gnu: netcdf: Upgrade to 4.4.1.1.

* gnu/packages/maths.scm (netcdf, netcdf-parallel-openmpi): Upgrade to
4.4.1.1.
[source]: Adjust patch name, add netcdf-tst_h_par.patch
* gnu/packages/patches/netcdf-config.date.patch: Rename to...
* gnu/packages/patches/netcdf-date-time.patch: ...this.  Adjust for
latest source.
* gnu/packages/patches/netcdf-tst_h_par.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Adjust patches.
master
Eric Bavier 2016-11-30 21:26:01 -06:00
parent b45baef156
commit a4b0bfb195
No known key found for this signature in database
GPG Key ID: 1EBBD204781F962C
5 changed files with 38 additions and 51 deletions

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@ -745,7 +745,8 @@ dist_patch_DATA = \
%D%/packages/patches/musl-CVE-2016-8859.patch \
%D%/packages/patches/mutt-store-references.patch \
%D%/packages/patches/net-tools-bitrot.patch \
%D%/packages/patches/netcdf-config-date.patch \
%D%/packages/patches/netcdf-date-time.patch \
%D%/packages/patches/netcdf-tst_h_par.patch \
%D%/packages/patches/netsurf-about.patch \
%D%/packages/patches/ngircd-handle-zombies.patch \
%D%/packages/patches/ngircd-no-dns-in-tests.patch \

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@ -714,7 +714,7 @@ HDF5 file is encoded according to the HDF File Format Specification.")
(define-public netcdf
(package
(name "netcdf")
(version "4.4.0")
(version "4.4.1.1")
(source
(origin
(method url-fetch)
@ -722,8 +722,9 @@ HDF5 file is encoded according to the HDF File Format Specification.")
"netcdf-" version ".tar.gz"))
(sha256
(base32
"0y6gdcplarwqqnrav2xg1xd6ih732rzzbmdw78v3rl5b8mwcnh0d"))
(patches (list (search-patch "netcdf-config-date.patch")))))
"1blc7ik5yin7i0ls2kag0a9xjk12m0dzx6v1x88az3ras3scci2d"))
(patches (search-patches "netcdf-date-time.patch"
"netcdf-tst_h_par.patch"))))
(build-system gnu-build-system)
(native-inputs
`(("m4" ,m4)

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@ -1,47 +0,0 @@
Honor SOURCE_DATE_EPOCH when exporting configuration date.
Autoconf-level patch submitted upstream on Fri Apr 15 23:07:42 UTC 2016
--- a/configure
+++ b/configure
@@ -2866,7 +2866,17 @@
# Configuration Date
- CONFIG_DATE="`date`"
+ CONFIG_DATE="`date -u`"
+if test -n "$SOURCE_DATE_EPOCH"; then
+ CONFIG_DATE=`date -u -d "@$SOURCE_DATE_EPOCH" 2>/dev/null \
+ || date -u -r "$SOURCE_DATE_EPOCH" 2>/dev/null`
+ if test -z "$CONFIG_DATE"; then
+ as_fn_error $? "malformed SOURCE_DATE_EPOCH" "$LINENO" 5
+ fi
+fi
+cat >>confdefs.h <<_ACEOF
+#define CONFIG_DATE "$CONFIG_DATE"
+_ACEOF
# Find out about the host we're building on.
ac_aux_dir=
--- a/libdispatch/derror.c
+++ b/libdispatch/derror.c
@@ -13,7 +13,7 @@
#endif
/* Tell the user the version of netCDF. */
-static const char nc_libvers[] = PACKAGE_VERSION " of "__DATE__" "__TIME__" $";
+static const char nc_libvers[] = PACKAGE_VERSION " of "CONFIG_DATE" $";
/**
\defgroup lib_version Library Version
--- a/config.h.in
+++ b/config.h.in
@@ -393,6 +393,9 @@
/* Define to the version of this package. */
#undef PACKAGE_VERSION
+/* Define to the configuration date */
+#undef CONFIG_DATE
+
/* The size of `double', as computed by sizeof. */
#undef SIZEOF_DOUBLE

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@ -0,0 +1,11 @@
--- a/libdispatch/derror.c
+++ b/libdispatch/derror.c
@@ -13,7 +13,7 @@
#endif
/* Tell the user the version of netCDF. */
-static const char nc_libvers[] = PACKAGE_VERSION " of "__DATE__" "__TIME__" $";
+static const char nc_libvers[] = PACKAGE_VERSION" $";
/**
\defgroup lib_version Library Version

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@ -0,0 +1,21 @@
From a83702834938b23cc2e843589aa223e2024a7e6f Mon Sep 17 00:00:00 2001
From: Orion Poplawski <orion@cora.nwra.com>
Date: Tue, 29 Nov 2016 11:48:01 -0700
Subject: [PATCH] Add missing #include "err_macros.h" to tst_h_par.c
---
h5_test/tst_h_par.c | 1 +
1 file changed, 1 insertion(+)
diff --git a/h5_test/tst_h_par.c b/h5_test/tst_h_par.c
index c3da7f4..a419d55 100644
--- a/h5_test/tst_h_par.c
+++ b/h5_test/tst_h_par.c
@@ -11,6 +11,7 @@
$Id: tst_h_par.c,v 1.15 2010/05/25 13:53:04 ed Exp $
*/
#include <nc_tests.h>
+#include "err_macros.h"
#include <hdf5.h>
/* Defining USE_MPE causes the MPE trace library to be used (and you