gnu: Add r-sctransform.

* gnu/packages/cran.scm (r-sctransform): New variable.
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Ricardo Wurmus 2019-04-19 15:38:25 +02:00
parent 7015ae6881
commit 9b86fea05f
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@ -13888,3 +13888,35 @@ regular expressions. Regular expressions are a very powerful feature, however
they are often difficult to interpret. Rex allows you to build complex they are often difficult to interpret. Rex allows you to build complex
regular expressions from human readable expressions") regular expressions from human readable expressions")
(license license:expat))) (license license:expat)))
(define-public r-sctransform
(package
(name "r-sctransform")
(version "0.2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "sctransform" version))
(sha256
(base32
"1r5kiqqs318q59h2i8m7c6nhghp9w6q26ss2y5a390lkhsawgx6p"))))
(build-system r-build-system)
(propagated-inputs
`(("r-future" ,r-future)
("r-future-apply" ,r-future-apply)
("r-ggplot2" ,r-ggplot2)
("r-gridextra" ,r-gridextra)
("r-mass" ,r-mass)
("r-matrix" ,r-matrix)
("r-rcpp" ,r-rcpp)
("r-rcppeigen" ,r-rcppeigen)
("r-reshape2" ,r-reshape2)))
(home-page "https://github.com/ChristophH/sctransform")
(synopsis "Variance stabilizing transformations for Single Cell UMI Data")
(description
"This package provides a normalization method for single-cell UMI count
data using a variance stabilizing transformation. The transformation is based
on a negative binomial regression model with regularized parameters. As part
of the same regression framework, this package also provides functions for
batch correction, and data correction.")
(license license:gpl3)))