gnu: Add multichoose.
* gnu/packages/bioinformatics.scm (multichoose): New variable.
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@ -14898,3 +14898,37 @@ some of the details of opening and jumping in tabix-indexed files.")
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(description "Implementation of the Smith-Waterman algorithm.")
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(description "Implementation of the Smith-Waterman algorithm.")
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;; The licensing terms are unclear: https://github.com/ekg/smithwaterman/issues/9.
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;; The licensing terms are unclear: https://github.com/ekg/smithwaterman/issues/9.
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(license (list license:gpl2 license:expat)))))
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(license (list license:gpl2 license:expat)))))
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(define-public multichoose
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(package
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(name "multichoose")
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(version "1.0.3")
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/ekg/multichoose/")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0ci5fqvmpamwgxvmyd79ygj6n3bnbl3vc7b6h1sxz58186sm3pfs"))))
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(build-system gnu-build-system)
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(arguments
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`(#:tests? #f ; Tests require node.
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#:phases
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(modify-phases %standard-phases
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(delete 'configure) ; There is no configure phase.
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(replace 'install
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((bin (string-append (assoc-ref outputs "out") "/bin")))
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;; TODO: There are Python modules for these programs too.
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(install-file "multichoose" bin)
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(install-file "multipermute" bin))
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#t)))))
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(home-page "https://github.com/ekg/multichoose")
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(synopsis "Efficient loopless multiset combination generation algorithm")
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(description "This library implements an efficient loopless multiset
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combination generation algorithm which is (approximately) described in
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\"Loopless algorithms for generating permutations, combinations, and other
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combinatorial configurations.\", G. Ehrlich - Journal of the ACM (JACM),
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1973. (Algorithm 7.)")
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(license license:expat)))
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