gnu: Add r-abaenrichment.
* gnu/packages/bioconductor.scm (r-abaenrichment): New variable.
This commit is contained in:
parent
3972cfce6a
commit
9bf4bb19c9
|
@ -3430,3 +3430,33 @@ the annotations, and options to take gene-length or spatial clustering of
|
|||
genes into account. It is also possible to provide custom gene coordinates,
|
||||
annotations and ontologies.")
|
||||
(license license:gpl2+)))
|
||||
|
||||
(define-public r-abaenrichment
|
||||
(package
|
||||
(name "r-abaenrichment")
|
||||
(version "1.12.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (bioconductor-uri "ABAEnrichment" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0bvanqmg1smyckh16m2qn7d68zq4j7n74sgsnbgms5jngbp9158v"))))
|
||||
(properties `((upstream-name . "ABAEnrichment")))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
`(("r-abadata" ,r-abadata)
|
||||
("r-data-table" ,r-data-table)
|
||||
("r-gofuncr" ,r-gofuncr)
|
||||
("r-gplots" ,r-gplots)
|
||||
("r-gtools" ,r-gtools)
|
||||
("r-rcpp" ,r-rcpp)))
|
||||
(home-page "https://bioconductor.org/packages/ABAEnrichment/")
|
||||
(synopsis "Gene expression enrichment in human brain regions")
|
||||
(description
|
||||
"The package ABAEnrichment is designed to test for enrichment of user
|
||||
defined candidate genes in the set of expressed genes in different human brain
|
||||
regions. The core function @code{aba_enrich} integrates the expression of the
|
||||
candidate gene set (averaged across donors) and the structural information of
|
||||
the brain using an ontology, both provided by the Allen Brain Atlas project.")
|
||||
(license license:gpl2+)))
|
||||
|
|
Loading…
Reference in New Issue