gnu: Add r-interactionset.

* gnu/packages/bioconductor.scm (r-interactionset): New variable.
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Ricardo Wurmus 2018-06-15 08:21:01 +02:00
parent 056402220e
commit a32279ffb6
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@ -603,3 +603,35 @@ assessment, principal component analysis on codon coverage.")
"This package provides plotting functions, frameshift detection and "This package provides plotting functions, frameshift detection and
parsing of genetic sequencing data from ribosome profiling experiments.") parsing of genetic sequencing data from ribosome profiling experiments.")
(license license:gpl3))) (license license:gpl3)))
(define-public r-interactionset
(package
(name "r-interactionset")
(version "1.8.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "InteractionSet" version))
(sha256
(base32
"0xngraq7ic80jr98i1wqp8bxdgidq6py60m2wfk82n1ixpcdck8n"))))
(properties
`((upstream-name . "InteractionSet")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-matrix" ,r-matrix)
("r-rcpp" ,r-rcpp)
("r-s4vectors" ,r-s4vectors)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(home-page "https://bioconductor.org/packages/InteractionSet")
(synopsis "Base classes for storing genomic interaction data")
(description
"This packages provides the @code{GInteractions},
@code{InteractionSet} and @code{ContactMatrix} objects and associated methods
for storing and manipulating genomic interaction data from Hi-C and ChIA-PET
experiments.")
(license license:gpl3)))