gnu: Add python-dnaio.

* gnu/packages/bioinformatics.scm (python-dnaio): New variable.
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Ricardo Wurmus 2018-10-21 12:57:43 +02:00
parent 7321920cd3
commit a5b0038cbd
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@ -1919,6 +1919,29 @@ files between different genome assemblies. It supports most commonly used
file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF.")
(license license:gpl2+)))
(define-public python-dnaio
(package
(name "python-dnaio")
(version "0.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "dnaio" version))
(sha256
(base32
"0f16m7hdlm0fz1n7y5asy0v9ghyrq17ni1p9iybq22ddzyd49r27"))))
(build-system python-build-system)
(native-inputs
`(("python-cython" ,python-cython)
("python-pytest" ,python-pytest)
("python-xopen" ,python-xopen)))
(home-page "https://github.com/marcelm/dnaio/")
(synopsis "Read FASTA and FASTQ files efficiently")
(description
"dnaio is a Python library for fast parsing of FASTQ and also FASTA
files. The code was previously part of the cutadapt tool.")
(license license:expat)))
(define-public cutadapt
(package
(name "cutadapt")