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gnu: python2-dendropy: Fix tests. 

* gnu/packages/bioinformatics.scm (python2-dendropy)[source]: Use unpatched
source.
[arguments]: Use nose to run tests.
[native-inputs]: Add python2-nose.
This commit is contained in:
Ben Woodcroft 2016-10-08 21:33:43 +10:00
parent f803f775d2
commit 9602e3cce9
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1 changed files with 18 additions and 0 deletions
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gnu/packages/bioinformatics.scm
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@ -1972,7 +1972,25 @@ trees (phylogenies) and characters.")
(let ((base (package-with-python2 (strip-python2-variant python-dendropy)))) (let ((base (package-with-python2 (strip-python2-variant python-dendropy))))
(package (package
(inherit base) (inherit base)
;; Do not use same source as 'python-dendropy' because the patched
;; failing tests do not occur on Python 2.
(source
(origin
(method url-fetch)
(uri (pypi-uri "DendroPy" (package-version base)))
(sha256
(base32
"1jfz7gp18wph311w1yygbvjanb3n5mdqal439bb6myw41dwb5m63"))))
(arguments
`(#:python ,python-2
#:phases
(modify-phases %standard-phases
(replace 'check
;; There is currently a test failure that only happens on some
;; systems, and only using "setup.py test"
(lambda _ (zero? (system* "nosetests")))))))
(native-inputs `(("python2-setuptools" ,python2-setuptools) (native-inputs `(("python2-setuptools" ,python2-setuptools)
("python2-nose" ,python2-nose)
,@(package-native-inputs base)))))) ,@(package-native-inputs base))))))