gnu: Add python-intervaltree.
* gnu/packages/bioinformatics.scm (python-intervaltree): New variable.
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@ -13504,3 +13504,31 @@ reference transcripts provided in a annotation file (also in GTF/GFF3 format).
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(list
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(list
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license:expat ;license for gffcompare
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license:expat ;license for gffcompare
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license:artistic2.0))))) ;license for gclib
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license:artistic2.0))))) ;license for gclib
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(define-public python-intervaltree
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(package
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(name "python-intervaltree")
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(version "2.1.0")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "intervaltree" version))
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(sha256
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(base32
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"02w191m9zxkcjqr1kv2slxvhymwhj3jnsyy3a28b837pi15q19dc"))))
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(build-system python-build-system)
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;; FIXME: error when collecting tests
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(arguments '(#:tests? #f))
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(propagated-inputs
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`(("python-sortedcontainers" ,python-sortedcontainers)))
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(native-inputs
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`(("python-pytest" ,python-pytest)))
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(home-page "https://github.com/chaimleib/intervaltree")
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(synopsis "Editable interval tree data structure")
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(description
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"This package provides a mutable, self-balancing interval tree
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implementation for Python. Queries may be by point, by range overlap, or by
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range envelopment. This library was designed to allow tagging text and time
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intervals, where the intervals include the lower bound but not the upper
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bound.")
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(license license:asl2.0)))
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