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gnu: Add R/qtl. 

* gnu/packages/bioinformatics.scm (r-qtl): New variable.

Co-authored-by: Pjotr Prins <pjotr.guix@thebird.nl>
This commit is contained in:
Andreas Enge 2015-09-20 00:32:45 +02:00
parent e49b339608
commit a5002ae77c
1 changed files with 28 additions and 0 deletions
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28
gnu/packages/bioinformatics.scm
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@ -1,6 +1,8 @@
;;; GNU Guix --- Functional package management for GNU ;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014, 2015 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2014, 2015 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015 Ben Woodcroft <donttrustben@gmail.com> ;;; Copyright © 2015 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2015 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
;;; ;;;
;;; This file is part of GNU Guix. ;;; This file is part of GNU Guix.
;;; ;;;
@ -27,6 +29,7 @@
#:use-module (guix build-system cmake) #:use-module (guix build-system cmake)
#:use-module (guix build-system perl) #:use-module (guix build-system perl)
#:use-module (guix build-system python) #:use-module (guix build-system python)
#:use-module (guix build-system r)
#:use-module (guix build-system ruby) #:use-module (guix build-system ruby)
#:use-module (guix build-system trivial) #:use-module (guix build-system trivial)
#:use-module (gnu packages) #:use-module (gnu packages)
@ -2743,3 +2746,28 @@ BLAST, KEGG, GenBank, MEDLINE and GO.")
;; Code is released under Ruby license, except for setup ;; Code is released under Ruby license, except for setup
;; (LGPLv2.1+) and scripts in samples (which have GPL2 and GPL2+) ;; (LGPLv2.1+) and scripts in samples (which have GPL2 and GPL2+)
(license (list license:ruby license:lgpl2.1+ license:gpl2+ )))) (license (list license:ruby license:lgpl2.1+ license:gpl2+ ))))
(define-public r-qtl
(package
(name "r-qtl")
(version "1.37-11")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://cran/src/contrib/qtl_"
version ".tar.gz"))
(sha256
(base32
"0h20d36mww7ljp51pfs66xq33yq4b4fwq9nsh02dpmfhlaxgx1xi"))))
(build-system r-build-system)
(home-page "http://rqtl.org/")
(synopsis "R package for analyzing QTL experiments in genetics")
(description "R/qtl is an extension library for the R statistics
system. It is used to analyze experimental crosses for identifying
genes contributing to variation in quantitative traits (so-called
quantitative trait loci, QTLs).
Using a hidden Markov model, R/qtl allows to estimate genetic maps, to
identify genotyping errors, and to perform single-QTL and two-QTL,
two-dimensional genome scans.")
(license license:gpl3)))