nixo
/
guix-devel
1
0
Fork 0
Code Issues Pull Requests Releases Wiki Activity

gnu: r-rcas: Update to 1.8.0. 

* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.8.0.
[native-inputs]: Remove r-testthat and ghc-pandoc-citeproc.
[propagated-inputs]: Add r-annotationdbi, r-genomeinfodb, and r-genomicranges;
remove r-bsgenome-mmusculus-ucsc-mm9, r-bsgenome-celegans-ucsc-ce10,
r-bsgenome-dmelanogaster-ucsc-dm3, r-org-ce-eg-db, r-org-dm-eg-db, and
r-org-mm-eg-db.
This commit is contained in:
Ricardo Wurmus 2018-11-07 12:22:08 +01:00
parent 900ce2bafd
commit a1c2bf8e54
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
1 changed files with 6 additions and 14 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

20
gnu/packages/bioinformatics.scm
View File

@ -8641,41 +8641,33 @@ paired-end data.")
(define-public r-rcas
(package
(name "r-rcas")
(version "1.6.0")
(version "1.8.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "RCAS" version))
(sha256
(base32
"0vmn7a0rm2ban0kaxrf5danhss2r4hfhnwh5889fjcgqy300fdd5"))))
"0ss5hcg2m7gjji6dd23zxa5bd5a7knwcnada4qs5q2l4clgk39ad"))))
(build-system r-build-system)
(native-inputs
`(("r-testthat" ,r-testthat)
;; During vignette building knitr checks that "pandoc-citeproc"
;; is in the PATH.
("ghc-pandoc-citeproc" ,ghc-pandoc-citeproc)))
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
`(("r-annotationdbi" ,r-annotationdbi)
("r-biocgenerics" ,r-biocgenerics)
("r-biomart" ,r-biomart)
("r-biostrings" ,r-biostrings)
("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
("r-bsgenome-mmusculus-ucsc-mm9" ,r-bsgenome-mmusculus-ucsc-mm9)
("r-bsgenome-celegans-ucsc-ce10" ,r-bsgenome-celegans-ucsc-ce10)
("r-bsgenome-dmelanogaster-ucsc-dm3" ,r-bsgenome-dmelanogaster-ucsc-dm3)
("r-cowplot" ,r-cowplot)
("r-data-table" ,r-data-table)
("r-dbi" ,r-dbi)
("r-dt" ,r-dt)
("r-genomation" ,r-genomation)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-ggseqlogo" ,r-ggseqlogo)
("r-knitr" ,r-knitr)
("r-motifrg" ,r-motifrg)
("r-org-hs-eg-db" ,r-org-hs-eg-db)
("r-org-ce-eg-db" ,r-org-ce-eg-db)
("r-org-dm-eg-db" ,r-org-dm-eg-db)
("r-org-mm-eg-db" ,r-org-mm-eg-db)
("r-pbapply" ,r-pbapply)
("r-pheatmap" ,r-pheatmap)
("r-plotly" ,r-plotly)