gnu: Add r-interactionset.
* gnu/packages/bioconductor.scm (r-interactionset): New variable.
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@ -603,3 +603,35 @@ assessment, principal component analysis on codon coverage.")
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"This package provides plotting functions, frameshift detection and
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"This package provides plotting functions, frameshift detection and
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parsing of genetic sequencing data from ribosome profiling experiments.")
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parsing of genetic sequencing data from ribosome profiling experiments.")
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(license license:gpl3)))
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(license license:gpl3)))
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(define-public r-interactionset
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(package
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(name "r-interactionset")
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(version "1.8.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "InteractionSet" version))
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(sha256
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(base32
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"0xngraq7ic80jr98i1wqp8bxdgidq6py60m2wfk82n1ixpcdck8n"))))
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(properties
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`((upstream-name . "InteractionSet")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-matrix" ,r-matrix)
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("r-rcpp" ,r-rcpp)
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("r-s4vectors" ,r-s4vectors)
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("r-summarizedexperiment" ,r-summarizedexperiment)))
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(home-page "https://bioconductor.org/packages/InteractionSet")
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(synopsis "Base classes for storing genomic interaction data")
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(description
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"This packages provides the @code{GInteractions},
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@code{InteractionSet} and @code{ContactMatrix} objects and associated methods
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for storing and manipulating genomic interaction data from Hi-C and ChIA-PET
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experiments.")
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(license license:gpl3)))
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