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gnu: Add r-diffbind. 

* gnu/packages/bioconductor.scm (r-diffbind): New variable.
This commit is contained in:
Roel Janssen 2018-04-24 13:33:56 +02:00
parent be65267f93
commit a5b56a5346
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1 changed files with 44 additions and 0 deletions
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gnu/packages/bioconductor.scm
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@ -23,6 +23,8 @@
#:use-module (guix download) #:use-module (guix download)
#:use-module (guix build-system r) #:use-module (guix build-system r)
#:use-module (gnu packages) #:use-module (gnu packages)
#:use-module (gnu packages cran)
#:use-module (gnu packages compression)
#:use-module (gnu packages statistics) #:use-module (gnu packages statistics)
#:use-module (gnu packages bioinformatics)) #:use-module (gnu packages bioinformatics))
@ -70,3 +72,45 @@ the Human Protein Atlas project.")
customizable permutation tests to assess the association between genomic customizable permutation tests to assess the association between genomic
region sets and other genomic features.") region sets and other genomic features.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-diffbind
(package
(name "r-diffbind")
(version "2.6.6")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "DiffBind" version))
(sha256
(base32
"1sm5h6nq77hjfis6kr1nqyizcxgfz87dgpqc4fxlfqkmsd9n3vkp"))))
(properties `((upstream-name . "DiffBind")))
(build-system r-build-system)
(inputs
`(("zlib" ,zlib)))
(propagated-inputs
`(("r-amap" ,r-amap)
("r-biocparallel" ,r-biocparallel)
("r-deseq2" ,r-deseq2)
("r-dplyr" ,r-dplyr)
("r-edger" ,r-edger)
("r-genomicalignments" ,r-genomicalignments)
("r-ggrepel" ,r-ggrepel)
("r-gplots" ,r-gplots)
("r-iranges" ,r-iranges)
("r-lattice" ,r-lattice)
("r-limma" ,r-limma)
("r-locfit" ,r-locfit)
("r-rcolorbrewer" , r-rcolorbrewer)
("r-rcpp" ,r-rcpp)
("r-rsamtools" ,r-rsamtools)
("r-s4vectors" ,r-s4vectors)
("r-systempiper" ,r-systempiper)
("r-zlibbioc" ,r-zlibbioc)))
(home-page "http://bioconductor.org/packages/DiffBind")
(synopsis "Differential binding analysis of ChIP-Seq peak data")
(description
"This package computes differentially bound sites from multiple
ChIP-seq experiments using affinity (quantitative) data. Also enables
occupancy (overlap) analysis and plotting functions.")
(license license:artistic2.0)))