gnu: Add bpp-core.
* gnu/packages/bioinformatics.scm (bpp-core): New variable.
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@ -522,6 +522,39 @@ into separate processes; and more.")
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(inputs
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`(("python2-numpy" ,python2-numpy)))))
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(define-public bpp-core
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;; The last release was in 2014 and the recommended way to install from source
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;; is to clone the git repository, so we do this.
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;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
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(let ((commit "7d8bced0d1a87291ea8dd7046b7fb5ff9c35c582"))
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(package
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(name "bpp-core")
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(version (string-append "2.2.0-1." (string-take commit 7)))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "http://biopp.univ-montp2.fr/git/bpp-core")
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(commit commit)))
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(file-name (string-append name "-" version "-checkout"))
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(sha256
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(base32
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"10djsq5vlnkilv436gnmh4irpk49v29pa69r6xiryg32xmvn909j"))))
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(build-system cmake-build-system)
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(arguments
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`(#:parallel-build? #f))
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(inputs
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`(("gcc" ,gcc-5))) ; Compilation of bpp-phyl fails with GCC 4.9 so we
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; compile all of the bpp packages with GCC 5.
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(home-page "http://biopp.univ-montp2.fr")
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(synopsis "C++ libraries for Bioinformatics")
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(description
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"Bio++ is a set of C++ libraries for Bioinformatics, including sequence
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analysis, phylogenetics, molecular evolution and population genetics. It is
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Object Oriented and is designed to be both easy to use and computer efficient.
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Bio++ intends to help programmers to write computer expensive programs, by
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providing them a set of re-usable tools.")
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(license license:cecill-c))))
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(define-public blast+
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(package
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(name "blast+")
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