gnu: Add imp.
* gnu/packages/bioinformatics.scm (imp): New variable.
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@ -85,6 +85,7 @@
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#:use-module (gnu packages ruby)
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#:use-module (gnu packages serialization)
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#:use-module (gnu packages statistics)
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#:use-module (gnu packages swig)
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#:use-module (gnu packages tbb)
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#:use-module (gnu packages tex)
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#:use-module (gnu packages texinfo)
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@ -9426,3 +9427,50 @@ exon-skipping scanner detection scheme.")
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(description "PHYLIP (the PHYLogeny Inference Package) is a package of
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programs for inferring phylogenies (evolutionary trees).")
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(license license:bsd-2)))
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(define-public imp
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(package
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(name "imp")
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(version "2.6.2")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "https://integrativemodeling.org/"
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version "/download/imp-" version ".tar.gz"))
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(sha256
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(base32
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"0lxqx7vh79d771svr611dkilp6sn30qrbw8zvscbrm37v38d2j6h"))))
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(build-system cmake-build-system)
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(arguments
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`(;; FIXME: Some tests fail because they produce warnings, others fail
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;; because the PYTHONPATH does not include the modeller's directory.
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#:tests? #f
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;; Do not place libraries in an architecture-specific directory.
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#:configure-flags
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(list "-DCMAKE_INSTALL_LIBDIR=lib")))
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(inputs
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`(("boost" ,boost)
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("gsl" ,gsl)
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("swig" ,swig)
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("hdf5" ,hdf5)
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("fftw" ,fftw)
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("python" ,python-2)))
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(propagated-inputs
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`(("python2-numpy" ,python2-numpy)
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("python2-scipy" ,python2-scipy)
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("python2-pandas" ,python2-pandas)
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("python2-scikit-learn" ,python2-scikit-learn)
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("python2-networkx" ,python2-networkx)))
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(home-page "https://integrativemodeling.org")
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(synopsis "Integrative modeling platform")
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(description "IMP's broad goal is to contribute to a comprehensive
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structural characterization of biomolecules ranging in size and complexity
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from small peptides to large macromolecular assemblies, by integrating data
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from diverse biochemical and biophysical experiments. IMP provides a C++ and
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Python toolbox for solving complex modeling problems, and a number of
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applications for tackling some common problems in a user-friendly way.")
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;; IMP is largely available under the GNU Lesser GPL; see the file
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;; COPYING.LGPL for the full text of this license. Some IMP modules are
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;; available under the GNU GPL (see the file COPYING.GPL).
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(license (list license:lgpl2.1+
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license:gpl3+))))
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