gnu: Add r-sctransform.
* gnu/packages/cran.scm (r-sctransform): New variable.
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@ -13888,3 +13888,35 @@ regular expressions. Regular expressions are a very powerful feature, however
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they are often difficult to interpret. Rex allows you to build complex
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they are often difficult to interpret. Rex allows you to build complex
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regular expressions from human readable expressions")
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regular expressions from human readable expressions")
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(license license:expat)))
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(license license:expat)))
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(define-public r-sctransform
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(package
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(name "r-sctransform")
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(version "0.2.0")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "sctransform" version))
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(sha256
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(base32
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"1r5kiqqs318q59h2i8m7c6nhghp9w6q26ss2y5a390lkhsawgx6p"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-future" ,r-future)
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("r-future-apply" ,r-future-apply)
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("r-ggplot2" ,r-ggplot2)
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("r-gridextra" ,r-gridextra)
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("r-mass" ,r-mass)
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("r-matrix" ,r-matrix)
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("r-rcpp" ,r-rcpp)
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("r-rcppeigen" ,r-rcppeigen)
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("r-reshape2" ,r-reshape2)))
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(home-page "https://github.com/ChristophH/sctransform")
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(synopsis "Variance stabilizing transformations for Single Cell UMI Data")
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(description
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"This package provides a normalization method for single-cell UMI count
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data using a variance stabilizing transformation. The transformation is based
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on a negative binomial regression model with regularized parameters. As part
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of the same regression framework, this package also provides functions for
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batch correction, and data correction.")
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(license license:gpl3)))
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