqkp29w")))) (build-system r-build-system) (propagated-inputs `(("r-ape" ,r-ape) From 91f0b745f6fe9ce15834cd8b4f13dea891673baa Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:41:21 +0100 Subject: [PATCH 097/194] gnu: r-ks: Update to 1.11.4. * gnu/packages/cran.scm (r-ks): Update to 1.11.4. [propagated-inputs]: Remove r-misc3d. --- gnu/packages/cran.scm | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 49f47c7b56..7d40c4e964 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -8552,14 +8552,14 @@ isosurfaces.") (define-public r-ks (package (name "r-ks") - (version "1.11.3") + (version "1.11.4") (source (origin (method url-fetch) (uri (cran-uri "ks" version)) (sha256 (base32 - "0z749c3xzpf6n0g7xcfplrhap1di8k7kcfr7vigh95ywnigyhs8d")))) + "0d5i8458s8ri9pcx2jm003z1ajk7ha3pmw1sr6lgn6a8d7wgmvqb")))) (build-system r-build-system) (propagated-inputs `(("r-fnn" ,r-fnn) @@ -8568,7 +8568,6 @@ isosurfaces.") ("r-matrix" ,r-matrix) ("r-mclust" ,r-mclust) ("r-mgcv" ,r-mgcv) - ("r-misc3d" ,r-misc3d) ("r-multicool" ,r-multicool) ("r-mvtnorm" ,r-mvtnorm))) (home-page "http://www.mvstat.net/tduong/") From f18ca07eef5fbf2f94229fe79947fd87a28cadd5 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:41:43 +0100 Subject: [PATCH 098/194] gnu: r-lmertest: Update to 3.1-0. * gnu/packages/cran.scm (r-lmertest): Update to 3.1-0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 7d40c4e964..bc6bd39b43 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -8305,14 +8305,14 @@ experiments using ANOVA or mixed models.") (define-public r-lmertest (package (name "r-lmertest") - (version "3.0-1") + (version "3.1-0") (source (origin (method url-fetch) (uri (cran-uri "lmerTest" version)) (sha256 (base32 - "0pia69sc8bn37mkiprdf91iilziqb865f94k6x6c26i33fg7rq4m")))) + "1nkz8cmxa5yb8q4i65bmhnn5pd4bhwcyjplyscynb24z3f64xp9b")))) (properties `((upstream-name . "lmerTest"))) (build-system r-build-system) (propagated-inputs From e2fee46f04c7104a96a49c213e51276732f51fc3 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:41:57 +0100 Subject: [PATCH 099/194] gnu: r-afex: Update to 0.23-0. * gnu/packages/cran.scm (r-afex): Update to 0.23-0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index bc6bd39b43..c0ee4908bc 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -8280,14 +8280,14 @@ analysing multivariate abundance data in community ecology.") (define-public r-afex (package (name "r-afex") - (version "0.22-1") + (version "0.23-0") (source (origin (method url-fetch) (uri (cran-uri "afex" version)) (sha256 (base32 - "065wbxljl77zqvc2c4gpfpfyc6mbnnrf24q399q9bxmrz3sapj8n")))) + "0yv4s7461swn0116y4wq9v139p1br5rr6hhnq1cmkbvybmwj2vp7")))) (build-system r-build-system) (propagated-inputs `(("r-car" ,r-car) From e0f861649c028fb2cbdde11c766c4ad17cb1a15d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:42:10 +0100 Subject: [PATCH 100/194] gnu: r-emmeans: Update to 1.3.3. * gnu/packages/cran.scm (r-emmeans): Update to 1.3.3. [propagated-inputs]: Add r-numderiv. --- gnu/packages/cran.scm | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c0ee4908bc..a3de88bb9f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7543,18 +7543,19 @@ Hothorn, Westfall, 2010, CRC Press).") (define-public r-emmeans (package (name "r-emmeans") - (version "1.3.2") + (version "1.3.3") (source (origin (method url-fetch) (uri (cran-uri "emmeans" version)) (sha256 (base32 - "0mg6y007hfmr601cq4jgxl5ncwbx79kkh7xs2i504m0rinxj8bf5")))) + "1hpal1vq6gryzvgfvv9f328idg0mgjvlfnhaj069dhb7zqfwhzlk")))) (build-system r-build-system) (propagated-inputs `(("r-estimability" ,r-estimability) ("r-mvtnorm" ,r-mvtnorm) + ("r-numderiv" ,r-numderiv) ("r-plyr" ,r-plyr) ("r-xtable" ,r-xtable))) (home-page "https://github.com/rvlenth/emmeans") From b1f39e8c38cee61ee7b38461f628c8ec502fd612 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:42:28 +0100 Subject: [PATCH 101/194] gnu: r-multcomp: Update to 1.4-10. * gnu/packages/cran.scm (r-multcomp): Update to 1.4-10. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a3de88bb9f..7d32546f54 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7515,14 +7515,14 @@ packages maintained by Torsten Hothorn.") (define-public r-multcomp (package (name "r-multcomp") - (version "1.4-8") + (version "1.4-10") (source (origin (method url-fetch) (uri (cran-uri "multcomp" version)) (sha256 (base32 - "0fm78g4zjc6ank316qfw977864shmy890znn4fahwc8jjdhpc252")))) + "1kzmdn9jmz5bmhf3wsfr12ljbasmwsgcsfdia52k0bi6q0swdg19")))) (build-system r-build-system) (propagated-inputs `(("r-codetools" ,r-codetools) From 5093cbdc0407a93717a5376b1724bd8ebf63e446 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:42:43 +0100 Subject: [PATCH 102/194] gnu: r-summarytools: Update to 0.9.2. * gnu/packages/cran.scm (r-summarytools): Update to 0.9.2. [propagated-inputs]: Add r-checkmate, r-dplyr, r-magick, and r-tidyr. --- gnu/packages/cran.scm | 12 ++++++++---- 1 file changed, 8 insertions(+), 4 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 7d32546f54..aac80c7a02 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -8108,23 +8108,27 @@ ways.") (define-public r-summarytools (package (name "r-summarytools") - (version "0.8.8") + (version "0.9.2") (source (origin (method url-fetch) (uri (cran-uri "summarytools" version)) (sha256 (base32 - "0z836m6ib9bznwcawn6xf8gck05ydxwi3bx4jbrbyqql4kci8zwb")))) + "1q83kii6prqf9z5v8cxj1q2944kx9x7dcxyqix3m883a94dmgivy")))) (build-system r-build-system) (propagated-inputs - `(("r-htmltools" ,r-htmltools) + `(("r-checkmate" ,r-checkmate) + ("r-dplyr" ,r-dplyr) + ("r-htmltools" ,r-htmltools) ("r-lubridate" ,r-lubridate) + ("r-magick" ,r-magick) ("r-matrixstats" ,r-matrixstats) ("r-pander" ,r-pander) ("r-pryr" ,r-pryr) ("r-rapportools" ,r-rapportools) - ("r-rcurl" ,r-rcurl))) + ("r-rcurl" ,r-rcurl) + ("r-tidyr" ,r-tidyr))) (home-page "https://github.com/dcomtois/summarytools") (synopsis "Tools to quickly and neatly summarize data") (description From a6a87db8ce8a450fd7c44527382d0b2926fafe08 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:43:19 +0100 Subject: [PATCH 103/194] gnu: r-dvmisc: Update to 1.1.3. * gnu/packages/cran.scm (r-dvmisc): Update to 1.1.3. [propagated-inputs]: Add r-cubature, r-data-table, r-dplyr, r-ggplot2, r-mvtnorm, r-pracma, r-purrr, and r-survey. --- gnu/packages/cran.scm | 16 ++++++++++++---- 1 file changed, 12 insertions(+), 4 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index aac80c7a02..a0f898720f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -7229,18 +7229,26 @@ analysis.") (define-public r-dvmisc (package (name "r-dvmisc") - (version "1.1.2") + (version "1.1.3") (source (origin (method url-fetch) (uri (cran-uri "dvmisc" version)) (sha256 - (base32 "1dy0yykskwhkql19bhzmbwsgv028afc8jh9yqwbczj6f3vpv31zh")))) + (base32 "0x391pxg5mqgp5xxc8qwhwxky8ds7d9gr9iwmsb12c92kxfk00bv")))) (build-system r-build-system) (propagated-inputs - `(("r-mass" ,r-mass) + `(("r-cubature" ,r-cubature) + ("r-data-table" ,r-data-table) + ("r-dplyr" ,r-dplyr) + ("r-ggplot2" ,r-ggplot2) + ("r-mass" ,r-mass) + ("r-mvtnorm" ,r-mvtnorm) + ("r-pracma" ,r-pracma) + ("r-purrr" ,r-purrr) ("r-rbenchmark" ,r-rbenchmark) - ("r-rcpp" ,r-rcpp))) + ("r-rcpp" ,r-rcpp) + ("r-survey" ,r-survey))) (home-page "https://cran.r-project.org/web/packages/dvmisc/") (synopsis "Faster computation of common statistics and miscellaneous functions") (description From a431c381664cf34e24bcdfddaf655960fea75fd4 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:44:12 +0100 Subject: [PATCH 104/194] gnu: r-hash: Update to 2.2.6.1. * gnu/packages/cran.scm (r-hash): Update to 2.2.6.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a0f898720f..13959fbb76 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6095,14 +6095,14 @@ and automatically generate usage notices.") (define-public r-hash (package (name "r-hash") - (version "2.2.6") + (version "2.2.6.1") (source (origin (method url-fetch) (uri (cran-uri "hash" version)) (sha256 (base32 - "0mkx59bmni3b283znvbndnkbar85fzavzdfgmwrhskidsqcz34yz")))) + "0b3fl0rvgwb992knl81vm99lsldg5clvaqjh6mamm6zqmb6dz056")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/hash/") (synopsis "Implementation of hash/associated arrays/dictionaries") From 1007b1b6d2822ebd1acbf533e18dfe9817f235ee Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:44:27 +0100 Subject: [PATCH 105/194] gnu: r-slam: Update to 0.1-45. * gnu/packages/cran.scm (r-slam): Update to 0.1-45. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 13959fbb76..c37293fbad 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6330,13 +6330,13 @@ the analyzed items.") (define-public r-slam (package (name "r-slam") - (version "0.1-44") + (version "0.1-45") (source (origin (method url-fetch) (uri (cran-uri "slam" version)) (sha256 - (base32 "11n956kid70931z0qyiql3v7nac1cfkamq44kzf9wl670pf8b033")))) + (base32 "0xvj8va6xd7zkn3l4a5ad7v62s7xmkz8frq7gpcl3b6vqwckkaw4")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/slam/") (synopsis "Sparse lightweight arrays and matrices") From 3d5bcae0c2141aa46145d54bf37f9709efb9c508 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:44:41 +0100 Subject: [PATCH 106/194] gnu: r-abjutils: Update to 0.2.3. * gnu/packages/cran.scm (r-abjutils): Update to 0.2.3. [propagated-inputs]: Add r-furrr, r-future, r-readr, and r-rlang; remove r-plyr. --- gnu/packages/cran.scm | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c37293fbad..879ac6bc14 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -6844,23 +6844,26 @@ distributed on a compute cluster.") (define-public r-abjutils (package (name "r-abjutils") - (version "0.2.1") + (version "0.2.3") (source (origin (method url-fetch) (uri (cran-uri "abjutils" version)) (sha256 - (base32 "0qrsc4if7aif73qp95lw6b5986c2r0jn7m39123zij8k15vc935b")))) + (base32 "0n4zps65y3zg0gfzlv97w91si52a9izkncirskbkj5x9hk0nhxcv")))) (build-system r-build-system) (propagated-inputs `(("r-devtools" ,r-devtools) ("r-dplyr" ,r-dplyr) + ("r-furrr" ,r-furrr) + ("r-future" ,r-future) ("r-glue" ,r-glue) ("r-httr" ,r-httr) ("r-magrittr" ,r-magrittr) - ("r-plyr" ,r-plyr) ("r-progress" ,r-progress) ("r-purrr" ,r-purrr) + ("r-readr" ,r-readr) + ("r-rlang" ,r-rlang) ("r-rstudioapi" ,r-rstudioapi) ("r-scales" ,r-scales) ("r-stringi" ,r-stringi) From 775455709032154b81da539622e51992e3130aae Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:45:15 +0100 Subject: [PATCH 107/194] gnu: r-prediction: Update to 0.3.6.2. * gnu/packages/cran.scm (r-prediction): Update to 0.3.6.2. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 879ac6bc14..be811fa47a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5784,14 +5784,14 @@ parse and convert strings into cases like snake or camel among others.") (define-public r-prediction (package (name "r-prediction") - (version "0.3.6.1") + (version "0.3.6.2") (source (origin (method url-fetch) (uri (cran-uri "prediction" version)) (sha256 (base32 - "1znxpacd79fjkf84w3493p1vmafanqfxsspwpwpkmda323bsxj0n")))) + "0kx7xbm2j6c8h6gk1iig4vfpg877psg16j74hl7zc2mv40sc6dy5")))) (build-system r-build-system) (propagated-inputs `(("r-data-table" ,r-data-table))) From fd1a17a5228a57c9738a022c383fca160533e216 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:45:26 +0100 Subject: [PATCH 108/194] gnu: r-officer: Update to 0.3.3. * gnu/packages/cran.scm (r-officer): Update to 0.3.3. [propagated-inputs]: Add r-rlang. --- gnu/packages/cran.scm | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index be811fa47a..06a79f8e9c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5621,14 +5621,14 @@ references and Rd files.") (define-public r-officer (package (name "r-officer") - (version "0.3.2") + (version "0.3.3") (source (origin (method url-fetch) (uri (cran-uri "officer" version)) (sha256 (base32 - "14b6ii9h3fi5g8ja929mfhxps9r7x78flqjdy437y9aygkhmiz2i")))) + "1ggdp8pbspn24sjshx1h48klivrx401vwk2df49j4wpwxh6dx26y")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) @@ -5637,6 +5637,7 @@ references and Rd files.") ("r-magrittr" ,r-magrittr) ("r-r6" ,r-r6) ("r-rcpp" ,r-rcpp) + ("r-rlang" ,r-rlang) ("r-uuid" ,r-uuid) ("r-xml2" ,r-xml2) ("r-zip" ,r-zip))) From d3f22f0aea30d77f2dcdfa057c08fa4802ba8401 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:45:39 +0100 Subject: [PATCH 109/194] gnu: r-reticulate: Update to 1.11.1. * gnu/packages/cran.scm (r-reticulate): Update to 1.11.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 06a79f8e9c..811f785cad 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5170,14 +5170,14 @@ obtain a better initial configuration in non-metric MDS.") (define-public r-reticulate (package (name "r-reticulate") - (version "1.10") + (version "1.11.1") (source (origin (method url-fetch) (uri (cran-uri "reticulate" version)) (sha256 (base32 - "0bz3lxbisjwn6cv23090zivpy0bxcncr82g5qja13l37i8xnvqsq")))) + "1cyb92dvv9iibsk28i0gm5hm2xqbsn0y6d67id74c8rhai9y8i9v")))) (build-system r-build-system) (inputs `(("python" ,python))) (propagated-inputs From bbe9421174dfd2f0f55f3ed51a240087245dac11 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:45:57 +0100 Subject: [PATCH 110/194] gnu: r-maptools: Update to 0.9-5. * gnu/packages/cran.scm (r-maptools): Update to 0.9-5. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 811f785cad..6844fd445e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4958,14 +4958,14 @@ simple method for converting between file types.") (define-public r-maptools (package (name "r-maptools") - (version "0.9-4") + (version "0.9-5") (source (origin (method url-fetch) (uri (cran-uri "maptools" version)) (sha256 (base32 - "1753kgyc4kmbb5h6knz5wgvvvj8v77kzm8lz0kwz05m5k3spa24k")))) + "1pbvcn9xfx0hxq1ppbfg9xm5j04q4c15nj983yjmg7dlkzq135ax")))) (build-system r-build-system) (propagated-inputs `(("r-foreign" ,r-foreign) From f5ce1dcce206590010d4e13dcfe90f7825f92d60 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:46:14 +0100 Subject: [PATCH 111/194] gnu: r-zip: Update to 2.0.0. * gnu/packages/cran.scm (r-zip): Update to 2.0.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 6844fd445e..feaec65146 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4879,14 +4879,14 @@ misclassification probabilities of different models.") (define-public r-zip (package (name "r-zip") - (version "1.0.0") + (version "2.0.0") (source (origin (method url-fetch) (uri (cran-uri "zip" version)) (sha256 (base32 - "0rgr9pcdhdq3k8n29h2ircp3ri1ibhrx81gja1y7331v15xyrabg")))) + "0a86x6a2cy0lkx98yljk9acb6q3ksz9y5acfaqnmbvnn77pibg86")))) (build-system r-build-system) (home-page "https://github.com/gaborcsardi/zip") (synopsis "Cross-platform Zip compression") From ea010aa31ef417882192b1cee11b980d8bad9a54 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:46:26 +0100 Subject: [PATCH 112/194] gnu: r-arules: Update to 1.6-3. * gnu/packages/cran.scm (r-arules): Update to 1.6-3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index feaec65146..1c7b517af5 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4784,14 +4784,14 @@ evaluated by the @dfn{Akaike Information Criterion} (AIC).") (define-public r-arules (package (name "r-arules") - (version "1.6-2") + (version "1.6-3") (source (origin (method url-fetch) (uri (cran-uri "arules" version)) (sha256 (base32 - "0vnss6akk3564kbci3h5rq8ylpckz77cgmflly3gn6fki66f7g96")))) + "0dimrq1pz449z0mz9m87nhm5bpc0v789bcc3lghhh97wwi5zah9y")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) From b9b1041324cd122f32acc0cca221f8a6f4d70ca6 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:46:37 +0100 Subject: [PATCH 113/194] gnu: r-fnn: Update to 1.1.3. * gnu/packages/cran.scm (r-fnn): Update to 1.1.3. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1c7b517af5..4091df59bd 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4666,14 +4666,14 @@ multivariate plot methods.") (define-public r-fnn (package (name "r-fnn") - (version "1.1.2.2") + (version "1.1.3") (source (origin (method url-fetch) (uri (cran-uri "FNN" version)) (sha256 (base32 - "09k3k0h9ikbwq6225l7gd0nhimbji722680cr66c8n7zpvxn06mm")))) + "0cllqlnynm5yaj4r64mqyyfc8phkb38rwssq8k8ikgfgr4jklxny")))) (properties `((upstream-name . "FNN"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/FNN") From 8b2c80b8a384f052a268a32754cd62d1ca3ef844 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:46:56 +0100 Subject: [PATCH 114/194] gnu: r-vim: Update to 4.8.0. * gnu/packages/cran.scm (r-vim): Update to 4.8.0. [propagated-inputs]: Add r-ranger. --- gnu/packages/cran.scm | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4091df59bd..b61bc119db 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4628,14 +4628,14 @@ specific S3-method.") (define-public r-vim (package (name "r-vim") - (version "4.7.0") + (version "4.8.0") (source (origin (method url-fetch) (uri (cran-uri "VIM" version)) (sha256 (base32 - "1vjcs5wvjv94ln01d94h9rs4j50d3ky4n26mm3prgh13raylrmnd")))) + "08x4a4yzgp8adgrv7a3666yma4b60n64mcsnvhzmwdy023f4ysrw")))) (properties `((upstream-name . "VIM"))) (build-system r-build-system) (propagated-inputs @@ -4646,6 +4646,7 @@ specific S3-method.") ("r-laeken" ,r-laeken) ("r-mass" ,r-mass) ("r-nnet" ,r-nnet) + ("r-ranger" ,r-ranger) ("r-rcpp" ,r-rcpp) ("r-robustbase" ,r-robustbase) ("r-sp" ,r-sp) From 00fb320392e51b19b4fe8caeaa7b05de9849c552 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:47:12 +0100 Subject: [PATCH 115/194] gnu: r-later: Update to 0.8.0. * gnu/packages/cran.scm (r-later): Update to 0.8.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b61bc119db..4656393904 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4987,14 +4987,14 @@ exchanging spatial objects with other R packages.") (define-public r-later (package (name "r-later") - (version "0.7.5") + (version "0.8.0") (source (origin (method url-fetch) (uri (cran-uri "later" version)) (sha256 (base32 - "0xhwn37makzm85zb6w5acc7svzibxcnz69rks0kxw22vapkxwz1i")))) + "08g503xjxrfxvrzj0cavsrz4m8ykbha64344j1w2r6v17js2hakb")))) (build-system r-build-system) (propagated-inputs `(("r-bh" ,r-bh) From cb40b6eb9bc27d76351092ecfbac5c26b936d735 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:47:34 +0100 Subject: [PATCH 116/194] gnu: r-radiant-data: Update to 0.9.9. * gnu/packages/cran.scm (r-radiant-data): Update to 0.9.9. [propagated-inputs]: Add r-stringi; remove r-summarytools. --- gnu/packages/cran.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4656393904..23dccace97 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4420,14 +4420,14 @@ environment within Shiny.") (define-public r-radiant-data (package (name "r-radiant-data") - (version "0.9.7") + (version "0.9.9") (source (origin (method url-fetch) (uri (cran-uri "radiant.data" version)) (sha256 (base32 - "1f98ahki0kyb27gl55a859zb0lsvk9gddd9f54y767xfs6h89cgk")) + "17mgm0sggh4f7ihqmj9m3996p3pqc7h2cwx6ll1ha3kg5mx0znyn")) (modules '((guix build utils))) (snippet '(begin @@ -4463,7 +4463,7 @@ environment within Shiny.") ("r-shiny" ,r-shiny) ("r-shinyfiles" ,r-shinyfiles) ("r-shinyace" ,r-shinyace) - ("r-summarytools" ,r-summarytools) + ("r-stringi" ,r-stringi) ("r-tibble" ,r-tibble) ("r-tidyr" ,r-tidyr) ("r-writexl" ,r-writexl))) From d8787b3387c9ab65199603ad36f6803d9e9eabc4 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:47:53 +0100 Subject: [PATCH 117/194] gnu: r-ifultools: Update to 2.0-5. * gnu/packages/cran.scm (r-ifultools): Update to 2.0-5. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 23dccace97..2b84af921b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3876,14 +3876,14 @@ provides some missing S-PLUS functionality in R.") (define-public r-ifultools (package (name "r-ifultools") - (version "2.0-4") + (version "2.0-5") (source (origin (method url-fetch) (uri (cran-uri "ifultools" version)) (sha256 (base32 - "0pv2msaa1rmj8csxdclzi2jwg9pfdvh87blj9j3xa3myisglq092")))) + "040kvbczcmmbaiaz0k0pdq9af541pjj6iwzh1a3w4szh9w6b5a3j")))) (build-system r-build-system) (propagated-inputs `(("r-mass" ,r-mass) From 87bb1b8c9e7257a62f60d4497bbeb941eaeea036 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:48:02 +0100 Subject: [PATCH 118/194] gnu: r-metap: Update to 1.1. * gnu/packages/cran.scm (r-metap): Update to 1.1. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2b84af921b..c92f18ab88 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3715,14 +3715,14 @@ automatically.") (define-public r-metap (package (name "r-metap") - (version "1.0") + (version "1.1") (source (origin (method url-fetch) (uri (cran-uri "metap" version)) (sha256 (base32 - "18rzvqfzyk8fn54gjvy2qd21nk9w69j7ihww477ma3f3ab6i982h")))) + "10kv7z8pik5iy374h399vws0ldf41y2nczlwh8axqf9dcwl084i0")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice) From 22777c8657c65986522f600a7efac5c2aa46ca8b Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:48:09 +0100 Subject: [PATCH 119/194] gnu: r-xfun: Update to 0.5. * gnu/packages/cran.scm (r-xfun): Update to 0.5. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c92f18ab88..78e154d912 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3607,14 +3607,14 @@ iVAT).") (define-public r-xfun (package (name "r-xfun") - (version "0.4") + (version "0.5") (source (origin (method url-fetch) (uri (cran-uri "xfun" version)) (sha256 (base32 - "0991ywgc2dsraba91kkj37akhfzhzn02cnz7c88hhdis9kag3pwv")))) + "1wkrapc490r9l9z6mz623zn9ijq64mckc17xg2s7n3s9yaxj98lb")))) (build-system r-build-system) (home-page "https://github.com/yihui/xfun") (synopsis "Miscellaneous functions") From d2cd541cc71d60e81e53eb751d74615ddd148247 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:48:16 +0100 Subject: [PATCH 120/194] gnu: r-mice: Update to 3.4.0. * gnu/packages/cran.scm (r-mice): Update to 3.4.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 78e154d912..c9f93c634a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2957,14 +2957,14 @@ analysis of multiply imputed data sets.") (define-public r-mice (package (name "r-mice") - (version "3.3.0") + (version "3.4.0") (source (origin (method url-fetch) (uri (cran-uri "mice" version)) (sha256 (base32 - "1p0ipbqk5aqdi7iikw3qrjyvdi9sdhpnw1h5mwakwvv0yl0pzbyx")))) + "0rdamj1j9z3kxmi27pc79v6mhh8rgxaxz4xz70ybf8kqh2x66cgm")))) (build-system r-build-system) (propagated-inputs `(("r-broom" ,r-broom) From 532b3598657d5bca5b30d343841a83f6dfffd64c Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:48:23 +0100 Subject: [PATCH 121/194] gnu: r-jomo: Update to 2.6-7. * gnu/packages/cran.scm (r-jomo): Update to 2.6-7. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c9f93c634a..ec2ed399d2 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2884,14 +2884,14 @@ Laplace approximation and adaptive Gauss-Hermite quadrature.") (define-public r-jomo (package (name "r-jomo") - (version "2.6-6") + (version "2.6-7") (source (origin (method url-fetch) (uri (cran-uri "jomo" version)) (sha256 (base32 - "1048qb12cx7fs156jcqzwkfmsjadkgnrqd0krznyxpn873zr9lq2")))) + "0lyvi32aikkvwdj0y2hc13kmmi0cw1icg8z9lcw10l8326sxm0vf")))) (build-system r-build-system) (propagated-inputs `(("r-lme4" ,r-lme4) From 6e4a9b8365cf0502677816490e8c99221859319d Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:48:32 +0100 Subject: [PATCH 122/194] gnu: r-ggsignif: Update to 0.5.0. * gnu/packages/cran.scm (r-ggsignif): Update to 0.5.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ec2ed399d2..b8b207d929 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5263,14 +5263,14 @@ movies, and TV shows.") (define-public r-ggsignif (package (name "r-ggsignif") - (version "0.4.0") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "ggsignif" version)) (sha256 (base32 - "1rn58d7pb3axk6chiihryykrzw76adaa2yiafq4d0j6qbhax78f7")))) + "0z04g5kqdj66fyfxb5d2m7njkqd7idbiy4xgsnxdh5pbh3cr643x")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2))) From 2170a36c3b3c9df4766856bc858cda2ee95aaaec Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:48:40 +0100 Subject: [PATCH 123/194] gnu: r-gower: Update to 0.2.0. * gnu/packages/cran.scm (r-gower): Update to 0.2.0. [native-inputs]: Remove r-knitr. --- gnu/packages/cran.scm | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b8b207d929..a284992b1a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2536,17 +2536,15 @@ multivariate and 5 functional classification problems are included.") (define-public r-gower (package (name "r-gower") - (version "0.1.2") + (version "0.2.0") (source (origin (method url-fetch) (uri (cran-uri "gower" version)) (sha256 (base32 - "1mbrj1lam3jfbby2j32shmmj5cn09zx3rkxbamq7q8sdg39b54gb")))) + "0x16k0nixgbayh3g4didacn0gmnl5fdfxa0l323phphmimyj49zl")))) (build-system r-build-system) - (native-inputs - `(("r-knitr" ,r-knitr))) (home-page "https://github.com/markvanderloo/gower") (synopsis "Gower's distance") (description From 937e15571cbba3372eae150b5b07782f0af5a609 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:48:54 +0100 Subject: [PATCH 124/194] gnu: r-rmysql: Update to 0.10.17. * gnu/packages/cran.scm (r-rmysql): Update to 0.10.17. [native-inputs]: Remove pkg-config. --- gnu/packages/cran.scm | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index a284992b1a..bcf1a3054d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2413,18 +2413,16 @@ dimensioned arrays.") (define-public r-rmysql (package (name "r-rmysql") - (version "0.10.16") + (version "0.10.17") (source (origin (method url-fetch) (uri (cran-uri "RMySQL" version)) (sha256 (base32 - "1gh4b730g2v78jg5iln8fkz808ri2vhnhnw43wzkkjpy53jh48sp")))) + "1xamf99ih44dvaxg5x4ivj0hkqssmabgqd7gh8b8q1srw7yg8kbm")))) (properties `((upstream-name . "RMySQL"))) (build-system r-build-system) - (native-inputs - `(("pkg-config" ,pkg-config))) (inputs `(("mariadb" ,mariadb) ("zlib" ,zlib))) From 59c513422cbea25db4717e4d350e0956ad87d8c9 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:49:09 +0100 Subject: [PATCH 125/194] gnu: r-emdbook: Update to 1.3.11. * gnu/packages/cran.scm (r-emdbook): Update to 1.3.11. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index bcf1a3054d..3fd84d7e0f 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2025,14 +2025,14 @@ classes in the @code{stats4} package.") (define-public r-emdbook (package (name "r-emdbook") - (version "1.3.10") + (version "1.3.11") (source (origin (method url-fetch) (uri (cran-uri "emdbook" version)) (sha256 (base32 - "0880cx6rqm9vgd2zxnd2k0igfl80gy7ak15w36clwlzavab59hmv")))) + "0a515jdzvg87npvrh7md7zp0v5nlz7c2jr7pba5dql6slb0d8j7q")))) (build-system r-build-system) (propagated-inputs `(("r-bbmle" ,r-bbmle) From bef78244de0f315f6b7da242a424b74f47a862c7 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:49:16 +0100 Subject: [PATCH 126/194] gnu: r-haven: Update to 2.1.0. * gnu/packages/cran.scm (r-haven): Update to 2.1.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 3fd84d7e0f..cfab9eceb7 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1028,14 +1028,14 @@ including functions for geolocation and routing.") (define-public r-haven (package (name "r-haven") - (version "2.0.0") + (version "2.1.0") (source (origin (method url-fetch) (uri (cran-uri "haven" version)) (sha256 (base32 - "12qh8nba1dxlsmcihrx126wmjyj8n511k17vqj10lfgvpwq2sydy")))) + "0x5fwc4q2gdxwwp5sxdd6q17jhpisd769y9kv0xgnjcm0cdwz8f0")))) (build-system r-build-system) (inputs `(("zlib" ,zlib))) From e190d9af6c7e8f4421580ca66da3c2b8b53cebdb Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:49:28 +0100 Subject: [PATCH 127/194] gnu: r-proxy: Update to 0.4-23. * gnu/packages/cran.scm (r-proxy): Update to 0.4-23. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index cfab9eceb7..043db92987 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1774,14 +1774,14 @@ plot networks.") (define-public r-proxy (package (name "r-proxy") - (version "0.4-22") + (version "0.4-23") (source (origin (method url-fetch) (uri (cran-uri "proxy" version)) (sha256 (base32 - "0l0ff8irmmvic941is290hd5vszyhaj5nfwna4v3w9c1zk5nr1ma")))) + "17b6qfllqrhzrxqgx7dccffgybnkcria5a68ap5ly3plg04ypm4x")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/proxy") (synopsis "Distance and similarity measures") From e89d54278d7ec206a3ad4ec3c38882709c2013a9 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:49:45 +0100 Subject: [PATCH 128/194] gnu: r-flextable: Update to 0.5.1. * gnu/packages/cran.scm (r-flextable): Update to 0.5.1. [propagated-inputs]: Add r-data-table, r-magick, and r-rlang; remove r-r6 and r-stringr. --- gnu/packages/cran.scm | 11 ++++++----- 1 file changed, 6 insertions(+), 5 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 043db92987..b2937e2bda 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -5919,23 +5919,24 @@ functions.") (define-public r-flextable (package (name "r-flextable") - (version "0.4.6") + (version "0.5.1") (source (origin (method url-fetch) (uri (cran-uri "flextable" version)) (sha256 (base32 - "0fa42dvf0wyl91w4v0rywm3xgw9n03cfyl28ficrv8iabz4k4382")))) + "0arxgal67ahsq8v0zbvc767qadn7lg3f7mmqa9gjjz6sri0y6gsx")))) (build-system r-build-system) (propagated-inputs - `(("r-gdtools" ,r-gdtools) + `(("r-data-table" ,r-data-table) + ("r-gdtools" ,r-gdtools) ("r-htmltools" ,r-htmltools) ("r-knitr" ,r-knitr) + ("r-magick" ,r-magick) ("r-officer" ,r-officer) - ("r-r6" ,r-r6) + ("r-rlang" ,r-rlang) ("r-rmarkdown" ,r-rmarkdown) - ("r-stringr" ,r-stringr) ("r-xml2" ,r-xml2))) (home-page "https://davidgohel.github.io/flextable") (synopsis "Functions for tabular reporting") From 790db519f43e65278fd245dff273b5024c9f0e05 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:50:28 +0100 Subject: [PATCH 129/194] gnu: r-servr: Update to 0.13. * gnu/packages/cran.scm (r-servr): Update to 0.13. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b2937e2bda..1bbdc8660a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -445,13 +445,13 @@ in systems and applications.") (define-public r-servr (package (name "r-servr") - (version "0.11") + (version "0.13") (source (origin (method url-fetch) (uri (cran-uri "servr" version)) (sha256 (base32 - "0yj3p1risf269n25dd56lqv82dsxv6a0aq4bcc1ddn9wv7h2xdfi")))) + "1n5haqkshrxcx557f1k7nrisvq3wak8v370s2r6yv691b8hvbscs")))) (build-system r-build-system) (propagated-inputs `(("r-httpuv" ,r-httpuv) From f544ab3379f23569c8ac499073f2d086e14bfa61 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:50:39 +0100 Subject: [PATCH 130/194] gnu: r-sys: Update to 3.0. * gnu/packages/cran.scm (r-sys): Update to 3.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1bbdc8660a..9d9f735293 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -110,14 +110,14 @@ are not used.") (define-public r-sys (package (name "r-sys") - (version "2.1") + (version "3.0") (source (origin (method url-fetch) (uri (cran-uri "sys" version)) (sha256 (base32 - "10ml2492bdllh6cz2zl192ip0fdgjkkgayggd3ghswsj5gjv5hrh")))) + "1g0q1f56qmp3x5gja19qrmgk3j4d89yp16z1ziv1jn5p4dlmfpxh")))) (build-system r-build-system) (home-page "https://github.com/jeroen/sys") (synopsis "Powerful and reliable tools for running system commands in R") From 8f37f538374c10e404d44ed036fb197a46fcd6f0 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:50:51 +0100 Subject: [PATCH 131/194] gnu: r-readxl: Update to 1.3.0. * gnu/packages/cran.scm (r-readxl): Update to 1.3.0. --- gnu/packages/cran.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 9d9f735293..324753322e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -337,14 +337,14 @@ that.") (define-public r-readxl (package (name "r-readxl") - (version "1.2.0") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "readxl" version)) (sha256 (base32 - "1mwm389skl4ahcwsmhvx31pjkrn6y9igpnhsczwg6yza886q7j19")))) + "1p7snd8lznyinp0nyg6bsqwn9alh3pnnj77bfg865ingdl1d2yc3")))) (build-system r-build-system) (propagated-inputs `(("r-cellranger" ,r-cellranger) From 20662a30201d638594a8b9d1878cd3cce467cda7 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:51:00 +0100 Subject: [PATCH 132/194] gnu: r-ggmap: Update to 3.0.0. * gnu/packages/cran.scm (r-ggmap): Update to 3.0.0. [propagated-inputs]: Add r-bitops, r-dplyr, r-glue, r-httr, r-magrittr, r-purrr, r-stringr, r-tibble, and r-tidyr; remove r-geosphere, r-mapproj, r-proto, and r-reshape2. --- gnu/packages/cran.scm | 21 +++++++++++++-------- 1 file changed, 13 insertions(+), 8 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 324753322e..5bd5c60d49 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -995,28 +995,33 @@ applications. That is, compute distances and related measures for angular (define-public r-ggmap (package (name "r-ggmap") - (version "2.6.2") + (version "3.0.0") (source (origin (method url-fetch) (uri (cran-uri "ggmap" version)) (sha256 (base32 - "144x6ycb2c3fvy5c68ww53m6gzi6kfvas7cpbn071z08n4xgb72f")))) + "13dmzl6z62pzjiffilarkji46vy0sacxa8a7mhrhc3biq3ylzhln")))) (build-system r-build-system) (propagated-inputs - `(("r-digest" ,r-digest) - ("r-geosphere" ,r-geosphere) + `(("r-bitops" ,r-bitops) + ("r-digest" ,r-digest) + ("r-dplyr" ,r-dplyr) ("r-ggplot2" ,r-ggplot2) + ("r-glue" ,r-glue) + ("r-httr" ,r-httr) ("r-jpeg" ,r-jpeg) - ("r-mapproj" ,r-mapproj) + ("r-magrittr" ,r-magrittr) ("r-plyr" ,r-plyr) ("r-png" ,r-png) - ("r-proto" ,r-proto) - ("r-reshape2" ,r-reshape2) + ("r-purrr" ,r-purrr) ("r-rgooglemaps" ,r-rgooglemaps) ("r-rjson" ,r-rjson) - ("r-scales" ,r-scales))) + ("r-scales" ,r-scales) + ("r-stringr" ,r-stringr) + ("r-tibble" ,r-tibble) + ("r-tidyr" ,r-tidyr))) (home-page "https://github.com/dkahle/ggmap") (synopsis "Spatial visualization with ggplot2") (description "This package provides a collection of functions to visualize From d6234620ace1863d8102b065311ef3d94e0931da Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 7 Mar 2019 23:55:24 +0100 Subject: [PATCH 133/194] etc: snippets: Prefill package name and version. * etc/snippets/text-mode/guix-commit-message-update-package: Extract package name and version from git diff output. --- .../guix-commit-message-update-package | 19 ++++++++++++++++++- 1 file changed, 18 insertions(+), 1 deletion(-) diff --git a/etc/snippets/text-mode/guix-commit-message-update-package b/etc/snippets/text-mode/guix-commit-message-update-package index 79fcf7c6e3..2cdb6ea28d 100644 --- a/etc/snippets/text-mode/guix-commit-message-update-package +++ b/etc/snippets/text-mode/guix-commit-message-update-package @@ -3,7 +3,24 @@ # key: update # condition: git-commit-mode # -- -gnu: $1: Update to $2. + +gnu: ${1:`(with-temp-buffer + (magit-git-wash #'magit-diff-wash-diffs + "diff" "--staged") + (beginning-of-buffer) + (when (search-forward "(define-public " nil 'noerror) + (thing-at-point 'sexp 'no-properties)))`}: Update to ${2:`(with-temp-buffer + (magit-git-wash #'magit-diff-wash-diffs + "diff" "--staged") + (beginning-of-buffer) + (search-forward "name" nil 'noerror) + (search-forward "+" nil 'noerror) ; first change + (when (and (search-forward "version " nil 'noerror) + (looking-at-p "\"")) + (let ((end (save-excursion (search-forward "\")" nil 'noerror)))) + (when end + (forward-char) + (buffer-substring-no-properties (point) (- end 2))))))`}. * `(car (magit-staged-files))` ($1): Update to $2.$0 `(mapconcat (lambda (file) (concat "* " file)) (cdr (magit-staged-files)) "\n")` \ No newline at end of file From 933dad9156bfb05fc264fda01de351839403316b Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 Mar 2019 00:04:33 +0100 Subject: [PATCH 134/194] gnu: Add mruby. * gnu/packages/ruby.scm (mruby): New variable. --- gnu/packages/ruby.scm | 61 +++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 61 insertions(+) diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm index 66eb2607e6..818553848d 100644 --- a/gnu/packages/ruby.scm +++ b/gnu/packages/ruby.scm @@ -34,6 +34,7 @@ #:use-module ((guix licenses) #:prefix license:) #:use-module (gnu packages) #:use-module (gnu packages base) + #:use-module (gnu packages bison) #:use-module (gnu packages check) #:use-module (gnu packages compression) #:use-module (gnu packages crypto) @@ -160,6 +161,66 @@ a focus on simplicity and productivity.") (delete-file-recursively "ext/fiddle/libffi-3.2.1") #t)))))) +(define-public mruby + (package + (name "mruby") + (version "2.0.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/mruby/mruby.git") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1r6w1asjshff43ymdwa6xmrkggza99mi2kw88k7ic6ag2j81hcj5")))) + (build-system gnu-build-system) + (arguments + `(#:test-target "test" + #:phases + (modify-phases %standard-phases + (delete 'configure) + (add-after 'unpack 'enable-verbose-tests + (lambda _ + (substitute* "Makefile" + (("ruby ./minirake" m) + (string-append m " --verbose"))) + #t)) + (add-after 'unpack 'disable-broken-tests + (lambda _ + (substitute* "mrbgems/mruby-io/test/io.rb" + (("assert\\('IO.popen.+$" m) + (string-append m "skip \"Hangs in the Guix build environment\"\n")) + (("assert\\('IO#isatty.+$" m) + (string-append m "skip \"Disable for Guix; there is no /dev/tty\"\n")) + ;; This one is really weird. The *expected* output is all wrong. + (("assert\\('`cmd`.*" m) + (string-append m "skip \"Disable for Guix\"\n")) + (("echo foo") + (string-append (which "echo") " foo"))) + #t)) + ;; There is no install target + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin")) + (lib (string-append out "/lib"))) + (mkdir-p bin) + (copy-recursively "build/host/bin" bin) + (mkdir-p lib) + (copy-recursively "build/host/lib" lib)) + #t))))) + (native-inputs + `(("ruby" ,ruby) + ("bison" ,bison))) + (home-page "https://github.com/mruby/mruby") + (synopsis "Lightweight Ruby") + (description "mruby is the lightweight implementation of the Ruby +language. Its syntax is Ruby 1.9 compatible. mruby can be linked and +embedded within your application.") + (license license:expat))) + (define-public ruby-commander (package (name "ruby-commander") From 95803946c7dbdff88db09fa5fe98e70d607712a7 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 Mar 2019 00:17:30 +0100 Subject: [PATCH 135/194] etc: snippets: Prefill package name. * etc/snippets/text-mode/guix-commit-message-add-package: Extract package name from diff. --- etc/snippets/text-mode/guix-commit-message-add-package | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/etc/snippets/text-mode/guix-commit-message-add-package b/etc/snippets/text-mode/guix-commit-message-add-package index 1aebe8a763..0dff2cbcf5 100644 --- a/etc/snippets/text-mode/guix-commit-message-add-package +++ b/etc/snippets/text-mode/guix-commit-message-add-package @@ -3,6 +3,11 @@ # key: add # condition: git-commit-mode # -- -gnu: Add $1. +gnu: Add ${1:`(with-temp-buffer + (magit-git-wash #'magit-diff-wash-diffs + "diff" "--staged") + (beginning-of-buffer) + (when (search-forward "(define-public " nil 'noerror) + (thing-at-point 'sexp 'no-properties)))`}. * `(car (magit-staged-files))` ($1): New variable. \ No newline at end of file From 2fa1a3a8089af996496705ee1fa1960af94736df Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Fri, 8 Mar 2019 00:28:35 +0100 Subject: [PATCH 136/194] gnu: dovecot: Don't use NAME in source URI. * gnu/packages/mail.scm (dovecot)[source]: Hard-code NAME. --- gnu/packages/mail.scm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm index cdfb72c85a..62bdc16024 100644 --- a/gnu/packages/mail.scm +++ b/gnu/packages/mail.scm @@ -1288,7 +1288,7 @@ facilities for checking incoming mail.") (method url-fetch) (uri (string-append "https://www.dovecot.org/releases/" (version-major+minor version) "/" - name "-" version ".tar.gz")) + "dovecot-" version ".tar.gz")) (sha256 (base32 "01xa8d08c0j51w5kmqb3vnzrvh17hkzx5a5p7fb5hgn3wln3x1xq")))) From 13b1fb5c92a60c7fec3f256f51ee2cbc263354d1 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Fri, 8 Mar 2019 01:09:29 +0100 Subject: [PATCH 137/194] gnu: dovecot: Update to 2.3.5. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * gnu/packages/mail.scm (dovecot): Update to 2.3.5. [arguments]: Patch more tests in ‘patch-file-names’ phase, renamed from ‘patch-other-file-names’. --- gnu/packages/mail.scm | 11 +++++++---- 1 file changed, 7 insertions(+), 4 deletions(-) diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm index 62bdc16024..69fee43bb9 100644 --- a/gnu/packages/mail.scm +++ b/gnu/packages/mail.scm @@ -1282,7 +1282,7 @@ facilities for checking incoming mail.") (define-public dovecot (package (name "dovecot") - (version "2.3.4.1") + (version "2.3.5") (source (origin (method url-fetch) @@ -1290,8 +1290,7 @@ facilities for checking incoming mail.") (version-major+minor version) "/" "dovecot-" version ".tar.gz")) (sha256 - (base32 - "01xa8d08c0j51w5kmqb3vnzrvh17hkzx5a5p7fb5hgn3wln3x1xq")))) + (base32 "1zxa9banams9nmk99sf1rqahr11cdqxhwi7hyz3ddxqidpn15qdz")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config))) @@ -1315,7 +1314,7 @@ facilities for checking incoming mail.") "pkgsysconfdir = /tmp/etc")) #t)) (add-after - 'unpack 'patch-other-file-names + 'unpack 'patch-file-names (lambda _ (substitute* "src/lib-program-client/test-program-client-local.c" @@ -1325,6 +1324,10 @@ facilities for checking incoming mail.") (("/bin/sh") (which "bash")) (("head") (which "head")) (("sleep") (which "sleep"))) + (substitute* + (list "src/lib-smtp/test-bin/sendmail-exit-1.sh" + "src/lib-smtp/test-bin/sendmail-success.sh") + (("cat") (which "cat"))) #t))))) (home-page "https://www.dovecot.org") (synopsis "Secure POP3/IMAP server") From 792d3ed7eb4fc5dadf207e99394f1592590f800b Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Thu, 7 Mar 2019 16:40:33 +0100 Subject: [PATCH 138/194] gnu: man-pages: Update to 5.00. * gnu/packages/man.scm (man-pages): Update to 5.00. [source]: Re-format. --- gnu/packages/man.scm | 25 +++++++++++-------------- 1 file changed, 11 insertions(+), 14 deletions(-) diff --git a/gnu/packages/man.scm b/gnu/packages/man.scm index cd8522ae7e..f8ee3883a1 100644 --- a/gnu/packages/man.scm +++ b/gnu/packages/man.scm @@ -161,20 +161,17 @@ the traditional flat-text whatis databases.") (define-public man-pages (package (name "man-pages") - (version "4.16") - (source (origin - (method url-fetch) - (uri - (list - (string-append - "mirror://kernel.org/linux/docs/man-pages/man-pages-" - version ".tar.xz") - (string-append - "mirror://kernel.org/linux/docs/man-pages/Archive/" - "man-pages-" version ".tar.xz"))) - (sha256 - (base32 - "1d2d6llazg3inwjiz22cn46mbm5ydpbyh9qb55z4j3nm4w6wrzs7")))) + (version "5.00") + (source + (origin + (method url-fetch) + (uri + (list (string-append "mirror://kernel.org/linux/docs/man-pages/" + "man-pages-" version ".tar.xz") + (string-append "mirror://kernel.org/linux/docs/man-pages/Archive/" + "man-pages-" version ".tar.xz"))) + (sha256 + (base32 "006rcqhs4ay9q8wip2kbgk3065gwvfbzrqgv2dsydwvcnwv50bss")))) (build-system gnu-build-system) (arguments '(#:phases (modify-phases %standard-phases (delete 'configure)) From 8972989e10ac6f10364a1b6cf81a9ac15383fa57 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 Mar 2019 00:38:46 +0100 Subject: [PATCH 139/194] gnu: r-dexseq: Update to 1.28.2. * gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.2. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 2a7d334b19..96dc6c2904 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6416,14 +6416,14 @@ distribution.") (define-public r-dexseq (package (name "r-dexseq") - (version "1.28.1") + (version "1.28.2") (source (origin (method url-fetch) (uri (bioconductor-uri "DEXSeq" version)) (sha256 (base32 - "0g5w9bn2nb3m670hkcsnhfvvkza2318z9irlhhwhb3n8rdzlsdym")))) + "134znafy7hn38rp4nia4pglz56fz6nbkxrf7z2k1sajfsgxa1hs6")))) (properties `((upstream-name . "DEXSeq"))) (build-system r-build-system) (propagated-inputs From fff11bccc6a2e1d7dad57ec3138f9b1dbbbf43e0 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 Mar 2019 00:38:59 +0100 Subject: [PATCH 140/194] gnu: r-genomeinfodb: Update to 1.18.2. * gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.18.2. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 96dc6c2904..8a39cfb62e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7239,13 +7239,13 @@ ID and species. It is used by functions in the GenomeInfoDb package.") (define-public r-genomeinfodb (package (name "r-genomeinfodb") - (version "1.18.1") + (version "1.18.2") (source (origin (method url-fetch) (uri (bioconductor-uri "GenomeInfoDb" version)) (sha256 (base32 - "049pyzr8iszv3g7wdqf3pz7vg7bzd450c20ln6fgw4g5xnkkr10s")))) + "07bm35jcczpyxap0b3gky4b28z38z423sngzsm19d9krjxr76b5p")))) (properties `((upstream-name . "GenomeInfoDb"))) (build-system r-build-system) From cd43ae3fd6cf11442577e5f46cd4e5a0677e3363 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 Mar 2019 00:39:07 +0100 Subject: [PATCH 141/194] gnu: r-variantannotation: Update to 1.28.11. * gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.11. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 8a39cfb62e..b5ddb5cca0 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7295,13 +7295,13 @@ CAGE.") (define-public r-variantannotation (package (name "r-variantannotation") - (version "1.28.10") + (version "1.28.11") (source (origin (method url-fetch) (uri (bioconductor-uri "VariantAnnotation" version)) (sha256 (base32 - "0kxf583cgkdz1shi85r0mpnfxmzi7s5f6srd1czbdl2iibvrm8jn")))) + "19bxi5b9fzqdjadb8bfm8xsgi6nvrwbgn1xcpk59bnmv9vzjkwrh")))) (properties `((upstream-name . "VariantAnnotation"))) (inputs From 58209b1e21609e09fd79274c5a776519dfc5ef98 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 Mar 2019 00:39:13 +0100 Subject: [PATCH 142/194] gnu: r-biocparallel: Update to 1.16.6. * gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.16.6. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b5ddb5cca0..a1d4a1eac1 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7499,13 +7499,13 @@ powerful online queries from gene annotation to database mining.") (define-public r-biocparallel (package (name "r-biocparallel") - (version "1.16.5") + (version "1.16.6") (source (origin (method url-fetch) (uri (bioconductor-uri "BiocParallel" version)) (sha256 (base32 - "1164dk0fajb2vrkfpcjs11055qf1cs4vvbnq0aqdaaf2p4lyx41l")))) + "1iv2xzm6lz371z0llhcxl8hmc5jfw0hjwnf1qc8d7jk9djgcaks2")))) (properties `((upstream-name . "BiocParallel"))) (build-system r-build-system) From 57f40dc220e5314d60412713344e3bb65b54caea Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 Mar 2019 00:39:20 +0100 Subject: [PATCH 143/194] gnu: r-rsamtools: Update to 1.34.1. * gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.34.1. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a1d4a1eac1..e671d53a2e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7550,13 +7550,13 @@ biological sequences or sets of sequences.") (define-public r-rsamtools (package (name "r-rsamtools") - (version "1.34.0") + (version "1.34.1") (source (origin (method url-fetch) (uri (bioconductor-uri "Rsamtools" version)) (sha256 (base32 - "01v4bjhj2i126pwyk0v9lvmfp2ih495xsq903k3xa2z24bjxphbi")))) + "02paq7klabdkaf1b8pmmbpmyqsj3yncnfsz62rgka6r4dpsilwk9")))) (properties `((upstream-name . "Rsamtools"))) (build-system r-build-system) From d493043dafd8021f313660a0baa7352d94bede55 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 Mar 2019 00:39:26 +0100 Subject: [PATCH 144/194] gnu: r-rtracklayer: Update to 1.42.2. * gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.42.2. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index e671d53a2e..182bf457f3 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7689,13 +7689,13 @@ alignments.") (define-public r-rtracklayer (package (name "r-rtracklayer") - (version "1.42.1") + (version "1.42.2") (source (origin (method url-fetch) (uri (bioconductor-uri "rtracklayer" version)) (sha256 (base32 - "1ycmcxvgvszvjv75hlmg0i6pq8i7r8720vgmfayb905s9l6j82x6")))) + "1c76g6h9lx2nm7dvb2zp9dmrpk3vanx3zaz6q9clggpj7yj5lmjd")))) (build-system r-build-system) (arguments `(#:phases From d86b9eca565eab14b85fb7b2fbf5ee9b68ad09be Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 Mar 2019 00:39:32 +0100 Subject: [PATCH 145/194] gnu: r-genomicfeatures: Update to 1.34.4. * gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.4. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 182bf457f3..be2faf207b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7736,13 +7736,13 @@ as well as query and modify the browser state, such as the current viewport.") (define-public r-genomicfeatures (package (name "r-genomicfeatures") - (version "1.34.2") + (version "1.34.4") (source (origin (method url-fetch) (uri (bioconductor-uri "GenomicFeatures" version)) (sha256 (base32 - "0qs94b0ywrjyc9m1jykrbch3lb07576m508dikvx18vwn304mban")))) + "09gc1vbqszrr3ixv4hsfan2l18fcf3gg58783mrfwjv6ci9c4w0d")))) (properties `((upstream-name . "GenomicFeatures"))) (build-system r-build-system) From 53e7f028edf7e7156a87d588a3263cc14be4480b Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 Mar 2019 00:39:39 +0100 Subject: [PATCH 146/194] gnu: r-rhtslib: Update to 1.14.1. * gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.14.1. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index be2faf207b..bfde1f05bf 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8100,14 +8100,14 @@ secondary structure and comparative analysis in R.") (define-public r-rhtslib (package (name "r-rhtslib") - (version "1.14.0") + (version "1.14.1") (source (origin (method url-fetch) (uri (bioconductor-uri "Rhtslib" version)) (sha256 (base32 - "1h4q54f8za3aaxgy186zf2165sar5c3cgxkk44lq5hzx5pxkl5wn")))) + "13fv78sk5g0gqfl3ks3rps3zc1k66a4lzxvgn36r7ix43yxk7hnr")))) (properties `((upstream-name . "Rhtslib"))) (build-system r-build-system) (propagated-inputs From d3713237c5a57fdd0a9a75e9692946f975b7cbd7 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 Mar 2019 00:39:53 +0100 Subject: [PATCH 147/194] gnu: r-annotationhub: Update to 2.14.4. * gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.4. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index bfde1f05bf..c26b8af215 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9512,14 +9512,14 @@ Shiny-based display methods for Bioconductor objects.") (define-public r-annotationhub (package (name "r-annotationhub") - (version "2.14.2") + (version "2.14.4") (source (origin (method url-fetch) (uri (bioconductor-uri "AnnotationHub" version)) (sha256 (base32 - "17fgrvcnbii9siv5rq5j09bxhqffx47f6jf10418qvr7hh61ic1g")))) + "18v2mk395svq3c19wzi6bjwjfnmrvjqkzmj7cmaji7rx4xdgz6ck")))) (properties `((upstream-name . "AnnotationHub"))) (build-system r-build-system) (propagated-inputs From 101dcc29d35b032ab62b1e7320b5d7dcd6af02b1 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 Mar 2019 00:40:03 +0100 Subject: [PATCH 148/194] gnu: r-ensembldb: Update to 2.6.7. * gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.7. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c26b8af215..495cbf4ae9 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9722,14 +9722,14 @@ originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE 7(2): (define-public r-ensembldb (package (name "r-ensembldb") - (version "2.6.3") + (version "2.6.7") (source (origin (method url-fetch) (uri (bioconductor-uri "ensembldb" version)) (sha256 (base32 - "0kzdsfk6mdwlp57sw4j2cf7lx5nc67v5j0xr3iag9kzmgikaq1lb")))) + "1wqq0m1fgvgkzq5zr2s9cj2s7qkg9lx3dwwsqixzs5fn52p4dn7f")))) (build-system r-build-system) (propagated-inputs `(("r-annotationdbi" ,r-annotationdbi) From 6453d7aecc38158011e9a10d038d21a92f1531a5 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 Mar 2019 00:40:10 +0100 Subject: [PATCH 149/194] gnu: r-gviz: Update to 1.26.5. * gnu/packages/bioinformatics.scm (r-gviz): Update to 1.26.5. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 495cbf4ae9..d7be91cc2c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10134,14 +10134,14 @@ family of feature/genome hypotheses.") (define-public r-gviz (package (name "r-gviz") - (version "1.26.4") + (version "1.26.5") (source (origin (method url-fetch) (uri (bioconductor-uri "Gviz" version)) (sha256 (base32 - "0jvcivgw0ahv2rjadxmrww76xambhf7silczmh38nn4yn4qw6w9y")))) + "1dpkcaar7qgzg3vgafvkplprhwmhzpb7ph009kr6ajm36hx4z81c")))) (properties `((upstream-name . "Gviz"))) (build-system r-build-system) (propagated-inputs From 183b6575e7f262470a5da2566d33b12d2968c1ca Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 Mar 2019 09:13:19 +0100 Subject: [PATCH 150/194] gnu: r-mzr: Update to 2.16.2. * gnu/packages/bioinformatics.scm (r-mzr): Update to 2.16.2. [inputs]: Replace "boost" with "boost-for-mysql". --- gnu/packages/bioinformatics.scm | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d7be91cc2c..ced948a5d1 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9048,14 +9048,14 @@ proteomics packages.") (define-public r-mzr (package (name "r-mzr") - (version "2.16.1") + (version "2.16.2") (source (origin (method url-fetch) (uri (bioconductor-uri "mzR" version)) (sha256 (base32 - "0mlwg646k49klxrznckzfv54a9mz6irj42fqpaaa0xjm6cw2lwaa")) + "19fn58zl59kd0hsjjc6y975y9187nfls0028a4k3v0s9wfg5b3vn")) (modules '((guix build utils))) (snippet '(begin @@ -9076,7 +9076,8 @@ proteomics packages.") -lboost_iostreams -lboost_thread -lboost_filesystem -lboost_chrono\n"))) #t))))) (inputs - `(("boost" ,boost) ; use this instead of the bundled boost sources + `(;; XXX Boost 1.69 will not work here. + ("boost" ,boost-for-mysql) ; use this instead of the bundled boost sources ("zlib" ,zlib))) (propagated-inputs `(("r-biobase" ,r-biobase) From daeb3cd98c6771b2e305d88de40aa833e772d181 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 Mar 2019 09:30:00 +0100 Subject: [PATCH 151/194] gnu: r-genelendatabase: Update to 1.18.0. * gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.18.0. --- gnu/packages/bioconductor.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1d36910637..8df065a60c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -524,7 +524,7 @@ by UCSC (hg19, February 2009) and stored in Biostrings objects.") (define-public r-genelendatabase (package (name "r-genelendatabase") - (version "1.16.0") + (version "1.18.0") (source (origin (method url-fetch) @@ -535,7 +535,7 @@ by UCSC (hg19, February 2009) and stored in Biostrings objects.") "/geneLenDataBase_" version ".tar.gz")) (sha256 (base32 - "07mmmn53kb7v14msc13dsbm8ghssbvwcrhifrk15hn37bw2p4ja5")))) + "03gm4pvsfascx7kjg0jycpf4f572mja68wwmwigs390vbmawyb4a")))) (properties `((upstream-name . "geneLenDataBase"))) (build-system r-build-system) From 75f0bda71a28c80922b59766f94bc2f874ce7891 Mon Sep 17 00:00:00 2001 From: Rutger Helling Date: Fri, 8 Mar 2019 11:48:18 +0100 Subject: [PATCH 152/194] gnu: flatpak: Add more dependencies. * gnu/packages/package-management.scm (flatpak)[propagated-inputs]: Add "glib-networking", "gnupg" and "gsettings-desktop-schemas". --- gnu/packages/package-management.scm | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm index dc864a6116..1244cf2fc3 100644 --- a/gnu/packages/package-management.scm +++ b/gnu/packages/package-management.scm @@ -1034,6 +1034,10 @@ the bootloader configuration.") ("gobject-introspection" ,gobject-introspection) ("libcap" ,libcap) ("pkg-config" ,pkg-config))) + (propagated-inputs `(("glib-networking" ,glib-networking) + ("gnupg" ,gnupg) + ("gsettings-desktop-schemas" + ,gsettings-desktop-schemas))) (inputs `(("appstream-glib" ,appstream-glib) ("bubblewrap" ,bubblewrap) ("dconf" ,dconf) From fb0aeaaceafd0e748d3720d8d8c05bfc5c8c47cc Mon Sep 17 00:00:00 2001 From: Vagrant Cascadian Date: Thu, 7 Mar 2019 21:50:58 +0000 Subject: [PATCH 153/194] gnu: u-boot: Remove openssl input. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Fixes . * gnu/packages/bootloaders (u-boot): Remove openssl from native-inputs. (u-boot-tools): Disable FIT_SIGNATURES in tests. Signed-off-by: Ludovic Courtès --- gnu/packages/bootloaders.scm | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bootloaders.scm b/gnu/packages/bootloaders.scm index b0617f452a..15953ab75e 100644 --- a/gnu/packages/bootloaders.scm +++ b/gnu/packages/bootloaders.scm @@ -391,7 +391,6 @@ tree binary files. These are board description files used by Linux and BSD.") ("dtc" ,dtc) ("flex" ,flex) ("lz4" ,lz4) - ("openssl" ,openssl) ("python-2" ,python-2) ("python2-coverage" ,python2-coverage) ("python2-pytest" ,python2-pytest) @@ -440,9 +439,14 @@ also initializes the boards (RAM etc).") (("def test_ctrl_c") "@pytest.mark.skip(reason='Guix has problems with SIGINT') def test_ctrl_c")) - ;; This test requires a sound system, which is un-used in u-boot-tools. (for-each (lambda (file) (substitute* file + ;; Disable signatures, due to GPL/Openssl + ;; license incompatibilities. See + ;; https://bugs.gnu.org/34717 for details. + (("CONFIG_FIT_SIGNATURE=y") "CONFIG_FIT_SIGNATURE=n") + ;; This test requires a sound system, which is un-used + ;; in u-boot-tools. (("CONFIG_SOUND=y") "CONFIG_SOUND=n"))) (find-files "configs" "sandbox_.*defconfig$")) #t)) From 910aaa3b8646b6dfea5cab6ed8da3fc549a2dd70 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ludovic=20Court=C3=A8s?= Date: Fri, 8 Mar 2019 11:47:00 +0100 Subject: [PATCH 154/194] doc: Document references. Suggested by "pelzflorian (Florian Pelz)" . Fixes . * doc/guix.texi (Derivations): Document references. --- doc/guix.texi | 17 +++++++++++++++-- 1 file changed, 15 insertions(+), 2 deletions(-) diff --git a/doc/guix.texi b/doc/guix.texi index 0f325fb542..11ce9d6f62 100644 --- a/doc/guix.texi +++ b/doc/guix.texi @@ -6238,8 +6238,11 @@ The outputs of the derivation---derivations produce at least one file or directory in the store, but may produce more. @item -The inputs of the derivations, which may be other derivations or plain -files in the store (patches, build scripts, etc.) +@cindex build-time dependencies +@cindex dependencies, build-time +The inputs of the derivations---i.e., its build-time dependencies---which may +be other derivations or plain files in the store (patches, build scripts, +etc.) @item The system type targeted by the derivation---e.g., @code{x86_64-linux}. @@ -6270,6 +6273,16 @@ of a fixed-output derivation are independent of its inputs---e.g., a source code download produces the same result regardless of the download method and tools being used. +@cindex references +@cindex run-time dependencies +@cindex dependencies, run-time +The outputs of derivations---i.e., the build results---have a set of +@dfn{references}, as reported by the @code{references} RPC or the +@command{guix gc --references} command (@pxref{Invoking guix gc}). References +are the set of run-time dependencies of the build results. References are a +subset of the inputs of the derivation; this subset is automatically computed +by the build daemon by scanning all the files in the outputs. + The @code{(guix derivations)} module provides a representation of derivations as Scheme objects, along with procedures to create and otherwise manipulate derivations. The lowest-level primitive to create From 4035fcba93aaf551f4b5698045f025aa61287e17 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ludovic=20Court=C3=A8s?= Date: Fri, 8 Mar 2019 12:25:25 +0100 Subject: [PATCH 155/194] channels: Do not fail when the inferior lacks 'guix repl'. Fixes . Reported by Martin Flack . Previously we'd fail to build the package cache for old versions of Guix that lack 'guix repl'. Now we simply ignore the issue and keep going without a cache. * guix/inferior.scm (gexp->derivation-in-inferior): Add #:silent-failure? and honor it. [drop-extra-keyword]: New procedure. Use it. * guix/channels.scm (package-cache-file): Pass #:silent-failure? #t. --- guix/channels.scm | 6 ++++++ guix/inferior.scm | 25 ++++++++++++++++++++++--- 2 files changed, 28 insertions(+), 3 deletions(-) diff --git a/guix/channels.scm b/guix/channels.scm index 96d62ce062..9658cf9393 100644 --- a/guix/channels.scm +++ b/guix/channels.scm @@ -477,6 +477,12 @@ be used as a profile hook." (gexp->derivation-in-inferior "guix-package-cache" build profile + + ;; If the Guix in PROFILE is too old and + ;; lacks 'guix repl', don't build the cache + ;; instead of failing. + #:silent-failure? #t + #:properties '((type . profile-hook) (hook . package-cache)) #:local-build? #t))) diff --git a/guix/inferior.scm b/guix/inferior.scm index 027418a98d..63c95141d7 100644 --- a/guix/inferior.scm +++ b/guix/inferior.scm @@ -513,10 +513,15 @@ PACKAGE must be live." (inferior-package->derivation package system #:target target)) (define* (gexp->derivation-in-inferior name exp guix + #:key silent-failure? + #:allow-other-keys #:rest rest) "Return a derivation that evaluates EXP with GUIX, an instance of Guix as returned for example by 'channel-instances->derivation'. Other arguments are -passed as-is to 'gexp->derivation'." +passed as-is to 'gexp->derivation'. + +When SILENT-FAILURE? is true, create an empty output directory instead of +failing when GUIX is too old and lacks the 'guix repl' command." (define script ;; EXP wrapped with a proper (set! %load-path …) prologue. (scheme-file "inferior-script.scm" exp)) @@ -539,9 +544,23 @@ passed as-is to 'gexp->derivation'." (write `(primitive-load #$script) pipe) (unless (zero? (close-pipe pipe)) - (error "inferior failed" #+guix))))) + (if #$silent-failure? + (mkdir #$output) + (error "inferior failed" #+guix)))))) - (apply gexp->derivation name trampoline rest)) + (define (drop-extra-keyword lst) + (let loop ((lst lst) + (result '())) + (match lst + (() + (reverse result)) + ((#:silent-failure? _ . rest) + (loop rest result)) + ((kw value . tail) + (loop tail (cons* value kw result)))))) + + (apply gexp->derivation name trampoline + (drop-extra-keyword rest))) ;;; From fc7d6bc60d0ee85017217b528cb2f46342141c11 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Fri, 8 Mar 2019 15:25:57 +0200 Subject: [PATCH 156/194] gnu: crawl: Build with python3-wrapper. * gnu/packages/games.scm (crawl)[native-inputs replace python with python-wrapper. [arguments]: Remove custom 'patch-python phase. --- gnu/packages/games.scm | 7 +------ 1 file changed, 1 insertion(+), 6 deletions(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 3752c6e022..1742454729 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -4437,7 +4437,7 @@ fish. The whole game is accompanied by quiet, comforting music.") `(("bison" ,bison) ("flex" ,flex) ("perl" ,perl) - ("python" ,python) + ("python" ,python-wrapper) ("python-pyyaml" ,python-pyyaml) ("pkg-config" ,pkg-config))) (arguments @@ -4454,11 +4454,6 @@ fish. The whole game is accompanied by quiet, comforting music.") "-Csource")) #:phases (modify-phases %standard-phases - (add-after 'unpack 'patch-python - (lambda* (#:key inputs #:allow-other-keys) - (substitute* "source/util/species-gen.py" - (("python") "python3")) - #t)) (delete 'configure) (replace 'check (lambda* (#:key inputs outputs make-flags #:allow-other-keys) From b89284407fd5d865ca7cc8622459692cec9297cf Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Fri, 8 Mar 2019 15:27:29 +0200 Subject: [PATCH 157/194] gnu: crawl: Don't assume system architecture. This allows crawl to build on non-Intel architectures. * gnu/packages/games.scm (crawl)[arguments]: Add a custom phase to remove x86* specific CFLAGS. --- gnu/packages/games.scm | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 1742454729..9468802ea2 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -4454,6 +4454,11 @@ fish. The whole game is accompanied by quiet, comforting music.") "-Csource")) #:phases (modify-phases %standard-phases + (add-after 'unpack 'patch-flags + (lambda _ + (substitute* "source/Makefile" + (("-mfpmath=sse -msse2") "")) + #t)) (delete 'configure) (replace 'check (lambda* (#:key inputs outputs make-flags #:allow-other-keys) From 606c19878867ada90e40a46cf18194a0e1408945 Mon Sep 17 00:00:00 2001 From: Efraim Flashner Date: Fri, 8 Mar 2019 15:36:31 +0200 Subject: [PATCH 158/194] gnu: crawl: Find all the included headers. * gnu/packages/games.scm (crawl)[arguments]: Add a custom phase to change the path for some headers. --- gnu/packages/games.scm | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 9468802ea2..0d50f55a75 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -4459,6 +4459,11 @@ fish. The whole game is accompanied by quiet, comforting music.") (substitute* "source/Makefile" (("-mfpmath=sse -msse2") "")) #t)) + (add-after 'unpack 'find-SDL-image + (lambda _ + (substitute* "source/windowmanager-sdl.cc" + (("SDL_image.h") "SDL2/SDL_image.h")) + #t)) (delete 'configure) (replace 'check (lambda* (#:key inputs outputs make-flags #:allow-other-keys) From eb6ef893e8126d4f6f0cb571df2d0e75f454d65f Mon Sep 17 00:00:00 2001 From: Danny Milosavljevic Date: Fri, 8 Mar 2019 19:33:04 +0100 Subject: [PATCH 159/194] gnu: fc-host-tools: Update to 10. * gnu/packages/embedded.scm (fc-host-tools): Update to 10. [arguments]<:make-flags>: Change INSTBIN to INSTALL_PREFIX. --- gnu/packages/embedded.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/embedded.scm b/gnu/packages/embedded.scm index 990aa05dd8..5ea2b17197 100644 --- a/gnu/packages/embedded.scm +++ b/gnu/packages/embedded.scm @@ -977,19 +977,19 @@ SPI, I2C, JTAG.") (define-public fc-host-tools (package (name "fc-host-tools") - (version "9a") + (version "10") (source (origin (method url-fetch) (uri (string-append "ftp://ftp.freecalypso.org/pub/GSM/" "FreeCalypso/fc-host-tools-r" version ".tar.bz2")) (sha256 (base32 - "15w1njlvbzzbr9bwj2hwy8na3a55p1z1cysk5h9iziz9y955ansg")))) + "0ybjqkz1cpnxni66p3valv1bva39vpwzdcc4040lqzx6py9h7h8b")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; No tests exist. #:make-flags - (list (string-append "INSTBIN=" %output "/bin") + (list (string-append "INSTALL_PREFIX=" %output) (string-append "INCLUDE_INSTALL_DIR=" %output "include/rvinterf")) #:phases (modify-phases %standard-phases From a734da8675becc4a6e07a3afa66d000c797e0247 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 Mar 2019 20:59:37 +0100 Subject: [PATCH 160/194] gnu: Add rkrlv2. * gnu/packages/music.scm (rkrlv2): New variable. --- gnu/packages/music.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm index d2ef0c0375..7d3020469f 100644 --- a/gnu/packages/music.scm +++ b/gnu/packages/music.scm @@ -3277,6 +3277,36 @@ slow gear audio effect to produce volume swells.")))) (description "This package provides the LV2 plugin \"GxSwitchlessWah\", a simulation of an analog Wah pedal with switchless activation.")))) +(define-public rkrlv2 + (let ((commit "d8c17d3c976107e5c012970276d7cf0aa059f15b") + (revision "1")) + (package + (name "rkrlv2") + (version (git-version "0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/ssj71/rkrlv2.git") + (commit commit))) + (sha256 + (base32 + "035z068rlafb7ibgqf34ck2lm4fab8yzlx41qh061x2xi4hxkvp0")) + (file-name (git-file-name name version)))) + (build-system cmake-build-system) + (arguments '(#:tests? #f)) ; there are no tests + (inputs + `(("fftw" ,fftw) + ("libsamplerate" ,libsamplerate) + ("lv2" ,lv2))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (home-page "https://github.com/ssj71/rkrlv2") + (synopsis "Rakarrack effects ported to LV2 plugins") + (description "This package provides the Rakarrack effects as LV2 +plugins. The ports are done such that hopefully when Rakarrack gets an active +maintainer these will get merged into the original project.") + (license license:gpl2)))) + (define-public mod-utilities (let ((commit "80ea3ea9f52fab7f191671f4810bf90fc955a046") (revision "2")) From 847768b9cc2e698ab96a430a599b2eaa936416af Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 Mar 2019 21:45:29 +0100 Subject: [PATCH 161/194] gnu: Add translate2geda. * gnu/packages/engineering.scm (translate2geda): New variable. --- gnu/packages/engineering.scm | 47 ++++++++++++++++++++++++++++++++++++ 1 file changed, 47 insertions(+) diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm index 9dab778de2..6b7dc3f595 100644 --- a/gnu/packages/engineering.scm +++ b/gnu/packages/engineering.scm @@ -37,6 +37,7 @@ #:use-module (guix utils) #:use-module ((srfi srfi-1) #:hide (zip)) #:use-module ((guix licenses) #:prefix license:) + #:use-module (guix build-system ant) #:use-module (guix build-system cmake) #:use-module (guix build-system gnu) #:use-module (guix build-system python) @@ -632,6 +633,52 @@ image, etc. Besides viewing Gerbers, you may also view Excellon drill files as well as pick-place files.") (license license:gpl2+))) +(define-public translate2geda + ;; There has been no formal release yet. + (let ((commit "4c19e7eefa338cea8f1ee999ea8b37f8d0698169") + (revision "1")) + (package + (name "translate2geda") + (version (git-version "0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/erichVK5/translate2geda.git") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1h062bbpw8nk0jamkya1k4lsgaia796jyviiz2gkdi6k1bxhwgpa")))) + (build-system ant-build-system) + (arguments + `(#:tests? #f ; there are no tests + #:jar-name "translate2geda.jar" + #:source-dir "." + #:main-class "translate2geda" + #:phases + (modify-phases %standard-phases + (add-after 'install 'install-bin + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin")) + (wrapper (string-append bin "/translate2geda"))) + (mkdir-p bin) + (with-output-to-file wrapper + (lambda _ + (format #t "#!/bin/sh~%exec ~a -jar ~a/share/java/translate2geda.jar" + (which "java") out))) + (chmod wrapper #o555)) + #t))))) + (home-page "https://github.com/erichVK5/translate2geda") + (synopsis "Utility for converting symbol and footprint formats to gEDA") + (description + "This package provides a utility for converting Kicad (@file{.mod}, +@file{.lib}), Eagle (@file{.lbr}), gerber (@file{.gbr}, etc..), +BXL (@file{.bxl}), IBIS (@file{.ibs}), symdef, LT-Spice (@file{.asc}), +QUCS (@file{.sch}), and BSDL (@file{.bsd}) symbols and footprints and EggBot +fonts to gEDA.") + (license license:gpl2+)))) + (define-public libfive (let ((commit "9d857d1923abecb0e5935b9287d22661f6efaac5") (revision "2")) From cafd4d387b213f1f50c9c2a9af0f45a1fe41516f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 Mar 2019 21:48:19 +0100 Subject: [PATCH 162/194] gnu: Add texlive-latex-xmpincl. * gnu/packages/tex.scm (texlive-latex-xmpincl): New variable. --- gnu/packages/tex.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/tex.scm b/gnu/packages/tex.scm index 3248076818..d2ded49efc 100644 --- a/gnu/packages/tex.scm +++ b/gnu/packages/tex.scm @@ -6460,3 +6460,25 @@ effects, varying slide transitions and animations.") ;; Code is dual licensed under GPLv2+ or LPPL1.3c+; documentation is ;; dual-licensed under either FDLv1.3+ or LPPL1.3c+. (license (list license:lppl1.3c+ license:gpl2+ license:fdl1.3+)))) + +(define-public texlive-latex-xmpincl + (package + (name "texlive-latex-xmpincl") + (version (number->string %texlive-revision)) + (source + (origin + (method svn-fetch) + (uri (texlive-ref "latex" "xmpincl")) + (sha256 + (base32 + "0lq3dfb4fsw955gjwllnk7cg00ciq5mva64mlpbva6g2jz117734")))) + (build-system texlive-build-system) + (arguments '(#:tex-directory "latex/xmpincl")) + (home-page "http://www.ctan.org/pkg/xmpincl") + (synopsis "Include eXtensible Metadata Platform data in pdfLaTeX") + (description + "The XMP (eXtensible Metadata platform) is a framework to add metadata to +digital material to enhance the workflow in publication. The essence is that +the metadata is stored in an XML file, and this XML stream is then embedded in +the file to which it applies.") + (license license:gpl3+))) From f87dcb4d75d9bef74ae7f97962435402ad2078a7 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 Mar 2019 21:49:25 +0100 Subject: [PATCH 163/194] gnu: Add texlive-latex-pdfx. * gnu/packages/tex.scm (texlive-latex-pdfx): New variable. --- gnu/packages/tex.scm | 52 ++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 52 insertions(+) diff --git a/gnu/packages/tex.scm b/gnu/packages/tex.scm index d2ded49efc..a0eeb23950 100644 --- a/gnu/packages/tex.scm +++ b/gnu/packages/tex.scm @@ -6482,3 +6482,55 @@ digital material to enhance the workflow in publication. The essence is that the metadata is stored in an XML file, and this XML stream is then embedded in the file to which it applies.") (license license:gpl3+))) + +(define-public texlive-latex-pdfx + (package + (name "texlive-latex-pdfx") + (version (number->string %texlive-revision)) + (source + (origin + (method svn-fetch) + (uri (texlive-ref "latex" "pdfx")) + (sha256 + (base32 + "0ikxg8yzq78hy5b9x13d4nah46d0yvmwlqmdri06pygbx116dcac")))) + (build-system texlive-build-system) + (arguments + '(#:tex-directory "latex/pdfx" + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-encoding + (lambda _ + (substitute* "pdfx.dtx" + ((" .+umaczy") "umaczy")) + #t)) + (add-before 'install 'install-tex-files + (lambda* (#:key inputs outputs #:allow-other-keys) + (let ((target (string-append (assoc-ref outputs "out") + "/share/texmf-dist/tex/latex/pdfx"))) + (mkdir-p target) + (copy-recursively (assoc-ref inputs "texlive-tex-pdfx") target) + ;; Install the generated version in the "install" phase. + (delete-file (string-append target "/pdfx.sty")) + #t)))))) + (propagated-inputs + `(("texlive-generic-pdftex" ,texlive-generic-pdftex))) + (native-inputs + `(("texlive-tex-pdfx" + ,(origin + (method svn-fetch) + (uri (svn-reference + (url (string-append "svn://www.tug.org/texlive/tags/" + %texlive-tag "/Master/texmf-dist/" + "/tex/latex/pdfx")) + (revision %texlive-revision))) + (file-name (string-append "texlive-tex-latex-pdfx-" version "-checkout")) + (sha256 + (base32 + "14j1zsvqc59ims3sk34v6km8db6cimks28y5fcxcr5mi2ykvj4vf")))))) + (home-page "https://www.ctan.org/pkg/pdfx") + (synopsis "PDF/X and PDF/A support for pdfTeX, LuaTeX and XeTeX") + (description + "This package helps LaTeX users to create PDF/X, PFD/A and other +standards-compliant PDF documents with pdfTeX, LuaTeX and XeTeX.") + (license license:lppl1.2+))) From 8b6acb1f20638de5b90c284baacc6058f7ffaa62 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 Mar 2019 22:59:21 +0100 Subject: [PATCH 164/194] gnu: blast+: Update to 2.7.1. * gnu/packages/bioinformatics.scm (blast+): Update to 2.7.1. [inputs]: Add lmdb. [source]: Remove obsolete patch. * gnu/package/patches/blast+-fix-makefile.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): Remove it. --- gnu/local.mk | 1 - gnu/packages/bioinformatics.scm | 6 +++--- gnu/packages/patches/blast+-fix-makefile.patch | 15 --------------- 3 files changed, 3 insertions(+), 19 deletions(-) delete mode 100644 gnu/packages/patches/blast+-fix-makefile.patch diff --git a/gnu/local.mk b/gnu/local.mk index 2971f3f87b..aeeedf45fc 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -670,7 +670,6 @@ dist_patch_DATA = \ %D%/packages/patches/beignet-correct-file-names.patch \ %D%/packages/patches/biber-fix-encoding-write.patch \ %D%/packages/patches/binutils-loongson-workaround.patch \ - %D%/packages/patches/blast+-fix-makefile.patch \ %D%/packages/patches/boost-fix-icu-build.patch \ %D%/packages/patches/byobu-writable-status.patch \ %D%/packages/patches/calibre-no-updates-dialog.patch \ diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ced948a5d1..26fcc3a41a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1092,7 +1092,7 @@ package provides command line tools using the Bio++ library.") (define-public blast+ (package (name "blast+") - (version "2.6.0") + (version "2.7.1") (source (origin (method url-fetch) (uri (string-append @@ -1100,8 +1100,7 @@ package provides command line tools using the Bio++ library.") version "/ncbi-blast-" version "+-src.tar.gz")) (sha256 (base32 - "15n937pw5aqmyfjb6l387d18grqbb96l63d5xj4l7yyh0zbf2405")) - (patches (search-patches "blast+-fix-makefile.patch")) + "1jlq0afxxgczpp35k6mxh8mn4jzq7vqcnaixk166sfj10wq8v9qh")) (modules '((guix build utils))) (snippet '(begin @@ -1209,6 +1208,7 @@ package provides command line tools using the Bio++ library.") "include")) ; 33 MB (inputs `(("bzip2" ,bzip2) + ("lmdb" ,lmdb) ("zlib" ,zlib) ("pcre" ,pcre) ("perl" ,perl) diff --git a/gnu/packages/patches/blast+-fix-makefile.patch b/gnu/packages/patches/blast+-fix-makefile.patch deleted file mode 100644 index bfa46a7e51..0000000000 --- a/gnu/packages/patches/blast+-fix-makefile.patch +++ /dev/null @@ -1,15 +0,0 @@ -Without this patch, the 'make install' attempts to 'install' a directory, which causes an error. - -diff --git a/c++/src/build-system/Makefile.in.top b/c++/src/build-system/Makefile.in.top -index 1abe44f..d6000b3 100644 ---- a/c++/src/build-system/Makefile.in.top -+++ b/c++/src/build-system/Makefile.in.top -@@ -51,7 +51,7 @@ install-toolkit: - done - cd $(includedir0) && find * -name CVS -prune -o -print |\ - cpio -pd $(pincludedir) -- $(INSTALL) -m 644 $(incdir)/* $(pincludedir) -+ cp -R $(incdir)/* $(pincludedir) - ## set up appropriate build and status directories somewhere under $(libdir)? - - install-gbench: From 8057c9e906fefb8df9ef94a83a644c9d7b1b0cd0 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 Mar 2019 23:18:01 +0100 Subject: [PATCH 165/194] gnu: Add epl2.0. * guix/licenses.scm (epl2.0): New variable. --- guix/licenses.scm | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/guix/licenses.scm b/guix/licenses.scm index 4ef3ed188c..d22c3fa36e 100644 --- a/guix/licenses.scm +++ b/guix/licenses.scm @@ -50,6 +50,7 @@ cpl1.0 edl1.0 epl1.0 + epl2.0 expat freetype freebsd-doc @@ -274,6 +275,11 @@ at URI, which may be a file:// URI pointing the package's tree." "http://directory.fsf.org/wiki/License:EPLv1.0" "https://www.gnu.org/licenses/license-list#EPL")) +(define epl2.0 + (license "EPL 2.0" + "https://www.eclipse.org/legal/epl-2.0/" + "https://www.gnu.org/licenses/license-list#EPL2")) + (define expat (license "Expat" "http://directory.fsf.org/wiki/License:Expat" From 74c2339fffcbbbc866c9c8f9a75a1aa8bb0a91dd Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 8 Mar 2019 23:18:56 +0100 Subject: [PATCH 166/194] gnu: Add java-eclipse-jdt-compiler-apt. * gnu/packages/java.scm (java-eclipse-jdt-compiler-apt): New variable. --- gnu/packages/java.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm index 89f2a8f5e2..47dc89d373 100644 --- a/gnu/packages/java.scm +++ b/gnu/packages/java.scm @@ -5984,6 +5984,33 @@ and contributes the Eclipse default text editor.") development tools.") (license license:epl1.0))) +(define-public java-eclipse-jdt-compiler-apt + (package + (name "java-eclipse-jdt-compiler-apt") + (version "1.3.400") + (source (origin + (method url-fetch) + (uri (string-append "https://repo1.maven.org/maven2/" + "org/eclipse/jdt/org.eclipse.jdt.compiler.apt/" + version "/org.eclipse.jdt.compiler.apt-" + version "-sources.jar")) + (sha256 + (base32 + "1s285k9p2ixdqrknb40jbbvw682n9a7l5lqpn583a8pvlzg2l6r8")))) + (build-system ant-build-system) + (arguments + `(#:tests? #f ; no tests included + #:jar-name "eclipse-jdt-compiler-apt.jar" + #:jdk ,openjdk11)) + (inputs + `(("java-eclipse-jdt-core" ,java-eclipse-jdt-core))) + (home-page "https://www.eclipse.org/jdt/apt/") + (synopsis "Annotation processing tool") + (description "APT stands for Annotation Processing Tool. APT provides a +means for generating files and compiling new Java classes based on annotations +found in your source code.") + (license license:epl2.0))) + (define-public java-javax-mail (package (name "java-javax-mail") From d429878daf3e3eb21660ed80934b1d4b0603f6e1 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ludovic=20Court=C3=A8s?= Date: Fri, 8 Mar 2019 22:48:04 +0100 Subject: [PATCH 167/194] activation: Shared system home directories are now 555 and root-owned. Fixes . Reported by Jack Hill . Regression introduced by the combination of 8bb76f3d44c1f5ffec8011819494db306a51d801 and 0ae735bcc8ff7fdc89d67b492bdee9091ee19e86: /var/empty would be 700 and owned by one of the system accounts (thus inaccessible to others), and /var/run/dbus would be 700 as well, thereby preventing D-Bus clients from connecting to the daemon. * gnu/build/activation.scm (duplicates): New procedure. (activate-users+groups)[system-accounts]: New variable. Use it. Make shared system account home directories #o555 and root-owned. * gnu/services/dbus.scm (dbus-activation): Make /var/run/dbus #o755. * gnu/tests/base.scm (run-basic-test): Test the ownership and permissions of /var/empty. --- gnu/build/activation.scm | 39 ++++++++++++++++++++++++++++++++++----- gnu/services/dbus.scm | 8 ++++++-- gnu/tests/base.scm | 6 ++++++ 3 files changed, 46 insertions(+), 7 deletions(-) diff --git a/gnu/build/activation.scm b/gnu/build/activation.scm index f24e6029fa..cfdf17df0f 100644 --- a/gnu/build/activation.scm +++ b/gnu/build/activation.scm @@ -24,6 +24,7 @@ #:use-module (guix build utils) #:use-module (ice-9 ftw) #:use-module (ice-9 match) + #:use-module (ice-9 vlist) #:use-module (srfi srfi-1) #:use-module (srfi srfi-11) #:use-module (srfi srfi-26) @@ -90,6 +91,21 @@ owner-writable in HOME." (make-file-writable target)))) files))) +(define (duplicates lst) + "Return elements from LST present more than once in LST." + (let loop ((lst lst) + (seen vlist-null) + (result '())) + (match lst + (() + (reverse result)) + ((head . tail) + (loop tail + (vhash-cons head #t seen) + (if (vhash-assoc head seen) + (cons head result) + result)))))) + (define (activate-users+groups users groups) "Make sure USERS (a list of user account records) and GROUPS (a list of user group records) are all available." @@ -97,9 +113,19 @@ group records) are all available." (let ((home (user-account-home-directory user)) (pwd (getpwnam (user-account-name user)))) (mkdir-p home) + + ;; Always set ownership and permissions for home directories of system + ;; accounts. If a service needs looser permissions on its home + ;; directories, it can always chmod it in an activation snippet. (chown home (passwd:uid pwd) (passwd:gid pwd)) (chmod home #o700))) + (define system-accounts + (filter (lambda (user) + (and (user-account-system? user) + (user-account-create-home-directory? user))) + users)) + ;; Allow home directories to be created under /var/lib. (mkdir-p "/var/lib") @@ -111,11 +137,14 @@ group records) are all available." ;; Home directories of non-system accounts are created by ;; 'activate-user-home'. - (for-each make-home-directory - (filter (lambda (user) - (and (user-account-system? user) - (user-account-create-home-directory? user))) - users)))) + (for-each make-home-directory system-accounts) + + ;; Turn shared home directories, such as /var/empty, into root-owned, + ;; read-only places. + (for-each (lambda (directory) + (chown directory 0 0) + (chmod directory #o555)) + (duplicates (map user-account-home-directory system-accounts))))) (define (activate-user-home users) "Create and populate the home directory of USERS, a list of tuples, unless diff --git a/gnu/services/dbus.scm b/gnu/services/dbus.scm index 1e24d93ccb..606ee0c2f5 100644 --- a/gnu/services/dbus.scm +++ b/gnu/services/dbus.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2013, 2014, 2015, 2016, 2017 Ludovic Courtès +;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2019 Ludovic Courtès ;;; Copyright © 2015 Sou Bunnbu ;;; ;;; This file is part of GNU Guix. @@ -150,7 +150,11 @@ includes the @code{etc/dbus-1/system.d} directories of each package listed in (let ((user (getpwnam "messagebus"))) (chown "/var/run/dbus" - (passwd:uid user) (passwd:gid user))) + (passwd:uid user) (passwd:gid user)) + + ;; This directory contains the daemon's socket so it must be + ;; world-readable. + (chmod "/var/run/dbus" #o755)) (unless (file-exists? "/etc/machine-id") (format #t "creating /etc/machine-id...~%") diff --git a/gnu/tests/base.scm b/gnu/tests/base.scm index cc8b273c98..f9390ee8e4 100644 --- a/gnu/tests/base.scm +++ b/gnu/tests/base.scm @@ -258,6 +258,12 @@ info --version") (operating-system-user-accounts os)))) (stat:perms (marionette-eval `(stat ,root-home) marionette)))) + (test-equal "ownership and permissions of /var/empty" + '(0 0 #o555) + (let ((st (marionette-eval `(stat "/var/empty") marionette))) + (list (stat:uid st) (stat:gid st) + (stat:perms st)))) + (test-equal "no extra home directories" '() From 0bd1498fc40820be35125cc0a62482d015b58e9b Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ludovic=20Court=C3=A8s?= Date: Fri, 8 Mar 2019 23:13:56 +0100 Subject: [PATCH 168/194] upstream: Correctly report failure to update Git checkouts. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Fixes . Reported by Gábor Boskovits . * guix/upstream.scm (package-update/url-fetch): New procedure, with code formerly in 'package-update'. (%method-updates): New variable. (package-update): Check the method to download PACKAGE's source, and look up a corresponding update method in %METHOD-UPDATES, and raise an error if none was found. --- guix/upstream.scm | 53 +++++++++++++++++++++++++++++++++++------------ 1 file changed, 40 insertions(+), 13 deletions(-) diff --git a/guix/upstream.scm b/guix/upstream.scm index 9163478099..55683dd9b7 100644 --- a/guix/upstream.scm +++ b/guix/upstream.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018 Ludovic Courtès +;;; Copyright © 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès ;;; Copyright © 2015 Alex Kost ;;; Copyright © 2019 Ricardo Wurmus ;;; @@ -23,7 +23,7 @@ #:use-module (guix utils) #:use-module (guix discovery) #:use-module ((guix download) - #:select (download-to-store)) + #:select (download-to-store url-fetch)) #:use-module (guix gnupg) #:use-module (guix packages) #:use-module (guix ui) @@ -37,6 +37,8 @@ #:use-module (srfi srfi-9) #:use-module (srfi srfi-11) #:use-module (srfi srfi-26) + #:use-module (srfi srfi-34) + #:use-module (srfi srfi-35) #:use-module (ice-9 match) #:use-module (ice-9 regex) #:export (upstream-source @@ -340,17 +342,13 @@ values: the item from LST1 and the item from LST2 that match PRED." (() (values #f #f))))) -(define* (package-update store package updaters - #:key (key-download 'interactive)) - "Return the new version, the file name of the new version tarball, and input -changes for PACKAGE; return #f (three values) when PACKAGE is up-to-date. -KEY-DOWNLOAD specifies a download policy for missing OpenPGP keys; allowed -values: 'always', 'never', and 'interactive' (default)." - (match (package-latest-release* package updaters) +(define* (package-update/url-fetch store package source + #:key key-download) + "Return the version, tarball, and input changes needed to update PACKAGE to +SOURCE, an ." + (match source (($ _ version urls signature-urls changes) - (let*-values (((name) - (package-name package)) - ((archive-type) + (let*-values (((archive-type) (match (and=> (package-source package) origin-uri) ((? string? uri) (let ((type (file-extension (basename uri)))) @@ -373,7 +371,36 @@ values: 'always', 'never', and 'interactive' (default)." (or signature-urls (circular-list #f))))) (let ((tarball (download-tarball store url signature-url #:key-download key-download))) - (values version tarball changes)))) + (values version tarball changes)))))) + +(define %method-updates + ;; Mapping of origin methods to source update procedures. + `((,url-fetch . ,package-update/url-fetch))) + +(define* (package-update store package updaters + #:key (key-download 'interactive)) + "Return the new version, the file name of the new version tarball, and input +changes for PACKAGE; return #f (three values) when PACKAGE is up-to-date. +KEY-DOWNLOAD specifies a download policy for missing OpenPGP keys; allowed +values: 'always', 'never', and 'interactive' (default)." + (match (package-latest-release* package updaters) + ((? upstream-source? source) + (let ((method (match (package-source package) + ((? origin? origin) + (origin-method origin)) + (_ + #f)))) + (match (assq method %method-updates) + (#f + (raise (condition (&message + (message (format #f (G_ "cannot download for \ +this method: ~s") + method))) + (&error-location + (location (package-location package)))))) + ((_ . update) + (update store package source + #:key-download key-download))))) (#f (values #f #f #f)))) From a48db08afe3e43c568c49a94d55bf3c93357bb03 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Fri, 8 Mar 2019 16:10:35 +0100 Subject: [PATCH 169/194] gnu: i3lock-fancy: Don't use unstable tarball. * gnu/packages/wm.scm (i3lock-fancy)[source]: Use GIT-FETCH and GIT-FILE-NAME. --- gnu/packages/wm.scm | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm index 554a14154c..06dada269c 100644 --- a/gnu/packages/wm.scm +++ b/gnu/packages/wm.scm @@ -434,16 +434,16 @@ Features include: (version "0.2") (source (origin - (method url-fetch) - (uri (string-append "https://github.com/meskarune/i3lock-fancy/archive/" - version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/meskarune/i3lock-fancy.git") + (commit version))) + (file-name (git-file-name name version)) (sha256 - (base32 - "020m7mnfq5cvir7p9v3hkb7cvb4cai33wppxl2zdwscwwjnchc5y")))) + (base32 "11g2kkim33ra38d1m897sq1ifajw17iyw9mr7sg1q8i2ibl4lfsi")))) (build-system gnu-build-system) (arguments - `(#:tests? #f ;No tests included + `(#:tests? #f ; no tests included #:phases (modify-phases %standard-phases (replace 'configure From f45cc966baffb061353cf9f9ead4667b2af82efc Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Fri, 8 Mar 2019 16:10:39 +0100 Subject: [PATCH 170/194] gnu: i3lock-color: Don't use unstable tarball. * gnu/packages/wm.scm (i3lock-color)[source]: Use GIT-FETCH and GIT-FILE-NAME. --- gnu/packages/wm.scm | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm index 06dada269c..68010136f2 100644 --- a/gnu/packages/wm.scm +++ b/gnu/packages/wm.scm @@ -392,16 +392,16 @@ prompt.") (version "2.11-c") (source (origin - (method url-fetch) - (uri (string-append "https://github.com/PandorasFox/i3lock-color/" - "archive/" version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/PandorasFox/i3lock-color.git") + (commit version))) + (file-name (git-file-name name version)) (sha256 - (base32 - "0zh7il2y6dmzym3w6r9xii5dma8pjjjlq4dm5iby7m3gvplj4q9p")))) + (base32 "1myq9fazkwd776agrnj27bm5nwskvss9v9a5qb77n037dv8d0rdw")))) (build-system gnu-build-system) (arguments - `(#:tests? #f)) ;no tests included + `(#:tests? #f)) ; no tests included (inputs `(("cairo" ,cairo) ("libev" ,libev) From 7969751f5474592f7bb22cba3b3cff3d5a43c588 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Fri, 8 Mar 2019 16:31:23 +0100 Subject: [PATCH 171/194] gnu: i3lock-color: Update to 2.12.c. * gnu/packages/wm.scm (i3lock-color): Update to 2.12.c. [inputs]: Add xcb-util-xrm. --- gnu/packages/wm.scm | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm index 68010136f2..96ef06bc15 100644 --- a/gnu/packages/wm.scm +++ b/gnu/packages/wm.scm @@ -389,7 +389,7 @@ prompt.") (define-public i3lock-color (package (name "i3lock-color") - (version "2.11-c") + (version "2.12.c") (source (origin (method git-fetch) @@ -398,7 +398,7 @@ prompt.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "1myq9fazkwd776agrnj27bm5nwskvss9v9a5qb77n037dv8d0rdw")))) + (base32 "08fhnchf187b73h52xgzb86g6byzxz085zs9galsvl687g5zxk34")))) (build-system gnu-build-system) (arguments `(#:tests? #f)) ; no tests included @@ -410,7 +410,8 @@ prompt.") ("libxkbcommon" ,libxkbcommon) ("linux-pam" ,linux-pam) ("xcb-util" ,xcb-util) - ("xcb-util-image" ,xcb-util-image))) + ("xcb-util-image" ,xcb-util-image) + ("xcb-util-xrm" ,xcb-util-xrm))) (native-inputs `(("autoconf" ,autoconf) ("automake" ,automake) From f762e49f28dbd2bcb0ec0717a36c16da27f9da0b Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Fri, 8 Mar 2019 01:11:45 +0100 Subject: [PATCH 172/194] gnu: dovecot: Indent arguments. * gnu/packages/mail.scm (dovecot)[arguments]: C-M-q and tuck left. --- gnu/packages/mail.scm | 49 ++++++++++++++++++++----------------------- 1 file changed, 23 insertions(+), 26 deletions(-) diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm index 69fee43bb9..fb990371af 100644 --- a/gnu/packages/mail.scm +++ b/gnu/packages/mail.scm @@ -1303,32 +1303,29 @@ facilities for checking incoming mail.") (arguments `(#:configure-flags '("--sysconfdir=/etc" "--localstatedir=/var") - #:phases (modify-phases %standard-phases - (add-before - 'configure 'pre-configure - (lambda _ - ;; Simple hack to avoid installing in /etc. - (substitute* '("doc/Makefile.in" - "doc/example-config/Makefile.in") - (("pkgsysconfdir = .*") - "pkgsysconfdir = /tmp/etc")) - #t)) - (add-after - 'unpack 'patch-file-names - (lambda _ - (substitute* - "src/lib-program-client/test-program-client-local.c" - (("(/bin/| )cat") (which "cat")) - (("/bin/echo") (which "echo")) - (("/bin/false") (which "false")) - (("/bin/sh") (which "bash")) - (("head") (which "head")) - (("sleep") (which "sleep"))) - (substitute* - (list "src/lib-smtp/test-bin/sendmail-exit-1.sh" - "src/lib-smtp/test-bin/sendmail-success.sh") - (("cat") (which "cat"))) - #t))))) + #:phases + (modify-phases %standard-phases + (add-before 'configure 'pre-configure + (lambda _ + ;; Simple hack to avoid installing in /etc. + (substitute* '("doc/Makefile.in" + "doc/example-config/Makefile.in") + (("pkgsysconfdir = .*") + "pkgsysconfdir = /tmp/etc")) + #t)) + (add-after 'unpack 'patch-file-names + (lambda _ + (substitute* "src/lib-program-client/test-program-client-local.c" + (("(/bin/| )cat") (which "cat")) + (("/bin/echo") (which "echo")) + (("/bin/false") (which "false")) + (("/bin/sh") (which "bash")) + (("head") (which "head")) + (("sleep") (which "sleep"))) + (substitute* (list "src/lib-smtp/test-bin/sendmail-exit-1.sh" + "src/lib-smtp/test-bin/sendmail-success.sh") + (("cat") (which "cat"))) + #t))))) (home-page "https://www.dovecot.org") (synopsis "Secure POP3/IMAP server") (description From 37fc44eab9a557550a7b1304ac95388949c20eaa Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Fri, 8 Mar 2019 01:15:21 +0100 Subject: [PATCH 173/194] gnu: dovecot: Avoid unnecessary patching. MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * gnu/packages/mail.scm (dovecot)[arguments]: Replace ‘pre-configure’ patching with custom ‘make install sysconfdir=…’. --- gnu/packages/mail.scm | 15 ++++++--------- 1 file changed, 6 insertions(+), 9 deletions(-) diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm index fb990371af..e51d691006 100644 --- a/gnu/packages/mail.scm +++ b/gnu/packages/mail.scm @@ -1305,14 +1305,6 @@ facilities for checking incoming mail.") "--localstatedir=/var") #:phases (modify-phases %standard-phases - (add-before 'configure 'pre-configure - (lambda _ - ;; Simple hack to avoid installing in /etc. - (substitute* '("doc/Makefile.in" - "doc/example-config/Makefile.in") - (("pkgsysconfdir = .*") - "pkgsysconfdir = /tmp/etc")) - #t)) (add-after 'unpack 'patch-file-names (lambda _ (substitute* "src/lib-program-client/test-program-client-local.c" @@ -1325,7 +1317,12 @@ facilities for checking incoming mail.") (substitute* (list "src/lib-smtp/test-bin/sendmail-exit-1.sh" "src/lib-smtp/test-bin/sendmail-success.sh") (("cat") (which "cat"))) - #t))))) + #t)) + (replace 'install + (lambda* (#:key make-flags #:allow-other-keys) + ;; Simple hack to avoid installing a trivial README in /etc. + (apply invoke "make" "install" "sysconfdir=/tmp/bogus" + make-flags)))))) (home-page "https://www.dovecot.org") (synopsis "Secure POP3/IMAP server") (description From 7b957a3344c3f47db609fa88b09c23da11bd305c Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Fri, 8 Mar 2019 16:43:17 +0100 Subject: [PATCH 174/194] gnu: youtube-viewer: Update to "3.5.4. * gnu/packages/video.scm (youtube-viewer): Update to "3.5.4. --- gnu/packages/video.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm index de466b9dfe..f67b235596 100644 --- a/gnu/packages/video.scm +++ b/gnu/packages/video.scm @@ -1570,7 +1570,7 @@ audio, images) from the Web. It can use either mpv or vlc for playback.") (define-public youtube-viewer (package (name "youtube-viewer") - (version "3.5.2") + (version "3.5.4") (source (origin (method git-fetch) (uri (git-reference @@ -1579,7 +1579,7 @@ audio, images) from the Web. It can use either mpv or vlc for playback.") (file-name (git-file-name name version)) (sha256 (base32 - "0sx0f7jgc41a4anflw02zqk5yivydn02nn78kxkn3fik6xdmv3yd")))) + "1j782m9rximybamd0qsc43hi7hgk333x9gy3ypzb61s0sifs0i6m")))) (build-system perl-build-system) (native-inputs `(("perl-module-build" ,perl-module-build))) From 373abfb3985ea85bc574d707764ac739987c022c Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Fri, 8 Mar 2019 16:52:10 +0100 Subject: [PATCH 175/194] gnu: lynis: Update to 2.7.2. * gnu/packages/admin.scm (lynis): Update to 2.7.2. --- gnu/packages/admin.scm | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm index cc687a14fa..e26bf030cc 100644 --- a/gnu/packages/admin.scm +++ b/gnu/packages/admin.scm @@ -2919,7 +2919,7 @@ Logitech Unifying Receiver.") (define-public lynis (package (name "lynis") - (version "2.7.1") + (version "2.7.2") (source (origin (method git-fetch) @@ -2928,8 +2928,7 @@ Logitech Unifying Receiver.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 - "1nv2dqd2k2n8mcdr6xl5g713xxkgvja6487by1wn4k0b416jij9i")) + (base32 "0dbbfk47dpxx7zpb98n4w3ls3z5di57qnr2nsgxjvp49gk9j3f6k")) (modules '((guix build utils))) (snippet '(begin From 983550692dbf5a41afef1b1cae53fece42b3d4bf Mon Sep 17 00:00:00 2001 From: Pierre Neidhardt Date: Thu, 21 Feb 2019 19:07:09 +0100 Subject: [PATCH 176/194] gnu: Add hyperledger-fabric. * gnu/local.mk (hyperledger): New variable. --- gnu/local.mk | 1 + gnu/packages/hyperledger.scm | 89 ++++++++++++++++++++++++++++++++++++ 2 files changed, 90 insertions(+) create mode 100644 gnu/packages/hyperledger.scm diff --git a/gnu/local.mk b/gnu/local.mk index aeeedf45fc..63857d98a8 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -236,6 +236,7 @@ GNU_SYSTEM_MODULES = \ %D%/packages/hexedit.scm \ %D%/packages/hugs.scm \ %D%/packages/hurd.scm \ + %D%/packages/hyperledger.scm \ %D%/packages/ibus.scm \ %D%/packages/icu4c.scm \ %D%/packages/idris.scm \ diff --git a/gnu/packages/hyperledger.scm b/gnu/packages/hyperledger.scm new file mode 100644 index 0000000000..5f8b782818 --- /dev/null +++ b/gnu/packages/hyperledger.scm @@ -0,0 +1,89 @@ +;;; GNU Guix --- Functional package management for GNU +;;; Copyright © 2019 Pierre Neidhardt +;;; +;;; This file is part of GNU Guix. +;;; +;;; GNU Guix is free software; you can redistribute it and/or modify it +;;; under the terms of the GNU General Public License as published by +;;; the Free Software Foundation; either version 3 of the License, or (at +;;; your option) any later version. +;;; +;;; GNU Guix is distributed in the hope that it will be useful, but +;;; WITHOUT ANY WARRANTY; without even the implied warranty of +;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;;; GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with GNU Guix. If not, see . + +(define-module (gnu packages hyperledger) + #:use-module (ice-9 match) + #:use-module (guix build-system go) + #:use-module (guix build-system trivial) + #:use-module (guix packages) + #:use-module (guix download) + #:use-module (guix git-download) + #:use-module (guix licenses) + #:use-module (gnu packages) + #:use-module (gnu packages base) + #:use-module (gnu packages curl) + #:use-module (gnu packages docker) + #:use-module (gnu packages golang) + #:use-module (gnu packages version-control)) + +(define-public hyperledger-fabric + (package + (name "hyperledger-fabric") + (version "1.4") + ;; While the GitHub repository is supposed to be "just a mirror," the Go + ;; imports refer to it explicitly. + (home-page "https://github.com/hyperledger/fabric") + (source (origin + (method git-fetch) + (uri (git-reference + (url home-page) + (commit (string-append "release-" version)))) + (sha256 + (base32 + "1g003wf6439f2c9i2vphf4sh463yyasq1vpqmkpw9lj170a6kl8k")) + (file-name (git-file-name name version)))) + (build-system go-build-system) + (native-inputs + `(("which" ,which) + ("docker-cli" ,docker-cli) + ("git" ,git) + ("curl" ,curl))) + (arguments + `(#:import-path "github.com/hyperledger/fabric" + #:unpack-path "github.com/hyperledger/fabric" + ;; We don't need to install the source code for end-user applications. + #:install-source? #f + ;; TODO: Tests require a running Docker daemon. + #:tests? #f + #:phases + (modify-phases %standard-phases + (replace 'build + (lambda _ + ;; Only linux-amd64 and linux-ppc64le seem to be supported at the moment. + (invoke "make" "-C" "src/github.com/hyperledger/fabric" + "release/linux-amd64"))) + (add-after 'install 'install-commands + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out")) + (src "src/github.com/hyperledger/fabric/")) + (with-directory-excursion src + (copy-recursively + "release/linux-amd64/bin" + (string-append out "/bin")) + (install-file "LICENSE" + (string-append out "/share/licenses")) + (install-file "README.md" + (string-append out "/share/doc")) + (copy-recursively "sampleconfig" + (string-append out "/etc/hyperledger/fabric")))) + #t))))) + (synopsis "Platform for distributed ledger solutions") + (description "A platform for distributed ledger solutions, underpinned by +a modular architecture delivering high degrees of confidentiality, resiliency, +flexibility and scalability.") + (license asl2.0))) From 7d4cab7473cc9a9c4c831a6c83fa172bd7ab6f10 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 9 Mar 2019 10:43:18 +0100 Subject: [PATCH 177/194] gnu: Add openfst. * gnu/packages/machine-learning.scm (openfst): New variable. --- gnu/packages/machine-learning.scm | 20 +++++++++++++++++++- 1 file changed, 19 insertions(+), 1 deletion(-) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 039e5a0a49..1db5f4a256 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus +;;; Copyright © 2015, 2016, 2017, 2018, 2019 Ricardo Wurmus ;;; Copyright © 2016 Efraim Flashner ;;; Copyright © 2016, 2017 Marius Bakke ;;; Copyright © 2016 Hartmut Goebel @@ -371,6 +371,24 @@ value imputation, classifier creation, generalization error estimation and sample proximities between pairs of cases.") (license license:gpl3+))) +(define-public openfst + (package + (name "openfst") + (version "1.7.1") + (source (origin + (method url-fetch) + (uri (string-append "http://www.openfst.org/twiki/pub/FST/" + "FstDownload/openfst-" version ".tar.gz")) + (sha256 + (base32 + "0x9wfcqd8hq4h349s7j77sr60h8xjdfshqw1m3a2n6z5bdr9qkm1")))) + (build-system gnu-build-system) + (home-page "http://www.openfst.org") + (synopsis "Library for weighted finite-state transducers") + (description "OpenFst is a library for constructing, combining, +optimizing, and searching weighted finite-state transducers (FSTs).") + (license license:asl2.0))) + (define-public shogun (package (name "shogun") From 2b613a1a5d4d41b0b5d1f6ea7254585be0c209fa Mon Sep 17 00:00:00 2001 From: Pierre Neidhardt Date: Sat, 9 Mar 2019 12:30:24 +0100 Subject: [PATCH 178/194] gnu: hyperledger-fabric: Fix description, set supported system and parallel build. * gnu/packages/hyperledger.scm (hyperledger-fabric)[description]: Rephrase into something less marketing-ish. [arguments]: Build with multiple jobs. [supported-systems]: Support x86_64-linux only. --- gnu/packages/hyperledger.scm | 12 ++++++++---- 1 file changed, 8 insertions(+), 4 deletions(-) diff --git a/gnu/packages/hyperledger.scm b/gnu/packages/hyperledger.scm index 5f8b782818..b25a3c48e7 100644 --- a/gnu/packages/hyperledger.scm +++ b/gnu/packages/hyperledger.scm @@ -65,7 +65,9 @@ (replace 'build (lambda _ ;; Only linux-amd64 and linux-ppc64le seem to be supported at the moment. - (invoke "make" "-C" "src/github.com/hyperledger/fabric" + (invoke "make" + "-j" (number->string (parallel-job-count)) + "-C" "src/github.com/hyperledger/fabric" "release/linux-amd64"))) (add-after 'install 'install-commands (lambda* (#:key outputs #:allow-other-keys) @@ -82,8 +84,10 @@ (copy-recursively "sampleconfig" (string-append out "/etc/hyperledger/fabric")))) #t))))) + (supported-systems '("x86_64-linux")) (synopsis "Platform for distributed ledger solutions") - (description "A platform for distributed ledger solutions, underpinned by -a modular architecture delivering high degrees of confidentiality, resiliency, -flexibility and scalability.") + (description "Hyperledger Fabric is a platform for distributed ledger +solutions, underpinned by a modular architecture focusing on confidentiality +and resiliency. It is designed to support pluggable implementations of +different components.") (license asl2.0))) From 380384e419963e3f620786f8899bfb7b7632a68d Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Sun, 10 Mar 2019 13:36:36 +0100 Subject: [PATCH 179/194] gnu: ibus: Update Unicode data to 12.0.0. * gnu/packages/ibus.scm (ibus)[native-inputs]: Use versioned URLs for Unicode data and update hashes. --- gnu/packages/ibus.scm | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/gnu/packages/ibus.scm b/gnu/packages/ibus.scm index 7dc3bd89a1..77aecce9f2 100644 --- a/gnu/packages/ibus.scm +++ b/gnu/packages/ibus.scm @@ -144,18 +144,20 @@ (native-inputs `(("glib" ,glib "bin") ; for glib-genmarshal ("gobject-introspection" ,gobject-introspection) ; for g-ir-compiler + + ;; XXX TODO: Move Unicode data to its own (versioned) package. ("unicode-nameslist" ,(origin (method url-fetch) - (uri "https://www.unicode.org/Public/UNIDATA/NamesList.txt") + (uri "https://www.unicode.org/Public/12.0.0/ucd/NamesList.txt") (sha256 - (base32 "0yr2h0nfqhirfi3bxl33z6cc94qqshlpgi06c25xh9754irqsgv8")))) + (base32 "0vsq8gx7hws8mvxy3nlglpwxw7ky57q0fs09d7w9xgb2ylk7fz61")))) ("unicode-blocks" ,(origin (method url-fetch) - (uri "https://www.unicode.org/Public/UNIDATA/Blocks.txt") + (uri "https://www.unicode.org/Public/12.0.0/ucd/Blocks.txt") (sha256 - (base32 "0lnh9iazikpr548bd7nkaq9r3vfljfvz0rg2462prac8qxk7ni8b")))) + (base32 "041sk54v6rjzb23b9x7yjdwzdp2wc7gvfz7ybavgg4gbh51wm8x1")))) ("vala" ,vala) ("pkg-config" ,pkg-config))) (native-search-paths From 4eb57ca883e804897f7099ecf6e5a77161e46d9e Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Fri, 1 Mar 2019 18:44:08 +0100 Subject: [PATCH 180/194] gnu: Add opensmtpd-next. * gnu/packages/mail.scm (opensmtpd-next): New public variable. --- gnu/packages/mail.scm | 75 +++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 75 insertions(+) diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm index e51d691006..fb8ca2d358 100644 --- a/gnu/packages/mail.scm +++ b/gnu/packages/mail.scm @@ -2124,6 +2124,81 @@ e-mails with other systems speaking the SMTP protocol.") (license (list bsd-2 bsd-3 bsd-4 (non-copyleft "file://COPYING") public-domain isc license:openssl)))) +;; OpenSMTPd 6.4 introduced a new and incompatible configuration file format. +;; Use a different name, for now, to avoid auto-upgrades and broken mail boxes. +;; OPENSMTP-CONFIGURATION in (gnu services mail) will also need an overhaul. +(define-public opensmtpd-next + (package + (name "opensmtpd-next") + (version "6.4.1p2") + (source + (origin + (method url-fetch) + (uri (string-append "https://www.opensmtpd.org/archives/" + "opensmtpd-" version ".tar.gz")) + (sha256 + (base32 "0cppqlx4fk6l8rbim5symh2fm1kzshf421256g596j6c9f9q96xn")))) + (build-system gnu-build-system) + (inputs + `(("bdb" ,bdb) + ("libasr" ,libasr) + ("libevent" ,libevent) + ("libressl" ,libressl) + ("linux-pam" ,linux-pam) + ("zlib" ,zlib))) + (native-inputs + `(("bison" ,bison) + ("groff" ,groff))) ; for man pages + (arguments + `(#:configure-flags + (list "--localstatedir=/var" + ;; This is the default only if it exists at build time—it doesn't. + "--with-path-socket=/var/run" + "--with-path-CAfile=/etc/ssl/certs/ca-certificates.crt" + "--with-user-smtpd=smtpd" + "--with-user-queue=smtpq" "--with-group-queue=smtpq" + "--with-auth-pam" + "--with-table-db") + #:phases + (modify-phases %standard-phases + ;; Fix some incorrectly hard-coded external tool file names. + (add-after 'unpack 'patch-FHS-file-names + (lambda _ + (substitute* "smtpd/smtpctl.c" + ;; ‘gzcat’ is auto-detected at compile time, but ‘cat’ isn't. + (("/bin/cat") (which "cat"))) + (substitute* "smtpd/mda_unpriv.c" + (("/bin/sh") (which "sh"))) + #t)) + ;; OpenSMTPD provides a single smtpctl utility to control both the + ;; daemon and the local submission subsystem. To accomodate systems + ;; that require historical interfaces such as sendmail, newaliases or + ;; makemap, smtpctl operates in compatibility mode if called with the + ;; historical name. + (add-after 'install 'install-compability-links + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (sbin (string-append out "/sbin/"))) + (for-each (lambda (command) + (symlink "smtpctl" (string-append sbin command))) + (list "mailq" "makemap" "newaliases" + "send-mail" "sendmail"))) + #t))))) + (synopsis "Lightweight SMTP daemon") + (description + "OpenSMTPD is an implementation of server-side @acronym{SMTP, Simple Mail +Transfer Protocol}, with some additional standard extensions. It allows +ordinary machines to exchange e-mails with other systems speaking the SMTP +protocol, or to deliver them to local users. + +In order to simplify the use of SMTP, OpenSMTPD implements a smaller set of +functionality than those available in other SMTP daemons. The objective is to +provide enough features to satisfy typical usage at the risk of unsuitability +to esoteric or niche requirements.") + (home-page "https://www.opensmtpd.org") + (license (list bsd-2 bsd-3 bsd-4 (non-copyleft "file://COPYING") + public-domain isc license:openssl)))) + (define-public opensmtpd-extras (package (name "opensmtpd-extras") From 05487ed8e629b057a113c18560c5976a81c88237 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 10 Mar 2019 09:38:03 +0100 Subject: [PATCH 181/194] gnu: scons: Update to 3.0.4. * gnu/packages/python-xyz.scm (scons): Update to 3.0.4. [arguments]: Remove second instance of "imp.load_module" (bug 34236). --- gnu/packages/python-xyz.scm | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 2ec12be007..db4a2e0193 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -1355,7 +1355,7 @@ existing ones.") (define-public scons (package (name "scons") - (version "3.0.3") + (version "3.0.4") (source (origin (method git-fetch) (uri (git-reference @@ -1364,7 +1364,7 @@ existing ones.") (file-name (git-file-name name version)) (sha256 (base32 - "1xizkjgrvydkjhpv7i5rx0mdkp3618sis7jsckjh57nxcynlk5dc")))) + "1xy8jrwz87y589ihcld4hv7wn122sjbz914xn8h50ww77wbhk8hn")))) (build-system python-build-system) (arguments `(#:use-setuptools? #f ; still relies on distutils @@ -1376,6 +1376,9 @@ existing ones.") (substitute* "src/engine/SCons/compat/__init__.py" (("sys.modules\\[new\\] = imp.load_module\\(old, \\*imp.find_module\\(old\\)\\)") "sys.modules[new] = __import__(old)")) + (substitute* "src/engine/SCons/Platform/__init__.py" + (("mod = imp.load_module\\(full_name, file, path, desc\\)") + "mod = __import__(full_name)")) (invoke "python" "bootstrap.py" "build/scons" "DEVELOPER=guix") (chdir "build/scons") #t))))) From c06709b8a496c2af91562ee8bfba538b51ec6c35 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 10 Mar 2019 10:20:01 +0100 Subject: [PATCH 182/194] gnu: Add slingshot. * gnu/packages/games.scm (slingshot): New variable. --- gnu/packages/games.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 0d50f55a75..0dcf7eb879 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -6118,3 +6118,30 @@ to download and install them in @file{$HOME/.stepmania-X.Y/Songs} directory.") (home-page "https://www.stepmania.com") (license license:expat))) + +(define-public slingshot + (package + (name "slingshot") + (version "0.9") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/ryanakca/slingshot.git") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "19m8b6nsi786bc6gmkp185mwri3r5y249gjmqd5qsc23nnfhgrs1")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2)) + (inputs + `(("python-pygame" ,python2-pygame))) + (home-page "https://github.com/ryanakca/slingshot") + (synopsis "Simple 2D shooting strategy game set in space") + (description "Slingshot is a two-dimensional strategy game where two +players attempt to shoot one another through a section of space populated by +planets. The main feature of the game is that the shots, once fired, are +affected by the gravity of the planets.") + (license license:gpl2+))) From 8ada024ba69c6e8f72c69461c2322cddad88921b Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 10 Mar 2019 10:55:55 +0100 Subject: [PATCH 183/194] gnu: Add 4dtris. * gnu/packages/games.scm (4dtris): New variable. --- gnu/packages/games.scm | 47 ++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 47 insertions(+) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 0dcf7eb879..410851ac8f 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -6145,3 +6145,50 @@ players attempt to shoot one another through a section of space populated by planets. The main feature of the game is that the shots, once fired, are affected by the gravity of the planets.") (license license:gpl2+))) + +(define-public 4dtris + (package + (name "4dtris") + (version "0.4.3") + (source + (origin + (method url-fetch) + (uri (string-append "https://launchpad.net/4dtris/" + (version-major+minor version) + "/" version "/+download/4dtris_" + version ".orig.tar.gz")) + (sha256 + (base32 + "1nfkhcm0l89jyw8yr65na97g4l385zhjf7whkyg47c3v5sdqq2g7")))) + (build-system gnu-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-install-directories + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (substitute* "Makefile.in" + (("bindir = /usr/games") + (string-append "bindir = " out "/bin")) + (("/usr/share/applications") + (string-append out "/share/applications")) + (("/usr/share/games/4dtris") + (string-append out "/share/4dtris")))) + #t)) + (add-after 'set-paths 'set-sdl-paths + (lambda* (#:key inputs #:allow-other-keys) + (setenv "CPATH" + (string-append (assoc-ref inputs "sdl") + "/include/SDL")) + #t))))) + (inputs + `(("fontconfig" ,fontconfig) + ("freeglut" ,freeglut) + ("sdl" ,(sdl-union (list sdl sdl-ttf))))) + (home-page "https://launchpad.net/4dtris/") + (synopsis "4D Tetris") + (description "4D-TRIS is an alteration of the well-known Tetris game. The +game field is extended to 4D space, which has to filled up by the gamer with +4D hyper cubes.") + (license license:gpl3))) + From d7764d42e4dac020c1428b5b44a3af7a7f0580f3 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 10 Mar 2019 14:02:20 +0100 Subject: [PATCH 184/194] gnu: Add libsmpeg-with-sdl1. * gnu/packages/video.scm (libsmpeg-with-sdl1): New variable. (libsmpeg)[version]: Change to 0.4.5-401. --- gnu/packages/video.scm | 21 +++++++++++++++++++-- 1 file changed, 19 insertions(+), 2 deletions(-) diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm index f67b235596..d5dc3d29e1 100644 --- a/gnu/packages/video.scm +++ b/gnu/packages/video.scm @@ -5,7 +5,7 @@ ;;; Copyright © 2015 Taylan Ulrich Bayırlı/Kammer ;;; Copyright © 2015, 2016, 2017, 2018, 2019 Efraim Flashner ;;; Copyright © 2015 Andy Patterson -;;; Copyright © 2015, 2018 Ricardo Wurmus +;;; Copyright © 2015, 2018, 2019 Ricardo Wurmus ;;; Copyright © 2015, 2016, 2017, 2018, 2019 Alex Vong ;;; Copyright © 2016, 2017 Alex Griffin ;;; Copyright © 2016 Kei Kebreau @@ -2398,7 +2398,7 @@ Other features include a live preview and live streaming.") (define-public libsmpeg (package (name "libsmpeg") - (version "0.4.5") + (version "0.4.5-401") (source (origin (method svn-fetch) (uri (svn-reference @@ -2433,6 +2433,23 @@ and MPEG system streams.") license:lgpl2.1+ license:gpl2)))) +;; for btanks +(define-public libsmpeg-with-sdl1 + (package (inherit libsmpeg) + (name "libsmpeg") + (version "0.4.5-399") + (source (origin + (method svn-fetch) + (uri (svn-reference + (url "svn://svn.icculus.org/smpeg/trunk/") + (revision 399))) ; tagged release 0.4.5 + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 + "0jfi085rf3fa5xsn0vd3nqf32my8ph9c6a9445y7a8lrlz4dms64")))) + (inputs + `(("sdl" ,sdl))))) + (define-public libbdplus (package (name "libbdplus") From ca32afacf9cfbd415f9f14413d6f00ea306060e9 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sun, 10 Mar 2019 14:01:49 +0100 Subject: [PATCH 185/194] gnu: Add btanks. * gnu/packages/games.scm (btanks): New variable. --- gnu/packages/games.scm | 86 +++++++++++++++++++++++++++++++++++++++++- 1 file changed, 85 insertions(+), 1 deletion(-) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 410851ac8f..295007319d 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -11,7 +11,7 @@ ;;; Copyright © 2015, 2016 Andreas Enge ;;; Copyright © 2015 David Hashe ;;; Copyright © 2015, 2017, 2018 Christopher Lemmer Webber -;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus +;;; Copyright © 2015, 2016, 2017, 2018, 2019 Ricardo Wurmus ;;; Copyright © 2015, 2016, 2017 Alex Kost ;;; Copyright © 2015 Paul van der Walt ;;; Copyright © 2016, 2017 Rodger Fox @@ -6118,6 +6118,90 @@ to download and install them in @file{$HOME/.stepmania-X.Y/Songs} directory.") (home-page "https://www.stepmania.com") (license license:expat))) +(define-public btanks + (package + (name "btanks") + (version "0.9.8083") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/btanks/btanks-source/" + "btanks-" version ".tar.bz2")) + (sha256 + (base32 + "0ha35kxc8xlbg74wsrbapfgxvcrwy6psjkqi7c6adxs55dmcxliz")))) + (build-system scons-build-system) + (arguments + `(#:tests? #f ; there are none + #:scons ,scons-python2 + #:scons-flags (list (string-append "prefix=" (assoc-ref %outputs "out"))) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'replace-removed-scons-syntax + (lambda _ + (substitute* "SConstruct" + (("Options") "Variables") + (("opts.Add\\(BoolOption.*") "opts.Add('gcc_visibility', 'gcc visibility', 'true')") + (("opts.Add\\(EnumOption.*") "opts.Add('mode', 'build mode', 'release')")) + #t)) + (add-after 'set-paths 'set-sdl-paths + (lambda* (#:key inputs #:allow-other-keys) + (setenv "CPATH" + (string-append (assoc-ref inputs "sdl") + "/include/SDL")) + #t)) + (add-after 'unpack 'fix-compilation-errors + (lambda _ + (substitute* "mrt/base_file.h" + (("#include " m) + (string-append m "\n#include "))) + (substitute* '("engine/sl08/sl08.h" + "engine/sl08/sl08.py") + (("signal = NULL") "signal = 0") + (("object\\(NULL\\)") "object(0)") + (("func\\(NULL\\)") "func(0)") + ((" connect\\(signal_ref\\)") + " this->connect(signal_ref)")) + (substitute* "math/range_list.h" + ((" lower_bound\\(value\\)") + " this->lower_bound(value)") + ((" erase\\(i\\)") + " this->erase(i)")) + (substitute* "clunk/source.cpp" + (("using namespace clunk" m) + (string-append "# define pow10f(x) exp10f(x)\n" m))) + #t)) + (add-after 'unpack 'find-lua + (lambda _ + (substitute* "engine/SConscript" + (("lua5.1") "lua-5.1") + (("bt_libs.append\\(lua\\)") + "bt_libs.append(\"lua\")")) + #t))))) + (inputs + `(("expat" ,expat) + ("glu" ,glu) + ("libsmpeg" ,libsmpeg-with-sdl1) + ("libvorbis" ,libvorbis) + ("lua51" ,lua-5.1) + ("sdl" ,(sdl-union (list sdl + sdl-mixer + sdl-image + sdl-ttf))) + ("zlib" ,zlib))) + (native-inputs + `(("pkg-config" ,pkg-config) + ("zip" ,zip))) + (home-page "http://btanks.sourceforge.net") + (synopsis "Multiplayer tank battle game") + (description "Battle Tanks is a funny battle game, where you can choose +one of three vehicles and eliminate your enemy using the whole arsenal of +weapons. It has original cartoon-like graphics and cool music, it’s fun and +dynamic, it has several network modes for deathmatch and cooperative.") + ;; Some parts (e.g. mrt/b64.cpp) are LGPLv2.1+, but the whole package is + ;; released under GPLv2 or later. It comes with extra exceptions for the + ;; developers. + (license (list license:gpl2+ license:lgpl2.1+)))) (define-public slingshot (package From 10bd2889d267df479f79f43471d3c2dd17da345a Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Sat, 9 Mar 2019 15:54:14 +0100 Subject: [PATCH 186/194] gnu: sane-backends: Support PNG scanimage output. * gnu/packages/scanner.scm (sane-backends)[inputs]: Add libpng. --- gnu/packages/scanner.scm | 1 + 1 file changed, 1 insertion(+) diff --git a/gnu/packages/scanner.scm b/gnu/packages/scanner.scm index 462727bc59..75f5525d3d 100644 --- a/gnu/packages/scanner.scm +++ b/gnu/packages/scanner.scm @@ -112,6 +112,7 @@ package contains the library, but no drivers.") (name "sane-backends") (inputs `(("hplip" ,(@ (gnu packages cups) hplip-minimal)) + ("libpng" ,libpng) ; support ‘scanimage --format=png’ ,@(package-inputs sane-backends-minimal))) (arguments (substitute-keyword-arguments (package-arguments sane-backends-minimal) From 6845ab5204b1b6b89282ea315d32a2f007578116 Mon Sep 17 00:00:00 2001 From: Tobias Geerinckx-Rice Date: Sun, 10 Mar 2019 17:11:55 +0100 Subject: [PATCH 187/194] gnu: Import (gnu packages image) in (gnu packages scanner). This is a follow-up to commit 10bd2889d267df479f79f43471d3c2dd17da345a. * gnu/packages/scanner.scm: #:use-module (gnu packages image). --- gnu/packages/scanner.scm | 1 + 1 file changed, 1 insertion(+) diff --git a/gnu/packages/scanner.scm b/gnu/packages/scanner.scm index 75f5525d3d..6539756a6e 100644 --- a/gnu/packages/scanner.scm +++ b/gnu/packages/scanner.scm @@ -26,6 +26,7 @@ #:use-module (guix utils) #:use-module (guix build-system gnu) #:use-module (gnu packages pkg-config) + #:use-module (gnu packages image) #:use-module (gnu packages libusb) #:use-module ((guix licenses) #:prefix licence:)) From f1fff66be563a88874516b928bcffc68ca5469c9 Mon Sep 17 00:00:00 2001 From: Marius Bakke Date: Sun, 10 Mar 2019 16:19:57 +0100 Subject: [PATCH 188/194] gnu: elogind: Update to 239.4. * gnu/packages/freedesktop.scm (elogind): Update to 239.4. --- gnu/packages/freedesktop.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/freedesktop.scm b/gnu/packages/freedesktop.scm index 7bb77ba283..93fc02cd4b 100644 --- a/gnu/packages/freedesktop.scm +++ b/gnu/packages/freedesktop.scm @@ -229,7 +229,7 @@ the freedesktop.org XDG Base Directory specification.") (define-public elogind (package (name "elogind") - (version "239.3") + (version "239.4") (source (origin (method git-fetch) (uri (git-reference @@ -238,7 +238,7 @@ the freedesktop.org XDG Base Directory specification.") (file-name (git-file-name name version)) (sha256 (base32 - "1gipnbnlz5k3gxv33wyhi2zd94hlfa9lm360p8z6w5i9s8dzhf52")))) + "106hld2fa89iz0d17gkmwvbkxc2yspn1klq73nvkj4878wx3vcr9")))) (build-system meson-build-system) (arguments `(#:configure-flags From 755226e9c245a38441bba73f3b50eb5c49f3c04b Mon Sep 17 00:00:00 2001 From: Marius Bakke Date: Sun, 10 Mar 2019 16:20:17 +0100 Subject: [PATCH 189/194] gnu: python-dask: Update to 1.1.4. * gnu/packages/python-xyz.scm (python-dask): Update to 1.1.4. --- gnu/packages/python-xyz.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index db4a2e0193..8406e33591 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -14718,14 +14718,14 @@ append on old values. Partd excels at shuffling operations.") (define-public python-dask (package (name "python-dask") - (version "1.1.3") + (version "1.1.4") (source (origin (method url-fetch) (uri (pypi-uri "dask" version)) (sha256 (base32 - "03ykmq46q2hh7mn68vcxkgylybjaj3r0kfspaiymdmqmjzpjivr5")))) + "1hrnfz4pzawikz9b622vjz2500n7hs25nz9msy1k8l4g7l2kr6ky")))) (build-system python-build-system) ;; A single test out of 5000+ fails. This test is marked as xfail when ;; pytest-xdist is used. From 511930c294feeaab65c2ae9983a8f4369f8f5c6b Mon Sep 17 00:00:00 2001 From: Marius Bakke Date: Sun, 10 Mar 2019 16:22:02 +0100 Subject: [PATCH 190/194] gnu: libmspack: Update to 0.10.1. * gnu/packages/compression.scm (libmspack): Update to 0.10.1. --- gnu/packages/compression.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm index 9dbe55695c..090c164e18 100644 --- a/gnu/packages/compression.scm +++ b/gnu/packages/compression.scm @@ -686,13 +686,13 @@ sfArk file format to the uncompressed sf2 format.") (package (name "libmspack") (home-page "https://cabextract.org.uk/libmspack/") - (version "0.9.1") + (version "0.10.1") (source (origin (method url-fetch) (uri (string-append home-page name "-" version "alpha.tar.gz")) (sha256 - (base32 "0h1f5w8rjnq7dcqpqm1mpx5m8q80691kid6f7npqlqwqqzckd8v2")))) + (base32 "13janaqsvm7aqc4agjgd4819pbgqv50j88bh5kci1z70wvg65j5s")))) (build-system gnu-build-system) (arguments `(#:configure-flags '("--disable-static"))) From 2c0cf9eec7f003fce6f7292069406d6772f2b3ca Mon Sep 17 00:00:00 2001 From: Marius Bakke Date: Sun, 10 Mar 2019 16:24:29 +0100 Subject: [PATCH 191/194] gnu: xapian: Update to 1.4.11. * gnu/packages/search.scm (xapian, python-xapian-bindings): Update to 1.4.11. --- gnu/packages/search.scm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gnu/packages/search.scm b/gnu/packages/search.scm index 8ee6b4d32f..9969cad8ac 100644 --- a/gnu/packages/search.scm +++ b/gnu/packages/search.scm @@ -47,14 +47,14 @@ (define-public xapian (package (name "xapian") - (version "1.4.10") + (version "1.4.11") ;; Note: When updating Xapian, remember to update xapian-bindings below. (source (origin (method url-fetch) (uri (string-append "https://oligarchy.co.uk/xapian/" version "/xapian-core-" version ".tar.xz")) (sha256 - (base32 "1f4vf1w1yvsn9mn462q6snc8wkmfpifp8wrlzs4aqi45w0kr6rk8")))) + (base32 "01xwqljnp5afjf9097lyfbqc6x5bcqszfdkn9l1j86imwbrv45lz")))) (build-system gnu-build-system) (inputs `(("zlib" ,zlib) ("util-linux" ,util-linux))) @@ -92,7 +92,7 @@ rich set of boolean query operators.") "/xapian-bindings-" version ".tar.xz")) (sha256 (base32 - "0zqx5gcwm2mhx41fnfx30z9c31x96g5pskyrmx3c556mnklfpask")))) + "13bi2vr5d39ys49nlwmsv64ik5pdwkz28bh08hyylrhanb45d8wx")))) (build-system gnu-build-system) (arguments `(#:configure-flags '("--with-python3") From df8dbfb30b74d01557a8481fb93e0191b05d2408 Mon Sep 17 00:00:00 2001 From: Marius Bakke Date: Sun, 10 Mar 2019 16:27:59 +0100 Subject: [PATCH 192/194] gnu: notmuch: Update to 0.28.3. * gnu/packages/mail.scm (notmuch): Update to 0.28.3. --- gnu/packages/mail.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm index fb8ca2d358..29ba1a92ef 100644 --- a/gnu/packages/mail.scm +++ b/gnu/packages/mail.scm @@ -839,14 +839,14 @@ invoking @command{notifymuch} from the post-new hook.") (define-public notmuch (package (name "notmuch") - (version "0.28.2") + (version "0.28.3") (source (origin (method url-fetch) (uri (string-append "https://notmuchmail.org/releases/notmuch-" version ".tar.gz")) (sha256 (base32 - "0cg9ff7h7mklgbqqknxigxxx1j3p3s2a9cxvrs5ih7j56f04k9l5")))) + "1v0ff6qqwj42p3n6qw30czzqi52nvgf3dn05vd7a03g39a5js8af")))) (build-system gnu-build-system) (arguments `(#:modules ((guix build gnu-build-system) From 06e3ed5d19e9c8b9925d798892311181bc10cfae Mon Sep 17 00:00:00 2001 From: Marius Bakke Date: Sun, 10 Mar 2019 16:29:21 +0100 Subject: [PATCH 193/194] gnu: xprop: Update to 1.2.4. * gnu/packages/xorg.scm (xprop): Update to 1.2.4. --- gnu/packages/xorg.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/xorg.scm b/gnu/packages/xorg.scm index aab6ec5786..59dc16560a 100644 --- a/gnu/packages/xorg.scm +++ b/gnu/packages/xorg.scm @@ -4153,7 +4153,7 @@ it for output on various types of printers.") (define-public xprop (package (name "xprop") - (version "1.2.3") + (version "1.2.4") (source (origin (method url-fetch) @@ -4163,7 +4163,7 @@ it for output on various types of printers.") ".tar.bz2")) (sha256 (base32 - "06sjgahjiz85v0k0pmv5x05chc591xynl5ah1bqzz1bdr0lgnanj")))) + "0lzp7kyhpwd5hm83j2zm6j3w3z1z5i4ykgg2nwr01ij6dq4znxwc")))) (build-system gnu-build-system) (inputs `(("xorgproto" ,xorgproto) From 41ce92501b53caa1dcf89fa81aed71dbf1f85d34 Mon Sep 17 00:00:00 2001 From: Marius Bakke Date: Sun, 10 Mar 2019 16:29:50 +0100 Subject: [PATCH 194/194] gnu: xfd: Update to 1.1.3. * gnu/packages/xorg.scm (xfd): Update to 1.1.3. --- gnu/packages/xorg.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/xorg.scm b/gnu/packages/xorg.scm index 59dc16560a..9bc23c4279 100644 --- a/gnu/packages/xorg.scm +++ b/gnu/packages/xorg.scm @@ -4025,7 +4025,7 @@ Font Description (XLFD) full name for a font.") (define-public xfd (package (name "xfd") - (version "1.1.2") + (version "1.1.3") (source (origin (method url-fetch) (uri (string-append @@ -4033,7 +4033,7 @@ Font Description (XLFD) full name for a font.") version ".tar.bz2")) (sha256 (base32 - "0n97iqqap9wyxjan2n520vh4rrf5bc0apsw2k9py94dqzci258y1")))) + "0n6r1v8sm0z0ycqch035xpm46nv5v4mav3kxh36883l3ln5r6bqr")))) (build-system gnu-build-system) (arguments `(#:configure-flags