gnu: Add bpp-core.

* gnu/packages/bioinformatics.scm (bpp-core): New variable.
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Ben Woodcroft 2016-07-12 15:58:31 +10:00
parent 791c11d6a0
commit 985d841144
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@ -522,6 +522,39 @@ into separate processes; and more.")
(inputs (inputs
`(("python2-numpy" ,python2-numpy))))) `(("python2-numpy" ,python2-numpy)))))
(define-public bpp-core
;; The last release was in 2014 and the recommended way to install from source
;; is to clone the git repository, so we do this.
;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
(let ((commit "7d8bced0d1a87291ea8dd7046b7fb5ff9c35c582"))
(package
(name "bpp-core")
(version (string-append "2.2.0-1." (string-take commit 7)))
(source (origin
(method git-fetch)
(uri (git-reference
(url "http://biopp.univ-montp2.fr/git/bpp-core")
(commit commit)))
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
"10djsq5vlnkilv436gnmh4irpk49v29pa69r6xiryg32xmvn909j"))))
(build-system cmake-build-system)
(arguments
`(#:parallel-build? #f))
(inputs
`(("gcc" ,gcc-5))) ; Compilation of bpp-phyl fails with GCC 4.9 so we
; compile all of the bpp packages with GCC 5.
(home-page "http://biopp.univ-montp2.fr")
(synopsis "C++ libraries for Bioinformatics")
(description
"Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics. It is
Object Oriented and is designed to be both easy to use and computer efficient.
Bio++ intends to help programmers to write computer expensive programs, by
providing them a set of re-usable tools.")
(license license:cecill-c))))
(define-public blast+ (define-public blast+
(package (package
(name "blast+") (name "blast+")