gnu: netcdf: Upgrade to 4.4.1.1.
* gnu/packages/maths.scm (netcdf, netcdf-parallel-openmpi): Upgrade to 4.4.1.1. [source]: Adjust patch name, add netcdf-tst_h_par.patch * gnu/packages/patches/netcdf-config.date.patch: Rename to... * gnu/packages/patches/netcdf-date-time.patch: ...this. Adjust for latest source. * gnu/packages/patches/netcdf-tst_h_par.patch: New patch. * gnu/local.mk (dist_patch_DATA): Adjust patches.
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@ -745,7 +745,8 @@ dist_patch_DATA = \
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%D%/packages/patches/musl-CVE-2016-8859.patch \
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%D%/packages/patches/mutt-store-references.patch \
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%D%/packages/patches/net-tools-bitrot.patch \
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%D%/packages/patches/netcdf-config-date.patch \
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%D%/packages/patches/netcdf-date-time.patch \
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%D%/packages/patches/netcdf-tst_h_par.patch \
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%D%/packages/patches/netsurf-about.patch \
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%D%/packages/patches/ngircd-handle-zombies.patch \
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%D%/packages/patches/ngircd-no-dns-in-tests.patch \
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@ -714,7 +714,7 @@ HDF5 file is encoded according to the HDF File Format Specification.")
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(define-public netcdf
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(package
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(name "netcdf")
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(version "4.4.0")
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(version "4.4.1.1")
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(source
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(origin
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(method url-fetch)
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@ -722,8 +722,9 @@ HDF5 file is encoded according to the HDF File Format Specification.")
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"netcdf-" version ".tar.gz"))
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(sha256
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(base32
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"0y6gdcplarwqqnrav2xg1xd6ih732rzzbmdw78v3rl5b8mwcnh0d"))
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(patches (list (search-patch "netcdf-config-date.patch")))))
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"1blc7ik5yin7i0ls2kag0a9xjk12m0dzx6v1x88az3ras3scci2d"))
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(patches (search-patches "netcdf-date-time.patch"
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"netcdf-tst_h_par.patch"))))
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(build-system gnu-build-system)
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(native-inputs
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`(("m4" ,m4)
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@ -1,47 +0,0 @@
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Honor SOURCE_DATE_EPOCH when exporting configuration date.
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Autoconf-level patch submitted upstream on Fri Apr 15 23:07:42 UTC 2016
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--- a/configure
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+++ b/configure
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@@ -2866,7 +2866,17 @@
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# Configuration Date
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- CONFIG_DATE="`date`"
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+ CONFIG_DATE="`date -u`"
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+if test -n "$SOURCE_DATE_EPOCH"; then
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+ CONFIG_DATE=`date -u -d "@$SOURCE_DATE_EPOCH" 2>/dev/null \
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+ || date -u -r "$SOURCE_DATE_EPOCH" 2>/dev/null`
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+ if test -z "$CONFIG_DATE"; then
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+ as_fn_error $? "malformed SOURCE_DATE_EPOCH" "$LINENO" 5
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+ fi
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+fi
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+cat >>confdefs.h <<_ACEOF
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+#define CONFIG_DATE "$CONFIG_DATE"
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+_ACEOF
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# Find out about the host we're building on.
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ac_aux_dir=
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--- a/libdispatch/derror.c
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+++ b/libdispatch/derror.c
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@@ -13,7 +13,7 @@
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#endif
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/* Tell the user the version of netCDF. */
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-static const char nc_libvers[] = PACKAGE_VERSION " of "__DATE__" "__TIME__" $";
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+static const char nc_libvers[] = PACKAGE_VERSION " of "CONFIG_DATE" $";
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/**
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\defgroup lib_version Library Version
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--- a/config.h.in
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+++ b/config.h.in
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@@ -393,6 +393,9 @@
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/* Define to the version of this package. */
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#undef PACKAGE_VERSION
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+/* Define to the configuration date */
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+#undef CONFIG_DATE
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+
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/* The size of `double', as computed by sizeof. */
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#undef SIZEOF_DOUBLE
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@ -0,0 +1,11 @@
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--- a/libdispatch/derror.c
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+++ b/libdispatch/derror.c
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@@ -13,7 +13,7 @@
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#endif
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/* Tell the user the version of netCDF. */
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-static const char nc_libvers[] = PACKAGE_VERSION " of "__DATE__" "__TIME__" $";
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+static const char nc_libvers[] = PACKAGE_VERSION" $";
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/**
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\defgroup lib_version Library Version
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@ -0,0 +1,21 @@
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From a83702834938b23cc2e843589aa223e2024a7e6f Mon Sep 17 00:00:00 2001
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From: Orion Poplawski <orion@cora.nwra.com>
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Date: Tue, 29 Nov 2016 11:48:01 -0700
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Subject: [PATCH] Add missing #include "err_macros.h" to tst_h_par.c
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---
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h5_test/tst_h_par.c | 1 +
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1 file changed, 1 insertion(+)
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diff --git a/h5_test/tst_h_par.c b/h5_test/tst_h_par.c
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index c3da7f4..a419d55 100644
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--- a/h5_test/tst_h_par.c
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+++ b/h5_test/tst_h_par.c
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@@ -11,6 +11,7 @@
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$Id: tst_h_par.c,v 1.15 2010/05/25 13:53:04 ed Exp $
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*/
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#include <nc_tests.h>
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+#include "err_macros.h"
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#include <hdf5.h>
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/* Defining USE_MPE causes the MPE trace library to be used (and you
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