gnu: Add r-bsgenome-celegans-ucsc-ce6.

* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce6): New
  variable.
This commit is contained in:
Ricardo Wurmus 2016-03-30 12:24:16 +02:00
parent a3e9028770
commit 943bd6279f
1 changed files with 32 additions and 0 deletions

View File

@ -4831,6 +4831,38 @@ by UCSC (hg19, February 2009) and stored in Biostrings objects.")
provided by UCSC (mm9, July 2007) and stored in Biostrings objects.") provided by UCSC (mm9, July 2007) and stored in Biostrings objects.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-bsgenome-celegans-ucsc-ce6
(package
(name "r-bsgenome-celegans-ucsc-ce6")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "http://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Celegans.UCSC.ce6_"
version ".tar.gz"))
(sha256
(base32
"0mqzb353xv2c3m3vkb315dkmnxkgczp7ndnknyhpgjlybyf715v9"))))
(properties
`((upstream-name . "BSgenome.Celegans.UCSC.ce6")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"http://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce6/")
(synopsis "Full genome sequences for Worm")
(description
"This package provides full genome sequences for Caenorhabditis
elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings
objects.")
(license license:artistic2.0)))
(define-public r-motifrg (define-public r-motifrg
(package (package
(name "r-motifrg") (name "r-motifrg")