gnu: Add r-psiplot.

* gnu/packages/bioinformatics.scm (r-psiplot): New variable.
master
Ricardo Wurmus 2019-06-11 13:39:38 +02:00
parent bf3005346e
commit 944cb87a33
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1 changed files with 31 additions and 0 deletions

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@ -14755,3 +14755,34 @@ ATAC-seq results. It was written to make it easier to spot differences that
might be caused by ATAC-seq library prep or sequencing. The main program,
@code{ataqv}, examines aligned reads and reports some basic metrics.")
(license license:gpl3+)))
(define-public r-psiplot
(package
(name "r-psiplot")
(version "2.3.0")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/kcha/psiplot.git")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "08438h16cfry5kqh3y9hs8q1b1a8bxhblsm75knviz5r6q0n1jxh"))))
(build-system r-build-system)
(propagated-inputs
`(("r-mass" ,r-mass)
("r-dplyr" ,r-dplyr)
("r-tidyr" ,r-tidyr)
("r-purrr" ,r-purrr)
("r-readr" ,r-readr)
("r-magrittr" ,r-magrittr)
("r-ggplot2" ,r-ggplot2)))
(home-page "https://github.com/kcha/psiplot")
(synopsis "Plot percent spliced-in values of alternatively-spliced exons")
(description
"PSIplot is an R package for generating plots of @dfn{percent
spliced-in} (PSI) values of alternatively-spliced exons that were computed by
vast-tools, an RNA-Seq pipeline for alternative splicing analysis. The plots
are generated using @code{ggplot2}.")
(license license:expat)))