gnu: Add bio-locus.
* gnu/packages/bioinformatics.scm (bio-locus): New variable.
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@ -27,6 +27,7 @@
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#:use-module (guix build-system cmake)
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#:use-module (guix build-system cmake)
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#:use-module (guix build-system perl)
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#:use-module (guix build-system perl)
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#:use-module (guix build-system python)
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#:use-module (guix build-system python)
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#:use-module (guix build-system ruby)
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#:use-module (guix build-system trivial)
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#:use-module (guix build-system trivial)
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#:use-module (gnu packages)
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#:use-module (gnu packages)
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#:use-module (gnu packages algebra)
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#:use-module (gnu packages algebra)
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@ -45,6 +46,7 @@
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#:use-module (gnu packages popt)
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#:use-module (gnu packages popt)
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#:use-module (gnu packages protobuf)
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#:use-module (gnu packages protobuf)
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#:use-module (gnu packages python)
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#:use-module (gnu packages python)
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#:use-module (gnu packages ruby)
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#:use-module (gnu packages statistics)
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#:use-module (gnu packages statistics)
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#:use-module (gnu packages tbb)
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#:use-module (gnu packages tbb)
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#:use-module (gnu packages textutils)
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#:use-module (gnu packages textutils)
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@ -2616,3 +2618,27 @@ data in the form of VCF files.")
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;; The license is declared as LGPLv3 in the README and
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;; The license is declared as LGPLv3 in the README and
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;; at http://vcftools.sourceforge.net/license.html
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;; at http://vcftools.sourceforge.net/license.html
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(license license:lgpl3)))
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(license license:lgpl3)))
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(define-public bio-locus
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(package
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(name "bio-locus")
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(version "0.0.7")
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(source
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(origin
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(method url-fetch)
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(uri (rubygems-uri "bio-locus" version))
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(sha256
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(base32
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"02vmrxyimkj9sahsp4zhfhnmbvz6dbbqz1y01vglf8cbwvkajfl0"))))
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(build-system ruby-build-system)
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(native-inputs
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`(("ruby-rspec" ,ruby-rspec)))
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(synopsis "Tool for fast querying of genome locations")
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(description
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"Bio-locus is a tabix-like tool for fast querying of genome
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locations. Many file formats in bioinformatics contain records that
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start with a chromosome name and a position for a SNP, or a start-end
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position for indels. Bio-locus allows users to store this chr+pos or
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chr+pos+alt information in a database.")
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(home-page "https://github.com/pjotrp/bio-locus")
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(license license:expat)))
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