gnu: Add fastp.
* gnu/packages/bioinformatics.scm (fastp): New variable.
This commit is contained in:
parent
26bcd2a2b2
commit
a1b802454a
|
@ -3450,6 +3450,42 @@ The main functions of FastQC are:
|
|||
@end itemize\n")
|
||||
(license license:gpl3+)))
|
||||
|
||||
(define-public fastp
|
||||
(package
|
||||
(name "fastp")
|
||||
(version "0.14.1")
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/OpenGene/fastp.git")
|
||||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32
|
||||
"1r6ms5zbf5rps4rgp4z73nczadl00b5rqylw8f684isfz27dp0xh"))))
|
||||
(build-system gnu-build-system)
|
||||
(arguments
|
||||
`(#:tests? #f ; there are none
|
||||
#:make-flags
|
||||
(list (string-append "BINDIR=" (assoc-ref %outputs "out") "/bin"))
|
||||
#:phases
|
||||
(modify-phases %standard-phases
|
||||
(delete 'configure)
|
||||
(add-before 'install 'create-target-dir
|
||||
(lambda* (#:key outputs #:allow-other-keys)
|
||||
(mkdir-p (string-append (assoc-ref outputs "out") "/bin"))
|
||||
#t)))))
|
||||
(inputs
|
||||
`(("zlib" ,zlib)))
|
||||
(home-page "https://github.com/OpenGene/fastp/")
|
||||
(synopsis "All-in-one FastQ preprocessor")
|
||||
(description
|
||||
"Fastp is a tool designed to provide fast all-in-one preprocessing for
|
||||
FastQ files. This tool has multi-threading support to afford high
|
||||
performance.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public htslib
|
||||
(package
|
||||
(name "htslib")
|
||||
|
|
Loading…
Reference in New Issue