gnu: Add aragorn.
* gnu/packages/bioinformatics.scm (aragorn): New variable.
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@ -54,6 +54,54 @@
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#:use-module (gnu packages xml)
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#:use-module (gnu packages xml)
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#:use-module (gnu packages zip))
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#:use-module (gnu packages zip))
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(define-public aragorn
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(package
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(name "aragorn")
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(version "1.2.36")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"http://mbio-serv2.mbioekol.lu.se/ARAGORN/Downloads/aragorn"
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version ".tgz"))
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(sha256
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(base32
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"1dg7jlz1qpqy88igjxd6ncs11ccsirb36qv1z01a0np4i4jh61mb"))))
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(build-system gnu-build-system)
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(arguments
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`(#:tests? #f ; there are no tests
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#:phases
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(modify-phases %standard-phases
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(delete 'configure)
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(replace 'build
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(lambda _
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(zero? (system* "gcc"
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"-O3"
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"-ffast-math"
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"-finline-functions"
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"-o"
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"aragorn"
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(string-append "aragorn" ,version ".c")))))
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(replace 'install
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(lambda* (#:key outputs #:allow-other-keys)
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(let* ((out (assoc-ref outputs "out"))
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(bin (string-append out "/bin"))
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(man (string-append out "/share/man/man1")))
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(mkdir-p bin)
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(copy-file "aragorn"
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(string-append bin "/aragorn"))
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(mkdir-p man)
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(copy-file "aragorn.1"
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(string-append man "/aragorn.1")))
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#t)))))
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(home-page "http://mbio-serv2.mbioekol.lu.se/ARAGORN")
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(synopsis "Detect tRNA, mtRNA and tmRNA genes in nucleotide sequences")
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(description
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"Aragorn identifies transfer RNA, mitochondrial RNA and
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transfer-messenger RNA from nucleotide sequences, based on homology to known
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tRNA consensus sequences and RNA structure. It also outputs the secondary
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structure of the predicted RNA.")
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(license license:gpl2)))
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(define-public bamtools
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(define-public bamtools
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(package
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(package
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(name "bamtools")
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(name "bamtools")
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