gnu: Add python-dnaio.
* gnu/packages/bioinformatics.scm (python-dnaio): New variable.
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@ -1919,6 +1919,29 @@ files between different genome assemblies. It supports most commonly used
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file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF.")
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(license license:gpl2+)))
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(define-public python-dnaio
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(package
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(name "python-dnaio")
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(version "0.3")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "dnaio" version))
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(sha256
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(base32
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"0f16m7hdlm0fz1n7y5asy0v9ghyrq17ni1p9iybq22ddzyd49r27"))))
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(build-system python-build-system)
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(native-inputs
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`(("python-cython" ,python-cython)
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("python-pytest" ,python-pytest)
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("python-xopen" ,python-xopen)))
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(home-page "https://github.com/marcelm/dnaio/")
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(synopsis "Read FASTA and FASTQ files efficiently")
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(description
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"dnaio is a Python library for fast parsing of FASTQ and also FASTA
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files. The code was previously part of the cutadapt tool.")
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(license license:expat)))
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(define-public cutadapt
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(package
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(name "cutadapt")
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